Wall clock time and date at job start Tue Mar 31 2020 18:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.39030 * 119.99519 * 2 1 4 4 N 1.32346 * 119.64355 * 0.02606 * 3 2 1 5 5 C 1.31892 * 121.94259 * 179.97438 * 4 3 2 6 6 C 1.37995 * 121.00170 * 0.02562 * 5 4 3 7 7 C 1.39976 * 119.17022 * 359.71613 * 6 5 4 8 8 C 1.48162 * 120.88409 * 180.30009 * 7 6 5 9 9 O 1.21508 * 120.00336 * 227.22889 * 8 7 6 10 10 N 1.34776 * 119.99996 * 47.22369 * 8 7 6 11 11 C 1.46969 * 120.59304 * 5.00282 * 10 8 7 12 12 C 1.53810 * 108.39896 * 124.75379 * 11 10 8 13 13 N 1.46971 * 108.57834 * 49.64229 * 12 11 10 14 14 C 1.36930 * 120.59579 * 124.61904 * 13 12 11 15 15 H 1.08003 * 120.00311 * 203.53065 * 14 13 12 16 16 C 1.38817 * 120.00283 * 23.53410 * 14 13 12 17 17 N 1.31611 * 120.00421 * 218.71829 * 16 14 13 18 18 Si 1.86802 * 119.99495 * 38.71213 * 16 14 13 19 19 H 1.48505 * 109.46946 * 95.63222 * 18 16 14 20 20 H 1.48498 * 109.46916 * 215.62940 * 18 16 14 21 21 H 1.48496 * 109.47550 * 335.63352 * 18 16 14 22 22 C 1.46965 * 118.80715 * 304.64684 * 13 12 11 23 23 C 1.46961 * 120.59691 * 185.28248 * 10 8 7 24 24 C 1.39075 * 119.64109 * 179.97438 * 3 2 1 25 25 N 1.48015 * 120.53542 * 359.97438 * 24 3 2 26 26 O 1.21802 * 120.00108 * 89.99658 * 25 24 3 27 27 O 1.21805 * 120.00158 * 269.72252 * 25 24 3 28 28 H 1.09002 * 109.46749 * 299.99303 * 1 2 3 29 29 H 1.08998 * 109.47246 * 59.99861 * 1 2 3 30 30 H 1.09005 * 109.46361 * 179.97438 * 1 2 3 31 31 H 0.96991 * 120.00126 * 180.02562 * 2 1 3 32 32 H 1.08007 * 119.49863 * 179.97438 * 5 4 3 33 33 H 1.07996 * 120.41697 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.61122 * 244.54481 * 11 10 8 35 35 H 1.09002 * 109.60891 * 5.05013 * 11 10 8 36 36 H 1.08999 * 109.74613 * 289.85227 * 12 11 10 37 37 H 1.09003 * 109.53234 * 169.30068 * 12 11 10 38 38 H 0.96997 * 120.00239 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.61200 * 295.47726 * 22 13 12 40 40 H 1.09006 * 109.75039 * 175.05303 * 22 13 12 41 41 H 1.08999 * 109.61222 * 354.95011 * 23 10 8 42 42 H 1.09002 * 109.61347 * 115.46079 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1601 1.2041 0.0000 4 7 1.4912 2.3460 0.0005 5 6 2.1042 3.5139 0.0010 6 6 3.4819 3.5934 0.0005 7 6 4.2335 2.4126 0.0055 8 6 5.7145 2.4537 0.0118 9 8 6.3450 1.7552 -0.7569 10 7 6.3624 3.2661 0.8702 11 6 5.6190 4.0343 1.8788 12 6 6.1994 3.7052 3.2646 13 7 7.6614 3.8435 3.2048 14 6 8.3195 4.6696 4.0763 15 1 9.2897 5.0663 3.8161 16 6 7.7397 4.9971 5.2943 17 7 7.8607 6.2167 5.7740 18 14 6.7877 3.7067 6.2525 19 1 7.6795 3.0822 7.2625 20 1 5.6367 4.3480 6.9374 21 1 6.2903 2.6642 5.3194 22 6 8.4042 3.0797 2.1926 23 6 7.8243 3.4044 0.8104 24 6 3.5509 1.1955 0.0005 25 7 4.2950 -0.0840 0.0017 26 8 4.6015 -0.6112 -1.0527 27 8 4.6052 -0.6072 1.0570 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0278 -0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 1.5191 4.4217 0.0010 33 1 3.9740 4.5547 0.0014 34 1 5.7254 5.1004 1.6783 35 1 4.5654 3.7569 1.8465 36 1 5.9396 2.6829 3.5394 37 1 5.7963 4.3987 4.0026 38 1 7.4553 6.4456 6.6249 39 1 8.3014 2.0128 2.3910 40 1 9.4579 3.3572 2.2216 41 1 8.2275 2.7110 0.0723 42 1 8.0842 4.4267 0.5356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575328148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:34 Heat of formation + Delta-G solvation = 65.188342 kcal Electronic energy + Delta-G solvation = -30107.050819 eV Core-core repulsion = 25899.883520 eV Total energy + Delta-G solvation = -4207.167299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.41855 -40.93384 -39.75803 -37.28706 -36.49634 -36.46796 -34.26929 -33.47556 -31.87129 -31.31444 -30.64536 -27.78866 -27.15503 -26.72634 -24.56752 -23.60086 -23.16063 -23.03290 -21.10719 -19.83044 -19.10305 -18.85209 -18.78156 -17.89848 -17.19052 -16.53730 -16.24403 -16.11860 -15.59874 -15.30337 -15.21269 -14.90781 -14.69034 -14.39887 -13.85672 -13.78708 -13.72664 -13.50682 -12.97277 -12.73270 -12.64437 -12.26729 -12.08045 -11.66751 -11.39372 -11.30784 -11.09232 -10.97528 -10.91495 -10.75835 -10.60604 -10.53251 -10.44059 -10.29846 -9.87247 -9.55699 -8.95337 -8.58985 -8.40002 -7.19009 -6.18911 -3.34883 0.00191 0.47249 0.48364 1.23212 2.22612 2.45778 2.78226 3.05215 3.30160 3.43434 3.50777 3.71957 3.96535 4.10207 4.29447 4.43881 4.56036 4.70877 4.71008 4.91300 5.05572 5.09431 5.26280 5.31475 5.35795 5.43166 5.56980 5.62452 5.71677 5.86484 5.91931 6.02530 6.11127 6.30160 6.36580 6.45471 6.47139 6.62946 6.63728 7.28257 7.32064 7.55009 7.74877 7.89701 8.13603 8.77234 9.57325 9.95409 10.94675 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.003979 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.676484 B = 7036.062261 C = 7532.223209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.720 5.720 3 C 0.452 3.548 4 N -0.512 5.512 5 C 0.188 3.812 6 C -0.196 4.196 7 C 0.021 3.979 8 C 0.537 3.463 9 O -0.523 6.523 10 N -0.576 5.576 11 C 0.074 3.926 12 C 0.133 3.867 13 N -0.598 5.598 14 C -0.279 4.279 15 H 0.086 0.914 16 C 0.042 3.958 17 N -0.873 5.873 18 Si 0.828 3.172 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.258 1.258 22 C 0.132 3.868 23 C 0.095 3.905 24 C -0.116 4.116 25 N 0.026 4.974 26 O -0.114 6.114 27 O -0.147 6.147 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.411 0.589 32 H 0.184 0.816 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.081 0.919 38 H 0.264 0.736 39 H 0.029 0.971 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.643 -6.065 -12.674 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.351 5.351 3 C 0.213 3.787 4 N -0.231 5.231 5 C 0.030 3.970 6 C -0.220 4.220 7 C 0.009 3.991 8 C 0.322 3.678 9 O -0.400 6.400 10 N -0.307 5.307 11 C -0.050 4.050 12 C 0.006 3.994 13 N -0.321 5.321 14 C -0.405 4.405 15 H 0.104 0.896 16 C -0.160 4.160 17 N -0.513 5.513 18 Si 0.654 3.346 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.183 1.183 22 C 0.005 3.995 23 C -0.028 4.028 24 C -0.206 4.206 25 N 0.556 4.444 26 O -0.342 6.342 27 O -0.365 6.365 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.247 0.753 32 H 0.201 0.799 33 H 0.181 0.819 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.799 -5.658 -12.862 21.901 hybrid contribution 0.698 -1.210 0.897 1.660 sum -16.100 -6.868 -11.965 21.203 Atomic orbital electron populations 1.21629 0.77261 1.02674 1.02871 1.44547 1.08066 1.03827 1.78654 1.17672 0.83824 0.88475 0.88712 1.67433 1.38254 0.96668 1.20723 1.22867 0.91770 0.94917 0.87492 1.22205 0.94918 0.98111 1.06721 1.20023 0.95504 0.91152 0.92391 1.18116 0.85724 0.81641 0.82360 1.90884 1.66935 1.41652 1.40569 1.47970 1.08829 1.42258 1.31680 1.22985 0.95130 0.96390 0.90457 1.21775 0.85188 0.99445 0.93025 1.44313 1.00423 1.50593 1.36741 1.18772 1.05193 1.20336 0.96231 0.89648 1.25116 0.97566 0.95905 0.97406 1.70137 1.44511 1.16264 1.20345 0.87729 0.79463 0.85428 0.81963 1.21799 1.21939 1.18257 1.21339 0.96362 0.94760 0.87005 1.22397 0.77463 1.02334 1.00606 1.21169 0.91076 0.84898 1.23439 1.43168 0.99225 1.01436 1.00535 1.94565 1.54824 1.64026 1.20766 1.94601 1.56310 1.64955 1.20600 0.91550 0.91623 0.90279 0.75278 0.79872 0.81913 0.89884 0.90517 0.94746 0.90088 0.92622 0.95261 0.90228 0.89282 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 10.72 59.85 0.64 1.29 16 2 N -0.72 -7.12 5.85 -67.22 -0.39 -7.51 16 3 C 0.45 5.47 7.48 -155.06 -1.16 4.31 16 4 N -0.51 -5.34 9.53 -12.48 -0.12 -5.45 16 5 C 0.19 1.56 11.16 -17.61 -0.20 1.37 16 6 C -0.20 -1.98 7.58 -39.02 -0.30 -2.28 16 7 C 0.02 0.31 4.91 -104.68 -0.51 -0.21 16 8 C 0.54 9.21 7.04 -12.18 -0.09 9.13 16 9 O -0.52 -10.52 15.58 5.35 0.08 -10.44 16 10 N -0.58 -9.64 2.94 -173.21 -0.51 -10.14 16 11 C 0.07 1.18 5.49 -3.36 -0.02 1.16 16 12 C 0.13 2.69 4.56 -3.36 -0.02 2.68 16 13 N -0.60 -13.40 2.75 -171.76 -0.47 -13.88 16 14 C -0.28 -7.28 9.86 -15.06 -0.15 -7.43 16 15 H 0.09 2.37 8.04 -52.48 -0.42 1.95 16 16 C 0.04 1.14 4.80 -17.43 -0.08 1.05 16 17 N -0.87 -24.99 13.97 55.49 0.78 -24.21 16 18 Si 0.83 20.29 26.38 -169.99 -4.48 15.80 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.26 -6.12 5.01 56.52 0.28 -5.83 16 22 C 0.13 2.54 6.67 -3.60 -0.02 2.51 16 23 C 0.09 1.60 6.60 -3.60 -0.02 1.57 16 24 C -0.12 -1.70 6.19 -79.15 -0.49 -2.19 16 25 N 0.03 0.43 2.54 34.35 0.09 0.52 16 26 O -0.11 -1.97 18.94 -30.26 -0.57 -2.54 16 27 O -0.15 -2.61 19.26 -29.46 -0.57 -3.18 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.41 4.01 8.06 -40.82 -0.33 3.68 16 32 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.16 1.31 7.27 -52.49 -0.38 0.93 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.03 4.95 -51.93 -0.26 0.77 16 36 H 0.03 0.74 6.84 -51.93 -0.36 0.39 16 37 H 0.08 1.74 5.38 -51.93 -0.28 1.46 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.46 7.92 -51.93 -0.41 1.05 16 41 H 0.09 1.48 6.99 -51.93 -0.36 1.11 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -33.87 350.71 -8.31 -42.18 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.01 Total: 0.61 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: -2.41 Total: 12.96 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.63 Total: -60.68 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -1.06 Total: -16.16 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.48 Total: 15.80 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.87 -8.31 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575328148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.370 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds