Wall clock time and date at job start Tue Mar 31 2020 18:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99869 * 2 1 4 4 C 1.52995 * 109.47102 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47484 * 67.05709 * 4 3 2 6 6 C 1.46901 * 110.99689 * 290.01883 * 5 4 3 7 7 C 1.50703 * 109.46783 * 299.69180 * 6 5 4 8 8 H 1.07995 * 120.00252 * 354.88585 * 7 6 5 9 9 C 1.37879 * 119.99639 * 174.87894 * 7 6 5 10 10 N 1.31511 * 119.99886 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99886 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46854 * 90.00499 * 11 9 7 13 13 H 1.48498 * 109.47094 * 210.00481 * 11 9 7 14 14 H 1.48497 * 109.47031 * 330.00648 * 11 9 7 15 15 C 1.46906 * 110.99879 * 53.96784 * 5 4 3 16 16 C 1.50700 * 109.46734 * 66.04934 * 15 5 4 17 17 N 1.30974 * 126.43896 * 89.71515 * 16 15 5 18 18 C 1.35233 * 105.57991 * 179.91263 * 17 16 15 19 19 C 1.48366 * 126.41216 * 180.10645 * 18 17 16 20 20 C 1.39340 * 120.13868 * 359.97438 * 19 18 17 21 21 C 1.37980 * 119.90559 * 179.76941 * 20 19 18 22 22 C 1.38379 * 120.17580 * 0.51721 * 21 20 19 23 23 C 1.38222 * 120.27402 * 359.73490 * 22 21 20 24 24 C 1.38314 * 120.09505 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.09306 * 179.97438 * 24 23 22 26 26 N 1.30787 * 107.16613 * 0.34578 * 18 17 16 27 27 O 1.21283 * 110.09353 * 359.78415 * 26 18 17 28 28 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47216 * 300.00514 * 1 2 3 30 30 H 1.08992 * 109.47124 * 60.00366 * 1 2 3 31 31 H 1.08998 * 109.47633 * 59.99345 * 3 2 1 32 32 H 1.09009 * 109.46810 * 299.99607 * 3 2 1 33 33 H 1.09003 * 109.47185 * 307.05325 * 4 3 2 34 34 H 1.09004 * 109.47056 * 187.05402 * 4 3 2 35 35 H 1.08990 * 109.47479 * 59.69551 * 6 5 4 36 36 H 1.08998 * 109.46542 * 179.69671 * 6 5 4 37 37 H 0.97008 * 119.99916 * 179.97438 * 10 9 7 38 38 H 1.08988 * 109.46799 * 186.04609 * 15 5 4 39 39 H 1.08998 * 109.46987 * 306.05107 * 15 5 4 40 40 H 1.08002 * 120.04754 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.91193 * 180.25400 * 21 20 19 42 42 H 1.07998 * 119.86354 * 179.76681 * 22 21 20 43 43 H 1.07998 * 119.95879 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9805 0.6081 -1.2764 6 6 3.6004 -0.8074 -1.3753 7 6 4.2435 -1.5798 -0.2524 8 1 4.9367 -1.0879 0.4138 9 6 3.9468 -2.9147 -0.0755 10 7 3.1030 -3.5138 -0.8870 11 14 4.7433 -3.8720 1.3168 12 1 3.8941 -3.7779 2.5314 13 1 4.8848 -5.2962 0.9207 14 1 6.0842 -3.3028 1.6051 15 6 3.4539 1.3753 -2.4131 16 6 4.0605 2.7548 -2.4122 17 7 5.1683 3.1179 -3.0091 18 6 5.3128 4.4347 -2.7369 19 6 6.4186 5.3121 -3.1934 20 6 7.4428 4.7935 -3.9831 21 6 8.4664 5.6150 -4.4089 22 6 8.4840 6.9500 -4.0450 23 6 7.4745 7.4710 -3.2576 24 6 6.4404 6.6588 -2.8285 25 9 5.4541 7.1679 -2.0585 26 7 4.2979 4.7884 -1.9917 27 8 3.5719 3.8365 -1.7972 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8491 0.5386 0.8193 34 1 3.9782 2.1728 0.1256 35 1 2.5166 -0.8984 -1.3048 36 1 3.9373 -1.2080 -2.3314 37 1 2.8945 -4.4530 -0.7628 38 1 3.7081 0.8672 -3.3432 39 1 2.3702 1.4548 -2.3269 40 1 7.4334 3.7509 -4.2648 41 1 9.2582 5.2140 -5.0243 42 1 9.2896 7.5875 -4.3780 43 1 7.4932 8.5137 -2.9769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614908430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:48 Heat of formation + Delta-G solvation = 29.614402 kcal Electronic energy + Delta-G solvation = -28740.936567 eV Core-core repulsion = 24512.306704 eV Total energy + Delta-G solvation = -4228.629862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.07662 -45.39940 -39.24662 -38.37236 -36.12509 -35.65893 -33.17305 -32.31145 -31.18880 -30.57625 -29.23886 -28.00443 -26.02597 -25.07493 -24.82084 -23.38566 -22.73879 -22.51831 -21.27128 -19.82089 -18.04832 -17.97302 -17.38852 -16.57162 -16.29808 -16.11731 -16.07063 -15.94630 -15.79643 -14.91340 -14.71910 -14.50113 -14.23166 -14.14864 -13.99570 -13.46283 -13.34507 -12.92325 -12.68382 -12.23217 -12.09593 -12.04748 -11.77099 -11.62949 -11.52149 -11.46743 -11.17614 -11.13563 -10.91520 -10.72071 -10.69620 -10.27299 -10.23541 -9.85440 -9.23147 -9.14888 -9.04914 -8.85860 -8.34786 -7.31467 -5.93459 -3.91428 0.40219 0.86052 1.40179 2.41536 2.95703 3.36035 3.37317 3.41104 3.43327 3.47385 3.85904 4.00437 4.32539 4.46030 4.50036 4.58059 4.86649 4.88940 4.91986 5.11479 5.34853 5.40155 5.44387 5.47668 5.59554 5.63868 5.71733 5.74182 5.79225 5.82705 5.85759 5.91690 5.97402 6.01254 6.05187 6.15773 6.16045 6.48441 6.66365 7.16925 7.57340 7.77534 7.78732 7.97608 8.19156 8.24624 8.53479 9.12117 9.69765 11.17889 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016140 B = 0.002839 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.416851 B = 9860.498833 C =10918.770105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.344 6.344 3 C 0.023 3.977 4 C 0.057 3.943 5 N -0.523 5.523 6 C 0.184 3.816 7 C -0.496 4.496 8 H 0.058 0.942 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.892 3.108 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.133 3.867 16 C 0.215 3.785 17 N -0.463 5.463 18 C 0.197 3.803 19 C -0.049 4.049 20 C -0.047 4.047 21 C -0.134 4.134 22 C -0.076 4.076 23 C -0.160 4.160 24 C 0.129 3.871 25 F -0.122 7.122 26 N -0.371 5.371 27 O 0.077 5.923 28 H 0.083 0.917 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.024 0.976 37 H 0.258 0.742 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 18.975 -6.300 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.262 6.262 3 C -0.056 4.056 4 C -0.072 4.072 5 N -0.248 5.248 6 C 0.061 3.939 7 C -0.535 4.535 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.535 5.535 11 Si 0.720 3.280 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.200 1.200 15 C 0.002 3.998 16 C -0.007 4.007 17 N -0.196 5.196 18 C -0.072 4.072 19 C -0.052 4.052 20 C -0.067 4.067 21 C -0.152 4.152 22 C -0.095 4.095 23 C -0.179 4.179 24 C 0.108 3.892 25 F -0.101 7.101 26 N -0.077 5.077 27 O 0.016 5.984 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.508 19.391 -6.258 20.869 hybrid contribution -1.012 -0.379 1.042 1.501 sum 3.496 19.012 -5.216 20.022 Atomic orbital electron populations 1.22695 0.83383 1.02393 0.98484 1.88462 1.17611 1.25451 1.94641 1.23305 0.96913 0.86169 0.99215 1.22294 0.89995 0.99556 0.95353 1.62449 1.57941 1.05907 0.98514 1.20122 0.97718 0.78486 0.97589 1.20961 1.25063 0.94262 1.13168 0.92335 1.24843 0.95276 0.97605 0.96259 1.69946 1.34742 1.11155 1.37663 0.86601 0.79718 0.79127 0.82525 1.20890 1.21465 1.20000 1.20769 0.96905 0.82263 0.99826 1.29108 0.89244 0.93525 0.88794 1.71996 1.15377 1.08212 1.23978 1.23628 0.95837 0.89814 0.97958 1.17436 0.94527 0.90053 1.03145 1.21229 0.91016 1.01196 0.93211 1.21210 0.99059 0.93636 1.01279 1.21182 0.97342 0.95564 0.95417 1.21086 0.94537 1.00652 1.01606 1.17708 0.87463 0.90871 0.93152 1.91575 1.59491 1.86951 1.72034 1.74997 1.05001 1.09454 1.18268 1.85295 1.42632 1.14633 1.55823 0.89837 0.95196 0.95133 0.93925 0.94044 0.87697 0.91974 0.93810 0.95798 0.93210 0.86508 0.91179 0.83417 0.84422 0.84524 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.34 -6.79 7.58 -35.23 -0.27 -7.06 16 3 C 0.02 0.38 5.70 37.16 0.21 0.59 16 4 C 0.06 1.06 5.46 -3.82 -0.02 1.04 16 5 N -0.52 -10.59 4.74 -237.52 -1.13 -11.71 16 6 C 0.18 4.47 4.29 -4.97 -0.02 4.45 16 7 C -0.50 -13.40 8.21 -34.44 -0.28 -13.68 16 8 H 0.06 1.59 6.98 -52.49 -0.37 1.23 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 11 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.13 2.21 5.24 -4.97 -0.03 2.18 16 16 C 0.21 3.55 7.07 -12.98 -0.09 3.46 16 17 N -0.46 -7.92 11.26 -9.88 -0.11 -8.03 16 18 C 0.20 3.25 7.79 -156.11 -1.22 2.03 16 19 C -0.05 -0.67 5.88 -104.83 -0.62 -1.29 16 20 C -0.05 -0.52 9.70 -39.27 -0.38 -0.90 16 21 C -0.13 -1.07 10.03 -39.62 -0.40 -1.47 16 22 C -0.08 -0.55 10.04 -39.54 -0.40 -0.95 16 23 C -0.16 -1.44 10.02 -39.56 -0.40 -1.83 16 24 C 0.13 1.62 7.28 -39.07 -0.28 1.34 16 25 F -0.12 -1.76 15.82 2.25 0.04 -1.72 16 26 N -0.37 -6.36 10.87 30.97 0.34 -6.02 16 27 O 0.08 1.27 10.90 18.02 0.20 1.47 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.64 5.79 -51.92 -0.30 0.34 16 33 H 0.10 2.20 6.33 -51.93 -0.33 1.88 16 34 H 0.06 1.08 7.16 -51.93 -0.37 0.71 16 35 H 0.04 1.12 5.29 -51.93 -0.27 0.85 16 36 H 0.02 0.62 8.05 -51.93 -0.42 0.21 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.12 1.87 8.01 -51.94 -0.42 1.45 16 39 H 0.07 1.07 5.71 -51.93 -0.30 0.77 16 40 H 0.15 1.63 7.88 -52.49 -0.41 1.21 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -31.74 364.73 -7.91 -39.65 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.28 Total: -1.63 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.90 Total: -1.88 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.16 Total: -50.83 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.07 Total: -5.59 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.74 -7.91 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614908430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.264 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds