Wall clock time and date at job start Tue Mar 31 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99757 * 2 1 4 4 C 1.34780 * 120.00361 * 180.02562 * 2 1 3 5 5 O 1.21503 * 119.99675 * 354.74621 * 4 2 1 6 6 C 1.48182 * 120.00028 * 174.73824 * 4 2 1 7 7 C 1.39073 * 119.69130 * 173.20124 * 6 4 2 8 8 C 1.39371 * 118.96761 * 180.28433 * 7 6 4 9 9 N 1.39552 * 120.82847 * 179.70399 * 8 7 6 10 10 C 1.34772 * 120.00316 * 213.21260 * 9 8 7 11 11 O 1.21588 * 119.99897 * 5.41324 * 10 9 8 12 12 N 1.34779 * 120.00673 * 185.41434 * 10 9 8 13 13 C 1.46500 * 120.00354 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.46810 * 179.97438 * 13 12 10 15 15 O 1.21289 * 120.00405 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99569 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99932 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99519 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99850 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00001 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.47142 * 90.00068 * 21 19 17 23 23 H 1.48500 * 109.47064 * 209.99782 * 21 19 17 24 24 H 1.48501 * 109.47369 * 330.00365 * 21 19 17 25 25 C 1.39352 * 118.34196 * 359.43072 * 8 7 6 26 26 C 1.38272 * 119.27129 * 0.56856 * 25 8 7 27 27 N 1.31619 * 120.98800 * 359.70030 * 26 25 8 28 28 H 1.09005 * 109.46760 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46914 * 299.99774 * 1 2 3 30 30 H 1.08996 * 109.47437 * 60.00075 * 1 2 3 31 31 H 1.09003 * 109.47405 * 264.26962 * 3 2 1 32 32 H 1.08998 * 109.47370 * 24.27582 * 3 2 1 33 33 H 1.09005 * 109.47316 * 144.26952 * 3 2 1 34 34 H 1.08005 * 120.51425 * 0.02562 * 7 6 4 35 35 H 0.97005 * 120.00240 * 33.20795 * 9 8 7 36 36 H 0.97004 * 119.99408 * 359.97438 * 12 10 9 37 37 H 1.08997 * 109.46657 * 299.99687 * 13 12 10 38 38 H 1.08998 * 109.46658 * 59.99976 * 13 12 10 39 39 H 0.96998 * 119.99811 * 359.97438 * 16 14 13 40 40 H 0.96994 * 120.00329 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.35965 * 180.29466 * 25 8 7 42 42 H 1.08003 * 119.50891 * 179.71905 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5353 -2.2173 0.0954 6 6 3.6161 -1.1698 -0.1182 7 6 4.3164 -2.3629 0.0240 8 6 5.7058 -2.3469 -0.0836 9 7 6.4477 -3.5204 0.0585 10 6 7.6773 -3.4779 0.6086 11 8 8.1009 -2.4360 1.0705 12 7 8.4374 -4.5902 0.6469 13 6 9.7742 -4.5439 1.2444 14 6 10.4089 -5.9081 1.1617 15 8 9.8040 -6.8288 0.6541 16 7 11.6484 -6.1055 1.6528 17 6 12.2261 -7.3466 1.5771 18 1 11.6877 -8.1661 1.1244 19 6 13.5042 -7.5499 2.0829 20 7 14.0577 -8.7396 2.0109 21 14 14.4355 -6.1323 2.8653 22 1 14.1366 -6.0860 4.3192 23 1 15.8940 -6.3281 2.6658 24 1 14.0164 -4.8556 2.2330 25 6 6.3354 -1.1310 -0.3424 26 6 5.5695 0.0130 -0.4712 27 7 4.2589 -0.0328 -0.3589 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.4680 1.5322 -1.0225 32 1 1.5678 2.0518 0.4225 33 1 3.1016 1.1664 0.6001 34 1 3.7919 -3.2867 0.2189 35 1 6.0783 -4.3667 -0.2386 36 1 8.0992 -5.4215 0.2787 37 1 10.3886 -3.8235 0.7044 38 1 9.6949 -4.2431 2.2890 39 1 12.1320 -5.3694 2.0590 40 1 14.9501 -8.8815 2.3636 41 1 7.4101 -1.0820 -0.4369 42 1 6.0538 0.9582 -0.6673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588249284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:27 Heat of formation + Delta-G solvation = -29.699435 kcal Electronic energy + Delta-G solvation = -27248.361416 eV Core-core repulsion = 23037.079474 eV Total energy + Delta-G solvation = -4211.281942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36413 -40.35064 -39.15887 -38.46998 -36.05503 -35.49339 -34.70700 -33.94031 -31.89900 -31.83936 -31.18980 -28.38794 -27.87471 -26.82061 -24.72221 -24.04013 -23.48327 -21.50379 -20.23455 -19.73801 -19.10067 -18.60605 -17.96907 -17.23554 -16.43720 -16.34173 -16.17809 -15.87708 -15.79073 -15.49573 -15.06740 -14.98828 -14.48792 -14.36728 -14.22403 -14.10004 -13.86418 -13.32551 -13.22747 -12.86703 -12.80495 -12.60712 -12.48048 -12.32590 -12.25723 -12.18978 -11.32182 -11.23426 -10.70242 -10.63003 -10.54079 -10.12653 -9.77293 -9.66482 -9.52990 -9.23295 -9.00280 -8.87641 -8.79885 -8.37960 -6.47214 -4.00375 0.38300 0.82781 2.21421 2.40617 2.65395 2.92936 2.95129 2.99110 3.07954 3.46760 3.57807 3.73862 3.89142 3.97805 4.31865 4.44230 4.60651 4.75325 4.84888 4.93252 5.03593 5.07196 5.07503 5.25344 5.35379 5.43984 5.45778 5.51136 5.64644 5.68747 5.72321 5.72829 5.94147 6.16288 6.32375 6.40721 6.61739 6.91078 7.36973 7.39394 7.73471 7.79123 7.92931 8.27502 8.38020 8.74466 9.22110 9.54318 10.64716 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.034306 B = 0.001799 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.996491 B =15559.910739 C =16114.070210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.605 5.605 3 C 0.090 3.910 4 C 0.573 3.427 5 O -0.535 6.535 6 C 0.093 3.907 7 C -0.142 4.142 8 C 0.216 3.784 9 N -0.683 5.683 10 C 0.706 3.294 11 O -0.576 6.576 12 N -0.714 5.714 13 C 0.124 3.876 14 C 0.435 3.565 15 O -0.579 6.579 16 N -0.573 5.573 17 C -0.312 4.312 18 H 0.122 0.878 19 C 0.046 3.954 20 N -0.872 5.872 21 Si 0.880 3.120 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.267 1.267 25 C -0.151 4.151 26 C 0.112 3.888 27 N -0.470 5.470 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.415 0.585 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.375 0.625 40 H 0.276 0.724 41 H 0.154 0.846 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.224 21.287 -4.442 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.337 5.337 3 C -0.053 4.053 4 C 0.360 3.640 5 O -0.412 6.412 6 C -0.045 4.045 7 C -0.166 4.166 8 C 0.111 3.889 9 N -0.331 5.331 10 C 0.406 3.594 11 O -0.453 6.453 12 N -0.370 5.370 13 C -0.004 4.004 14 C 0.221 3.779 15 O -0.464 6.464 16 N -0.210 5.210 17 C -0.441 4.441 18 H 0.140 0.860 19 C -0.158 4.158 20 N -0.510 5.510 21 Si 0.705 3.295 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.192 1.192 25 C -0.173 4.173 26 C -0.047 4.047 27 N -0.185 5.185 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.168 0.832 35 H 0.252 0.748 36 H 0.250 0.750 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.208 0.792 40 H 0.087 0.913 41 H 0.171 0.829 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.767 21.565 -4.326 30.249 hybrid contribution 1.218 -0.551 0.445 1.408 sum -19.549 21.014 -3.881 28.963 Atomic orbital electron populations 1.21752 0.78851 1.04319 1.01475 1.47556 1.07092 1.06837 1.72225 1.22131 0.96929 0.83091 1.03128 1.17925 0.85826 0.83648 0.76641 1.90777 1.68825 1.31252 1.50305 1.20678 0.93814 0.89387 1.00646 1.21780 0.92431 1.00294 1.02072 1.17610 0.89877 0.86904 0.94549 1.42542 1.16606 1.09499 1.64450 1.15763 0.80049 0.84582 0.78960 1.90944 1.72490 1.29874 1.52025 1.44768 1.16747 1.11859 1.63674 1.20901 0.82513 0.97425 0.99566 1.19568 0.83495 0.89340 0.85470 1.90546 1.62922 1.43674 1.49241 1.42103 1.14216 1.11733 1.52993 1.19443 0.99446 0.86958 1.38210 0.86040 1.25074 0.96534 0.96905 0.97321 1.69611 1.16037 1.21064 1.44315 0.86666 0.80638 0.81778 0.80376 1.19346 1.19918 1.19213 1.22444 1.03229 0.92132 0.99538 1.22738 0.88671 0.98373 0.94874 1.68032 1.10631 1.26943 1.12846 0.89467 0.91983 0.91978 0.92017 0.92392 0.88744 0.83203 0.74849 0.74988 0.89459 0.89495 0.79195 0.91293 0.82858 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.66 59.84 0.64 1.16 16 2 N -0.60 -5.41 3.27 -190.52 -0.62 -6.03 16 3 C 0.09 0.60 9.15 59.85 0.55 1.15 16 4 C 0.57 6.61 7.65 -12.17 -0.09 6.51 16 5 O -0.54 -7.52 15.68 5.36 0.08 -7.44 16 6 C 0.09 1.01 6.56 -83.05 -0.54 0.46 16 7 C -0.14 -1.50 9.58 -38.85 -0.37 -1.88 16 8 C 0.22 2.34 6.31 -83.51 -0.53 1.81 16 9 N -0.68 -7.25 5.35 -14.08 -0.08 -7.32 16 10 C 0.71 9.64 8.32 -86.92 -0.72 8.91 16 11 O -0.58 -9.27 14.10 5.29 0.07 -9.20 16 12 N -0.71 -10.14 5.53 -66.42 -0.37 -10.51 16 13 C 0.12 1.96 6.15 -5.19 -0.03 1.93 16 14 C 0.44 9.03 7.85 -10.98 -0.09 8.95 16 15 O -0.58 -13.94 15.24 5.55 0.08 -13.86 16 16 N -0.57 -12.75 5.09 -10.96 -0.06 -12.80 16 17 C -0.31 -8.36 10.16 -14.93 -0.15 -8.51 16 18 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 19 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 20 N -0.87 -24.37 13.96 55.50 0.77 -23.60 16 21 Si 0.88 18.43 27.74 -169.99 -4.71 13.71 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.27 -5.07 6.52 56.52 0.37 -4.70 16 25 C -0.15 -1.56 8.73 -39.15 -0.34 -1.90 16 26 C 0.11 0.95 11.17 -17.63 -0.20 0.76 16 27 N -0.47 -4.45 6.17 -9.88 -0.06 -4.51 16 28 H 0.09 0.70 6.91 -51.93 -0.36 0.35 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.40 7.98 -51.93 -0.41 -0.01 16 32 H 0.06 0.27 8.03 -51.93 -0.42 -0.15 16 33 H 0.09 0.72 5.80 -51.93 -0.30 0.42 16 34 H 0.15 1.50 7.65 -52.48 -0.40 1.10 16 35 H 0.41 3.31 8.84 -40.82 -0.36 2.95 16 36 H 0.41 5.71 7.46 -40.82 -0.30 5.41 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.37 7.31 5.76 -40.82 -0.24 7.07 16 40 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.15 1.70 6.53 -52.49 -0.34 1.36 16 42 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -34.06 361.96 -6.21 -40.27 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -4.81 Total: 15.35 kcal Atomic # 6 Polarization: 22.45 SS G_CDS: -1.98 Total: 20.47 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.41 Total: -64.76 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: 0.24 Total: -30.49 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.71 Total: 13.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.06 -6.21 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588249284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.567 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds