Wall clock time and date at job start Tue Mar 31 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99807 * 2 1 4 4 C 1.34780 * 119.99875 * 180.02562 * 2 1 3 5 5 O 1.21513 * 120.00047 * 354.46227 * 4 2 1 6 6 C 1.48156 * 119.99967 * 174.45658 * 4 2 1 7 7 C 1.39983 * 120.88886 * 150.78044 * 6 4 2 8 8 C 1.37994 * 119.16266 * 180.02562 * 7 6 4 9 9 N 1.31889 * 120.98674 * 359.73012 * 8 7 6 10 10 C 1.32277 * 121.95740 * 0.56803 * 9 8 7 11 11 N 1.39410 * 119.63188 * 179.70697 * 10 9 8 12 12 C 1.34774 * 120.00581 * 5.00833 * 11 10 9 13 13 O 1.21583 * 119.99380 * 355.18789 * 12 11 10 14 14 N 1.34774 * 120.00525 * 174.92130 * 12 11 10 15 15 C 1.46504 * 120.00081 * 180.27525 * 14 12 11 16 16 C 1.50702 * 109.46990 * 179.97438 * 15 14 12 17 17 O 1.21295 * 119.99859 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99904 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99979 * 180.02562 * 18 16 15 20 20 H 1.08009 * 119.99931 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00309 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00359 * 179.97438 * 21 19 18 23 23 Si 1.86810 * 119.99837 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46875 * 89.99585 * 23 21 19 25 25 H 1.48499 * 109.46819 * 209.99829 * 23 21 19 26 26 H 1.48507 * 109.46748 * 329.99635 * 23 21 19 27 27 C 1.39018 * 120.73040 * 359.43193 * 10 9 8 28 28 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47205 * 299.99470 * 1 2 3 30 30 H 1.08999 * 109.47346 * 60.00180 * 1 2 3 31 31 H 1.08999 * 109.47471 * 271.79873 * 3 2 1 32 32 H 1.09000 * 109.47204 * 31.80544 * 3 2 1 33 33 H 1.09004 * 109.46669 * 151.80617 * 3 2 1 34 34 H 1.08005 * 120.41967 * 0.02562 * 7 6 4 35 35 H 1.07995 * 119.50425 * 179.97438 * 8 7 6 36 36 H 0.97002 * 120.00189 * 185.00648 * 11 10 9 37 37 H 0.97000 * 119.99975 * 0.26613 * 14 12 11 38 38 H 1.09000 * 109.47091 * 299.99433 * 15 14 12 39 39 H 1.08996 * 109.47011 * 59.99247 * 15 14 12 40 40 H 0.97000 * 119.99941 * 359.97438 * 18 16 15 41 41 H 0.96998 * 119.99647 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.53284 * 180.30231 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5356 -2.2172 0.1006 6 6 3.6153 -1.1702 -0.1245 7 6 4.3825 -2.1908 0.4493 8 6 5.7553 -2.1580 0.3124 9 7 6.3483 -1.1857 -0.3527 10 6 5.6647 -0.1979 -0.9064 11 7 6.3419 0.8085 -1.5935 12 6 7.6740 0.7199 -1.7780 13 8 8.2985 -0.1917 -1.2709 14 7 8.3130 1.6387 -2.5290 15 6 9.7601 1.5389 -2.7344 16 6 10.2238 2.6787 -3.6045 17 8 9.4241 3.4944 -4.0124 18 7 11.5271 2.7922 -3.9284 19 6 11.9489 3.8293 -4.7195 20 1 11.2368 4.5552 -5.0835 21 6 13.2926 3.9467 -5.0532 22 7 13.6970 4.9406 -5.8119 23 14 14.5243 2.6908 -4.4243 24 1 14.6356 1.5758 -5.3987 25 1 15.8506 3.3381 -4.2589 26 1 14.0657 2.1604 -3.1152 27 6 4.2782 -0.1552 -0.8156 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.3512 1.5995 -1.0271 32 1 1.6228 2.0200 0.5416 33 1 3.1635 1.1304 0.4856 34 1 3.9062 -2.9938 0.9922 35 1 6.3526 -2.9424 0.7532 36 1 5.8543 1.5727 -1.9390 37 1 7.8148 2.3660 -2.9336 38 1 10.2680 1.5868 -1.7711 39 1 9.9935 0.5921 -3.2214 40 1 12.1667 2.1405 -3.6013 41 1 14.6350 5.0222 -6.0450 42 1 3.7229 0.6502 -1.2731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588275932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:32 Heat of formation + Delta-G solvation = -47.432117 kcal Electronic energy + Delta-G solvation = -27420.724386 eV Core-core repulsion = 23208.673498 eV Total energy + Delta-G solvation = -4212.050888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20193 -41.23976 -40.41809 -39.73728 -36.83711 -36.33644 -35.99878 -35.31369 -33.82508 -33.78603 -31.37987 -29.33747 -28.87176 -27.79863 -26.31155 -25.04334 -24.23844 -22.41401 -21.45836 -20.93243 -20.51560 -19.80758 -18.99779 -17.90215 -17.54638 -17.37244 -17.10631 -17.00240 -16.94966 -16.67871 -16.21403 -16.08978 -15.97774 -15.45154 -15.12643 -14.94408 -14.87491 -14.45362 -14.30234 -14.29187 -13.99266 -13.68358 -13.50168 -13.45578 -13.01440 -12.95946 -12.70452 -12.43033 -11.99285 -11.93858 -11.65029 -11.56458 -11.38435 -10.87584 -10.63708 -10.32316 -10.20501 -10.20020 -9.79575 -9.31737 -8.44252 -6.05959 -0.29315 0.02738 1.25422 1.32897 1.35581 1.45334 1.61424 1.80625 1.87326 2.08581 2.21619 2.67679 2.84416 3.04992 3.12430 3.19280 3.58769 3.83615 3.88268 3.99652 4.09589 4.21850 4.40355 4.43329 4.45965 4.46566 4.57721 4.61320 4.72504 4.88165 4.93759 4.98551 5.12536 5.23641 5.37649 5.49139 5.60019 5.74784 5.89937 6.13117 6.50005 6.66632 6.79932 6.89630 7.11259 7.30533 7.48701 7.79462 8.71958 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.001924 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.250661 B =14551.616022 C =15442.520247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.609 5.609 3 C 0.058 3.942 4 C 0.558 3.442 5 O -0.569 6.569 6 C -0.069 4.069 7 C -0.153 4.153 8 C 0.127 3.873 9 N -0.497 5.497 10 C 0.364 3.636 11 N -0.655 5.655 12 C 0.698 3.302 13 O -0.569 6.569 14 N -0.719 5.719 15 C 0.139 3.861 16 C 0.447 3.553 17 O -0.613 6.613 18 N -0.578 5.578 19 C -0.330 4.330 20 H 0.065 0.935 21 C -0.008 4.008 22 N -0.926 5.926 23 Si 0.957 3.043 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.232 1.232 27 C -0.167 4.167 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.153 0.847 35 H 0.184 0.816 36 H 0.433 0.567 37 H 0.412 0.588 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.392 0.608 41 H 0.281 0.719 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.100 -10.714 14.744 29.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.341 5.341 3 C -0.084 4.084 4 C 0.346 3.654 5 O -0.449 6.449 6 C -0.080 4.080 7 C -0.175 4.175 8 C -0.030 4.030 9 N -0.213 5.213 10 C 0.132 3.868 11 N -0.305 5.305 12 C 0.397 3.603 13 O -0.443 6.443 14 N -0.378 5.378 15 C 0.011 3.989 16 C 0.234 3.766 17 O -0.499 6.499 18 N -0.218 5.218 19 C -0.459 4.459 20 H 0.083 0.917 21 C -0.208 4.208 22 N -0.565 5.565 23 Si 0.777 3.223 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.155 1.155 27 C -0.190 4.190 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.171 0.829 35 H 0.201 0.799 36 H 0.273 0.727 37 H 0.250 0.750 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.228 0.772 41 H 0.090 0.910 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -22.242 -11.311 14.713 28.968 hybrid contribution -0.208 0.474 -0.405 0.657 sum -22.450 -10.837 14.309 28.744 Atomic orbital electron populations 1.21900 0.77390 1.03800 1.03600 1.47742 1.08276 1.06323 1.71733 1.22536 0.98053 0.84032 1.03745 1.18392 0.86793 0.83923 0.76271 1.90765 1.70029 1.32644 1.51460 1.20011 0.93020 0.95834 0.99162 1.22286 0.94695 0.99160 1.01344 1.23005 0.92053 0.94976 0.92963 1.67509 1.41189 1.02774 1.09786 1.18245 0.88064 0.88482 0.92052 1.42424 1.06629 1.24317 1.57154 1.15932 0.81928 0.82495 0.79929 1.91024 1.65594 1.35011 1.52674 1.44689 1.08276 1.30679 1.54162 1.20711 0.81036 0.96970 1.00228 1.20467 0.82599 0.88471 0.85021 1.90523 1.54008 1.46198 1.59150 1.41923 1.07726 1.26025 1.46150 1.19026 0.94258 1.05333 1.27238 0.91676 1.26047 0.99022 0.99389 0.96354 1.69777 1.17932 1.32213 1.36628 0.85469 0.77971 0.78390 0.80456 1.18215 1.19959 1.15512 1.22164 0.91830 1.01706 1.03332 0.91373 0.89984 0.89754 0.89681 0.88426 0.90195 0.82942 0.79942 0.72666 0.74953 0.87846 0.87947 0.77240 0.90973 0.80036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.69 127.77 1.37 1.99 16 2 N -0.61 -6.93 3.27 -875.00 -2.86 -9.80 16 3 C 0.06 0.26 8.81 127.77 1.13 1.38 16 4 C 0.56 10.24 7.48 86.88 0.65 10.89 16 5 O -0.57 -14.65 16.12 -3.76 -0.06 -14.71 16 6 C -0.07 -1.18 5.36 -19.90 -0.11 -1.29 16 7 C -0.15 -2.70 9.69 22.64 0.22 -2.48 16 8 C 0.13 2.52 11.17 84.63 0.94 3.46 16 9 N -0.50 -12.87 7.85 -193.20 -1.52 -14.38 16 10 C 0.36 7.60 7.42 132.93 0.99 8.58 16 11 N -0.65 -12.89 5.39 -322.26 -1.74 -14.63 16 12 C 0.70 19.50 8.52 179.06 1.53 21.02 16 13 O -0.57 -20.08 14.60 -3.98 -0.06 -20.14 16 14 N -0.72 -20.07 5.53 -482.30 -2.67 -22.74 16 15 C 0.14 4.30 6.15 85.63 0.53 4.82 16 16 C 0.45 18.57 7.85 87.66 0.69 19.26 16 17 O -0.61 -29.98 15.24 -3.08 -0.05 -30.02 16 18 N -0.58 -25.76 5.09 -306.98 -1.56 -27.32 16 19 C -0.33 -18.28 10.16 84.04 0.85 -17.42 16 20 H 0.07 4.26 7.39 -2.91 -0.02 4.24 16 21 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 22 N -0.93 -53.66 13.96 21.66 0.30 -53.36 16 23 Si 0.96 37.55 27.74 68.60 1.90 39.45 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 27 C -0.17 -2.38 7.53 22.77 0.17 -2.21 16 28 H 0.07 0.89 6.91 -2.39 -0.02 0.88 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.08 6.86 -2.39 -0.02 0.06 16 32 H 0.10 0.08 8.09 -2.39 -0.02 0.06 16 33 H 0.08 0.46 5.73 -2.39 -0.01 0.45 16 34 H 0.15 2.37 7.98 -2.91 -0.02 2.35 16 35 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.43 4.91 8.72 -92.71 -0.81 4.10 16 37 H 0.41 10.97 7.46 -92.71 -0.69 10.28 16 38 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.39 14.68 5.76 -92.71 -0.53 14.15 16 41 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.18 1.25 4.94 -2.91 -0.01 1.24 16 Total: -1.00 -84.69 360.64 0.14 -84.55 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.97 Total: 35.04 kcal Atomic # 6 Polarization: 38.63 SS G_CDS: 9.42 Total: 48.05 kcal Atomic # 7 Polarization: -132.18 SS G_CDS: -10.05 Total: -142.23 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: -0.17 Total: -64.87 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.90 Total: 39.45 kcal Total: -84.69 0.14 -84.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588275932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.114 kcal (2) G-P(sol) polarization free energy of solvation -84.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds