Wall clock time and date at job start Tue Mar 31 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.39030 * 119.99519 * 2 1 4 4 N 1.32346 * 119.64355 * 0.02606 * 3 2 1 5 5 C 1.31892 * 121.94259 * 179.97438 * 4 3 2 6 6 C 1.37995 * 121.00170 * 0.02562 * 5 4 3 7 7 C 1.39976 * 119.17022 * 359.71613 * 6 5 4 8 8 C 1.48162 * 120.88409 * 180.30009 * 7 6 5 9 9 O 1.21508 * 120.00336 * 227.22889 * 8 7 6 10 10 N 1.34776 * 119.99996 * 47.22369 * 8 7 6 11 11 C 1.46969 * 120.59304 * 5.00282 * 10 8 7 12 12 C 1.53810 * 108.39896 * 124.75379 * 11 10 8 13 13 N 1.46971 * 108.57834 * 49.64229 * 12 11 10 14 14 C 1.36930 * 120.59579 * 124.61904 * 13 12 11 15 15 H 1.08003 * 120.00311 * 203.53065 * 14 13 12 16 16 C 1.38817 * 120.00283 * 23.53410 * 14 13 12 17 17 N 1.31611 * 120.00421 * 218.71829 * 16 14 13 18 18 Si 1.86802 * 119.99495 * 38.71213 * 16 14 13 19 19 H 1.48505 * 109.46946 * 95.63222 * 18 16 14 20 20 H 1.48498 * 109.46916 * 215.62940 * 18 16 14 21 21 H 1.48496 * 109.47550 * 335.63352 * 18 16 14 22 22 C 1.46965 * 118.80715 * 304.64684 * 13 12 11 23 23 C 1.46961 * 120.59691 * 185.28248 * 10 8 7 24 24 C 1.39075 * 119.64109 * 179.97438 * 3 2 1 25 25 N 1.48015 * 120.53542 * 359.97438 * 24 3 2 26 26 O 1.21802 * 120.00108 * 89.99658 * 25 24 3 27 27 O 1.21805 * 120.00158 * 269.72252 * 25 24 3 28 28 H 1.09002 * 109.46749 * 299.99303 * 1 2 3 29 29 H 1.08998 * 109.47246 * 59.99861 * 1 2 3 30 30 H 1.09005 * 109.46361 * 179.97438 * 1 2 3 31 31 H 0.96991 * 120.00126 * 180.02562 * 2 1 3 32 32 H 1.08007 * 119.49863 * 179.97438 * 5 4 3 33 33 H 1.07996 * 120.41697 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.61122 * 244.54481 * 11 10 8 35 35 H 1.09002 * 109.60891 * 5.05013 * 11 10 8 36 36 H 1.08999 * 109.74613 * 289.85227 * 12 11 10 37 37 H 1.09003 * 109.53234 * 169.30068 * 12 11 10 38 38 H 0.96997 * 120.00239 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.61200 * 295.47726 * 22 13 12 40 40 H 1.09006 * 109.75039 * 175.05303 * 22 13 12 41 41 H 1.08999 * 109.61222 * 354.95011 * 23 10 8 42 42 H 1.09002 * 109.61347 * 115.46079 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1601 1.2041 0.0000 4 7 1.4912 2.3460 0.0005 5 6 2.1042 3.5139 0.0010 6 6 3.4819 3.5934 0.0005 7 6 4.2335 2.4126 0.0055 8 6 5.7145 2.4537 0.0118 9 8 6.3450 1.7552 -0.7569 10 7 6.3624 3.2661 0.8702 11 6 5.6190 4.0343 1.8788 12 6 6.1994 3.7052 3.2646 13 7 7.6614 3.8435 3.2048 14 6 8.3195 4.6696 4.0763 15 1 9.2897 5.0663 3.8161 16 6 7.7397 4.9971 5.2943 17 7 7.8607 6.2167 5.7740 18 14 6.7877 3.7067 6.2525 19 1 7.6795 3.0822 7.2625 20 1 5.6367 4.3480 6.9374 21 1 6.2903 2.6642 5.3194 22 6 8.4042 3.0797 2.1926 23 6 7.8243 3.4044 0.8104 24 6 3.5509 1.1955 0.0005 25 7 4.2950 -0.0840 0.0017 26 8 4.6015 -0.6112 -1.0527 27 8 4.6052 -0.6072 1.0570 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0278 -0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 1.5191 4.4217 0.0010 33 1 3.9740 4.5547 0.0014 34 1 5.7254 5.1004 1.6783 35 1 4.5654 3.7569 1.8465 36 1 5.9396 2.6829 3.5394 37 1 5.7963 4.3987 4.0026 38 1 7.4553 6.4456 6.6249 39 1 8.3014 2.0128 2.3910 40 1 9.4579 3.3572 2.2216 41 1 8.2275 2.7110 0.0723 42 1 8.0842 4.4267 0.5356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575328148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:33 Heat of formation + Delta-G solvation = 41.920610 kcal Electronic energy + Delta-G solvation = -30108.059784 eV Core-core repulsion = 25899.883520 eV Total energy + Delta-G solvation = -4208.176263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.55913 -42.01344 -40.92988 -38.82312 -37.73967 -37.27591 -35.86591 -34.53765 -33.57748 -32.55785 -31.86755 -29.27076 -28.11322 -27.69862 -25.92803 -25.02754 -24.53453 -24.06924 -22.49486 -21.06015 -20.32111 -20.03031 -19.83553 -19.22152 -18.42990 -17.97163 -17.41477 -17.31248 -16.93640 -16.46502 -16.16635 -16.13892 -16.04451 -15.68225 -15.32986 -15.06140 -14.86931 -14.46275 -14.37075 -14.18458 -14.05775 -13.57825 -13.15914 -12.96947 -12.87708 -12.63821 -12.58682 -12.42251 -12.36919 -12.23464 -12.07602 -11.83726 -11.64003 -11.55536 -11.44844 -11.00434 -10.73791 -10.09800 -9.36757 -9.02680 -8.26416 -5.38967 -0.93853 -0.82626 -0.34934 0.14483 1.09591 1.31432 1.45077 1.48779 1.51954 1.70220 2.19298 2.40875 2.69361 2.89899 3.08762 3.20339 3.28983 3.43868 3.74154 3.93577 3.99213 4.06552 4.21974 4.28034 4.29714 4.43204 4.50265 4.55798 4.57073 4.61688 4.76598 4.83478 4.88283 4.89795 5.01383 5.07115 5.23274 5.55834 5.67308 5.79611 5.98924 6.09450 6.22659 6.48722 6.59320 6.83499 7.57732 7.99499 8.90617 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.003979 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.676484 B = 7036.062261 C = 7532.223209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.720 5.720 3 C 0.450 3.550 4 N -0.509 5.509 5 C 0.213 3.787 6 C -0.185 4.185 7 C -0.004 4.004 8 C 0.537 3.463 9 O -0.561 6.561 10 N -0.579 5.579 11 C 0.088 3.912 12 C 0.126 3.874 13 N -0.609 5.609 14 C -0.266 4.266 15 H 0.061 0.939 16 C 0.000 4.000 17 N -0.915 5.915 18 Si 0.883 3.117 19 H -0.306 1.306 20 H -0.288 1.288 21 H -0.248 1.248 22 C 0.131 3.869 23 C 0.104 3.896 24 C -0.148 4.148 25 N 0.032 4.968 26 O -0.129 6.129 27 O -0.179 6.179 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.409 0.591 32 H 0.239 0.761 33 H 0.190 0.810 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.265 0.735 39 H 0.019 0.981 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.772 -5.142 -13.732 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.348 5.348 3 C 0.211 3.789 4 N -0.228 5.228 5 C 0.053 3.947 6 C -0.208 4.208 7 C -0.016 4.016 8 C 0.324 3.676 9 O -0.441 6.441 10 N -0.309 5.309 11 C -0.036 4.036 12 C 0.000 4.000 13 N -0.333 5.333 14 C -0.395 4.395 15 H 0.079 0.921 16 C -0.198 4.198 17 N -0.558 5.558 18 Si 0.710 3.290 19 H -0.235 1.235 20 H -0.215 1.215 21 H -0.173 1.173 22 C 0.005 3.995 23 C -0.019 4.019 24 C -0.238 4.238 25 N 0.559 4.441 26 O -0.358 6.358 27 O -0.393 6.393 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.244 0.756 32 H 0.255 0.745 33 H 0.207 0.793 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.972 -4.802 -13.914 24.810 hybrid contribution 1.621 -1.467 1.140 2.465 sum -18.351 -6.269 -12.774 23.222 Atomic orbital electron populations 1.21854 0.75208 1.04488 1.03105 1.44829 1.09358 1.03260 1.77399 1.17877 0.82975 0.89718 0.88345 1.67645 1.37802 0.96747 1.20577 1.23797 0.91399 0.95796 0.83732 1.22607 0.95596 0.97473 1.05104 1.19951 0.93770 0.92565 0.95278 1.18543 0.87122 0.80446 0.81496 1.90856 1.68273 1.42899 1.42065 1.48013 1.08691 1.42389 1.31832 1.22883 0.96250 0.97203 0.87219 1.21783 0.84004 0.98398 0.95785 1.44427 1.01619 1.50690 1.36576 1.18732 1.04340 1.19672 0.96720 0.92121 1.25482 0.99362 0.96820 0.98178 1.70186 1.46998 1.17613 1.20973 0.86869 0.78236 0.83434 0.80477 1.23473 1.21463 1.17253 1.21412 0.96718 0.93731 0.87604 1.22219 0.77967 1.03076 0.98646 1.21322 0.91904 0.83367 1.27257 1.43518 0.98647 1.02100 0.99849 1.94532 1.55296 1.65000 1.20937 1.94575 1.57575 1.66205 1.20906 0.91365 0.91105 0.87889 0.75585 0.74543 0.79275 0.88113 0.87435 0.96006 0.91104 0.92614 0.96285 0.89823 0.89172 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.00 10.72 127.77 1.37 2.37 16 2 N -0.72 -12.98 5.85 -366.58 -2.15 -15.13 16 3 C 0.45 9.87 7.48 133.06 0.99 10.86 16 4 N -0.51 -8.51 9.53 -193.40 -1.84 -10.36 16 5 C 0.21 2.35 11.16 84.63 0.94 3.30 16 6 C -0.18 -2.91 7.58 22.63 0.17 -2.73 16 7 C 0.00 -0.10 4.91 -19.90 -0.10 -0.20 16 8 C 0.54 17.82 7.04 86.88 0.61 18.44 16 9 O -0.56 -22.64 15.58 -3.74 -0.06 -22.69 16 10 N -0.58 -18.35 2.94 -820.20 -2.41 -20.76 16 11 C 0.09 2.53 5.49 86.56 0.47 3.00 16 12 C 0.13 4.95 4.56 86.56 0.40 5.34 16 13 N -0.61 -27.01 2.75 -697.32 -1.92 -28.93 16 14 C -0.27 -14.00 9.86 84.04 0.83 -13.17 16 15 H 0.06 3.44 8.04 -2.91 -0.02 3.42 16 16 C 0.00 0.02 4.80 84.86 0.41 0.43 16 17 N -0.92 -52.86 13.97 21.65 0.30 -52.56 16 18 Si 0.88 42.28 26.38 68.60 1.81 44.09 16 19 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.25 -11.38 5.01 99.48 0.50 -10.88 16 22 C 0.13 5.02 6.67 86.41 0.58 5.60 16 23 C 0.10 3.40 6.60 86.42 0.57 3.97 16 24 C -0.15 -4.18 6.19 36.89 0.23 -3.95 16 25 N 0.03 1.07 2.54 -45.24 -0.11 0.96 16 26 O -0.13 -4.59 18.94 19.65 0.37 -4.21 16 27 O -0.18 -6.57 19.26 18.88 0.36 -6.21 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.41 7.69 8.06 -92.71 -0.75 6.94 16 32 H 0.24 0.08 8.06 -2.91 -0.02 0.06 16 33 H 0.19 1.97 7.27 -2.91 -0.02 1.95 16 34 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.11 2.46 4.95 -2.39 -0.01 2.45 16 36 H 0.02 0.92 6.84 -2.39 -0.02 0.90 16 37 H 0.07 2.92 5.38 -2.39 -0.01 2.91 16 38 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 3.08 7.92 -2.38 -0.02 3.06 16 41 H 0.09 2.96 6.99 -2.39 -0.02 2.94 16 42 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -76.48 350.71 1.96 -74.52 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.13 Total: 8.03 kcal Atomic # 6 Polarization: 25.77 SS G_CDS: 7.48 Total: 33.25 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -8.14 Total: -126.78 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: 0.68 Total: -33.12 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.81 Total: 44.09 kcal Total: -76.48 1.96 -74.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575328148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.443 kcal (2) G-P(sol) polarization free energy of solvation -76.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds