Wall clock time and date at job start Tue Mar 31 2020 18:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99757 * 2 1 4 4 C 1.34780 * 120.00361 * 180.02562 * 2 1 3 5 5 O 1.21503 * 119.99675 * 354.74621 * 4 2 1 6 6 C 1.48182 * 120.00028 * 174.73824 * 4 2 1 7 7 C 1.39073 * 119.69130 * 173.20124 * 6 4 2 8 8 C 1.39371 * 118.96761 * 180.28433 * 7 6 4 9 9 N 1.39552 * 120.82847 * 179.70399 * 8 7 6 10 10 C 1.34772 * 120.00316 * 213.21260 * 9 8 7 11 11 O 1.21588 * 119.99897 * 5.41324 * 10 9 8 12 12 N 1.34779 * 120.00673 * 185.41434 * 10 9 8 13 13 C 1.46500 * 120.00354 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.46810 * 179.97438 * 13 12 10 15 15 O 1.21289 * 120.00405 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99569 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99932 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99519 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99850 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00001 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.47142 * 90.00068 * 21 19 17 23 23 H 1.48500 * 109.47064 * 209.99782 * 21 19 17 24 24 H 1.48501 * 109.47369 * 330.00365 * 21 19 17 25 25 C 1.39352 * 118.34196 * 359.43072 * 8 7 6 26 26 C 1.38272 * 119.27129 * 0.56856 * 25 8 7 27 27 N 1.31619 * 120.98800 * 359.70030 * 26 25 8 28 28 H 1.09005 * 109.46760 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46914 * 299.99774 * 1 2 3 30 30 H 1.08996 * 109.47437 * 60.00075 * 1 2 3 31 31 H 1.09003 * 109.47405 * 264.26962 * 3 2 1 32 32 H 1.08998 * 109.47370 * 24.27582 * 3 2 1 33 33 H 1.09005 * 109.47316 * 144.26952 * 3 2 1 34 34 H 1.08005 * 120.51425 * 0.02562 * 7 6 4 35 35 H 0.97005 * 120.00240 * 33.20795 * 9 8 7 36 36 H 0.97004 * 119.99408 * 359.97438 * 12 10 9 37 37 H 1.08997 * 109.46657 * 299.99687 * 13 12 10 38 38 H 1.08998 * 109.46658 * 59.99976 * 13 12 10 39 39 H 0.96998 * 119.99811 * 359.97438 * 16 14 13 40 40 H 0.96994 * 120.00329 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.35965 * 180.29466 * 25 8 7 42 42 H 1.08003 * 119.50891 * 179.71905 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5353 -2.2173 0.0954 6 6 3.6161 -1.1698 -0.1182 7 6 4.3164 -2.3629 0.0240 8 6 5.7058 -2.3469 -0.0836 9 7 6.4477 -3.5204 0.0585 10 6 7.6773 -3.4779 0.6086 11 8 8.1009 -2.4360 1.0705 12 7 8.4374 -4.5902 0.6469 13 6 9.7742 -4.5439 1.2444 14 6 10.4089 -5.9081 1.1617 15 8 9.8040 -6.8288 0.6541 16 7 11.6484 -6.1055 1.6528 17 6 12.2261 -7.3466 1.5771 18 1 11.6877 -8.1661 1.1244 19 6 13.5042 -7.5499 2.0829 20 7 14.0577 -8.7396 2.0109 21 14 14.4355 -6.1323 2.8653 22 1 14.1366 -6.0860 4.3192 23 1 15.8940 -6.3281 2.6658 24 1 14.0164 -4.8556 2.2330 25 6 6.3354 -1.1310 -0.3424 26 6 5.5695 0.0130 -0.4712 27 7 4.2589 -0.0328 -0.3589 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.4680 1.5322 -1.0225 32 1 1.5678 2.0518 0.4225 33 1 3.1016 1.1664 0.6001 34 1 3.7919 -3.2867 0.2189 35 1 6.0783 -4.3667 -0.2386 36 1 8.0992 -5.4215 0.2787 37 1 10.3886 -3.8235 0.7044 38 1 9.6949 -4.2431 2.2890 39 1 12.1320 -5.3694 2.0590 40 1 14.9501 -8.8815 2.3636 41 1 7.4101 -1.0820 -0.4369 42 1 6.0538 0.9582 -0.6673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588249284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:26 Heat of formation + Delta-G solvation = -57.160130 kcal Electronic energy + Delta-G solvation = -27249.552201 eV Core-core repulsion = 23037.079474 eV Total energy + Delta-G solvation = -4212.472727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.23494 -41.33379 -40.39542 -39.76642 -36.89241 -36.43926 -36.20885 -35.45939 -33.84120 -32.60846 -32.09343 -29.34298 -28.89997 -27.52267 -26.36598 -24.89339 -24.34043 -22.49875 -21.50627 -21.06021 -20.56095 -19.89058 -18.98012 -18.04608 -17.51078 -17.31908 -17.25668 -16.91277 -16.80381 -16.77021 -16.37887 -16.13010 -15.77471 -15.57101 -15.10181 -14.96291 -14.88235 -14.62522 -14.33451 -14.12151 -14.03217 -13.78111 -13.50746 -13.27568 -13.11315 -12.97063 -12.82783 -12.44234 -12.15444 -11.99882 -11.64705 -11.57772 -11.47125 -10.66920 -10.47602 -10.36656 -10.32394 -10.25791 -9.71665 -9.64669 -8.45380 -6.07793 -0.42727 0.04103 1.22305 1.31900 1.34974 1.45181 1.56791 1.78518 1.91780 1.95599 2.21072 2.69289 2.78992 3.01234 3.05098 3.11093 3.62463 3.80056 3.95273 3.98205 4.13817 4.37555 4.41335 4.42658 4.45767 4.53377 4.58482 4.65211 4.90678 4.92440 4.93695 5.10599 5.15970 5.23142 5.47325 5.50921 5.62660 5.70039 5.88177 6.19159 6.48294 6.64587 6.70641 6.78547 6.99865 7.20555 7.30050 7.78057 8.70964 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.034306 B = 0.001799 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.996491 B =15559.910739 C =16114.070210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.089 3.911 4 C 0.562 3.438 5 O -0.573 6.573 6 C 0.082 3.918 7 C -0.145 4.145 8 C 0.203 3.797 9 N -0.672 5.672 10 C 0.711 3.289 11 O -0.598 6.598 12 N -0.716 5.716 13 C 0.137 3.863 14 C 0.444 3.556 15 O -0.615 6.615 16 N -0.576 5.576 17 C -0.332 4.332 18 H 0.063 0.937 19 C -0.008 4.008 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.229 1.229 25 C -0.156 4.156 26 C 0.120 3.880 27 N -0.463 5.463 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.426 0.574 36 H 0.413 0.587 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.393 0.607 40 H 0.281 0.719 41 H 0.149 0.851 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.451 25.458 -4.002 32.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.333 5.333 3 C -0.053 4.053 4 C 0.350 3.650 5 O -0.452 6.452 6 C -0.055 4.055 7 C -0.169 4.169 8 C 0.098 3.902 9 N -0.321 5.321 10 C 0.412 3.588 11 O -0.477 6.477 12 N -0.373 5.373 13 C 0.009 3.991 14 C 0.231 3.769 15 O -0.501 6.501 16 N -0.216 5.216 17 C -0.461 4.461 18 H 0.081 0.919 19 C -0.208 4.208 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.182 1.182 23 H -0.200 1.200 24 H -0.152 1.152 25 C -0.179 4.179 26 C -0.038 4.038 27 N -0.177 5.177 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.167 0.833 35 H 0.265 0.735 36 H 0.251 0.749 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.229 0.771 40 H 0.091 0.909 41 H 0.167 0.833 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -21.056 25.784 -3.908 33.518 hybrid contribution 1.117 -1.831 0.224 2.156 sum -19.939 23.953 -3.684 31.383 Atomic orbital electron populations 1.21916 0.77603 1.03761 1.03470 1.47769 1.08115 1.06836 1.70532 1.22230 0.97033 0.82549 1.03473 1.18133 0.86195 0.83976 0.76728 1.90750 1.69500 1.32577 1.52418 1.20732 0.93767 0.89889 1.01160 1.21781 0.92383 1.00473 1.02246 1.17726 0.89924 0.87139 0.95387 1.42362 1.15638 1.10256 1.63798 1.15710 0.80516 0.83850 0.78762 1.90928 1.73205 1.30464 1.53083 1.44706 1.16448 1.12222 1.63944 1.20793 0.83127 0.93773 1.01370 1.20515 0.82615 0.90885 0.82845 1.90539 1.63741 1.45792 1.50077 1.41898 1.14927 1.10683 1.54116 1.19024 1.00104 0.87653 1.39341 0.91915 1.26082 0.97074 1.00336 0.97337 1.69780 1.16815 1.24106 1.45880 0.85441 0.78283 0.78754 0.79614 1.18193 1.20004 1.15225 1.22546 1.03157 0.92499 0.99710 1.23286 0.88179 0.99190 0.93145 1.68137 1.10978 1.26092 1.12481 0.91321 0.89995 0.89879 0.91527 0.89843 0.89552 0.83296 0.73518 0.74871 0.87148 0.87466 0.77126 0.90945 0.83332 0.78059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.66 127.77 1.36 2.24 16 2 N -0.60 -9.88 3.27 -874.97 -2.86 -12.74 16 3 C 0.09 0.97 9.15 127.77 1.17 2.13 16 4 C 0.56 12.77 7.65 86.89 0.66 13.44 16 5 O -0.57 -16.46 15.68 -3.73 -0.06 -16.51 16 6 C 0.08 1.71 6.56 41.84 0.27 1.99 16 7 C -0.14 -3.01 9.58 22.74 0.22 -2.79 16 8 C 0.20 4.17 6.31 38.45 0.24 4.41 16 9 N -0.67 -13.51 5.35 -316.73 -1.70 -15.20 16 10 C 0.71 18.18 8.32 179.06 1.49 19.67 16 11 O -0.60 -17.91 14.10 -3.99 -0.06 -17.97 16 12 N -0.72 -19.21 5.53 -482.31 -2.67 -21.88 16 13 C 0.14 3.99 6.15 85.63 0.53 4.52 16 14 C 0.44 18.14 7.85 87.66 0.69 18.83 16 15 O -0.62 -30.24 15.24 -3.06 -0.05 -30.28 16 16 N -0.58 -25.23 5.09 -306.98 -1.56 -26.79 16 17 C -0.33 -18.36 10.16 84.04 0.85 -17.51 16 18 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 19 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 20 N -0.93 -53.60 13.96 21.66 0.30 -53.30 16 21 Si 0.96 36.88 27.74 68.60 1.90 38.78 16 22 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.23 -7.34 6.52 99.48 0.65 -6.70 16 25 C -0.16 -2.94 8.73 22.55 0.20 -2.75 16 26 C 0.12 1.75 11.17 84.73 0.95 2.69 16 27 N -0.46 -7.83 6.17 -185.18 -1.14 -8.98 16 28 H 0.07 1.10 6.91 -2.38 -0.02 1.08 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.69 7.98 -2.39 -0.02 0.67 16 32 H 0.08 0.50 8.03 -2.39 -0.02 0.48 16 33 H 0.09 1.12 5.80 -2.38 -0.01 1.10 16 34 H 0.15 3.04 7.65 -2.91 -0.02 3.02 16 35 H 0.43 6.48 8.84 -92.70 -0.82 5.66 16 36 H 0.41 11.14 7.46 -92.71 -0.69 10.44 16 37 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.39 14.23 5.76 -92.71 -0.53 13.69 16 40 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.15 3.00 6.53 -2.91 -0.02 2.99 16 42 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -78.00 361.96 0.22 -77.78 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -0.99 Total: 40.19 kcal Atomic # 6 Polarization: 37.80 SS G_CDS: 9.10 Total: 46.90 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -9.63 Total: -138.89 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -0.16 Total: -64.76 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 1.90 Total: 38.78 kcal Total: -78.00 0.22 -77.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588249284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.615 kcal (2) G-P(sol) polarization free energy of solvation -78.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds