Wall clock time and date at job start Tue Mar 31 2020 18:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99869 * 2 1 4 4 C 1.52995 * 109.47102 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47484 * 67.05709 * 4 3 2 6 6 C 1.46901 * 110.99689 * 290.01883 * 5 4 3 7 7 C 1.50703 * 109.46783 * 299.69180 * 6 5 4 8 8 H 1.07995 * 120.00252 * 354.88585 * 7 6 5 9 9 C 1.37879 * 119.99639 * 174.87894 * 7 6 5 10 10 N 1.31511 * 119.99886 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99886 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46854 * 90.00499 * 11 9 7 13 13 H 1.48498 * 109.47094 * 210.00481 * 11 9 7 14 14 H 1.48497 * 109.47031 * 330.00648 * 11 9 7 15 15 C 1.46906 * 110.99879 * 53.96784 * 5 4 3 16 16 C 1.50700 * 109.46734 * 66.04934 * 15 5 4 17 17 N 1.30974 * 126.43896 * 89.71515 * 16 15 5 18 18 C 1.35233 * 105.57991 * 179.91263 * 17 16 15 19 19 C 1.48366 * 126.41216 * 180.10645 * 18 17 16 20 20 C 1.39340 * 120.13868 * 359.97438 * 19 18 17 21 21 C 1.37980 * 119.90559 * 179.76941 * 20 19 18 22 22 C 1.38379 * 120.17580 * 0.51721 * 21 20 19 23 23 C 1.38222 * 120.27402 * 359.73490 * 22 21 20 24 24 C 1.38314 * 120.09505 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.09306 * 179.97438 * 24 23 22 26 26 N 1.30787 * 107.16613 * 0.34578 * 18 17 16 27 27 O 1.21283 * 110.09353 * 359.78415 * 26 18 17 28 28 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47216 * 300.00514 * 1 2 3 30 30 H 1.08992 * 109.47124 * 60.00366 * 1 2 3 31 31 H 1.08998 * 109.47633 * 59.99345 * 3 2 1 32 32 H 1.09009 * 109.46810 * 299.99607 * 3 2 1 33 33 H 1.09003 * 109.47185 * 307.05325 * 4 3 2 34 34 H 1.09004 * 109.47056 * 187.05402 * 4 3 2 35 35 H 1.08990 * 109.47479 * 59.69551 * 6 5 4 36 36 H 1.08998 * 109.46542 * 179.69671 * 6 5 4 37 37 H 0.97008 * 119.99916 * 179.97438 * 10 9 7 38 38 H 1.08988 * 109.46799 * 186.04609 * 15 5 4 39 39 H 1.08998 * 109.46987 * 306.05107 * 15 5 4 40 40 H 1.08002 * 120.04754 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.91193 * 180.25400 * 21 20 19 42 42 H 1.07998 * 119.86354 * 179.76681 * 22 21 20 43 43 H 1.07998 * 119.95879 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9805 0.6081 -1.2764 6 6 3.6004 -0.8074 -1.3753 7 6 4.2435 -1.5798 -0.2524 8 1 4.9367 -1.0879 0.4138 9 6 3.9468 -2.9147 -0.0755 10 7 3.1030 -3.5138 -0.8870 11 14 4.7433 -3.8720 1.3168 12 1 3.8941 -3.7779 2.5314 13 1 4.8848 -5.2962 0.9207 14 1 6.0842 -3.3028 1.6051 15 6 3.4539 1.3753 -2.4131 16 6 4.0605 2.7548 -2.4122 17 7 5.1683 3.1179 -3.0091 18 6 5.3128 4.4347 -2.7369 19 6 6.4186 5.3121 -3.1934 20 6 7.4428 4.7935 -3.9831 21 6 8.4664 5.6150 -4.4089 22 6 8.4840 6.9500 -4.0450 23 6 7.4745 7.4710 -3.2576 24 6 6.4404 6.6588 -2.8285 25 9 5.4541 7.1679 -2.0585 26 7 4.2979 4.7884 -1.9917 27 8 3.5719 3.8365 -1.7972 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8491 0.5386 0.8193 34 1 3.9782 2.1728 0.1256 35 1 2.5166 -0.8984 -1.3048 36 1 3.9373 -1.2080 -2.3314 37 1 2.8945 -4.4530 -0.7628 38 1 3.7081 0.8672 -3.3432 39 1 2.3702 1.4548 -2.3269 40 1 7.4334 3.7509 -4.2648 41 1 9.2582 5.2140 -5.0243 42 1 9.2896 7.5875 -4.3780 43 1 7.4932 8.5137 -2.9769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614908430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:47 Heat of formation + Delta-G solvation = 7.853276 kcal Electronic energy + Delta-G solvation = -28741.880200 eV Core-core repulsion = 24512.306704 eV Total energy + Delta-G solvation = -4229.573496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.03680 -46.68074 -40.02397 -39.86441 -37.56629 -36.91880 -34.84534 -33.93060 -32.03221 -31.44930 -30.73167 -29.69721 -27.38856 -26.66388 -25.95715 -24.58029 -24.20269 -23.52988 -22.48988 -21.31022 -19.32489 -19.04289 -18.45758 -18.27321 -17.55829 -17.44219 -17.36414 -16.98573 -16.76190 -16.62530 -16.05901 -15.78298 -15.59663 -15.46921 -14.95946 -14.71224 -14.38748 -14.15948 -13.87114 -13.78076 -13.63387 -13.15280 -12.98082 -12.88597 -12.85653 -12.81513 -12.63316 -12.51964 -12.47418 -12.35978 -12.10346 -11.89182 -11.76905 -11.49735 -11.14360 -10.55598 -10.30662 -10.01686 -9.74284 -8.95965 -8.05297 -6.08634 -0.52980 0.10966 0.18467 1.28071 1.45214 1.45636 1.55508 1.64934 2.30384 2.49472 2.58290 2.76034 2.98908 3.11278 3.30175 3.34615 3.64628 3.74657 4.00376 4.10464 4.11332 4.22716 4.27758 4.35275 4.37052 4.47440 4.50694 4.57180 4.61781 4.65794 4.68350 4.84931 4.91660 5.00206 5.03627 5.07991 5.25978 5.35169 5.38672 5.69749 5.72414 5.78029 6.13357 6.26265 6.45706 6.61103 6.97765 7.03122 7.55874 9.05753 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016140 B = 0.002839 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.416851 B = 9860.498833 C =10918.770105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.385 6.385 3 C 0.027 3.973 4 C 0.060 3.940 5 N -0.536 5.536 6 C 0.201 3.799 7 C -0.504 4.504 8 H 0.050 0.950 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.952 3.048 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.139 3.861 16 C 0.215 3.785 17 N -0.477 5.477 18 C 0.197 3.803 19 C -0.086 4.086 20 C -0.058 4.058 21 C -0.122 4.122 22 C -0.057 4.057 23 C -0.154 4.154 24 C 0.103 3.897 25 F -0.141 7.141 26 N -0.390 5.390 27 O 0.077 5.923 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.035 0.965 36 H -0.001 1.001 37 H 0.259 0.741 38 H 0.121 0.879 39 H 0.089 0.911 40 H 0.140 0.860 41 H 0.172 0.828 42 H 0.182 0.818 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 20.969 -6.769 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.304 6.304 3 C -0.051 4.051 4 C -0.068 4.068 5 N -0.261 5.261 6 C 0.077 3.923 7 C -0.543 4.543 8 H 0.068 0.932 9 C -0.185 4.185 10 N -0.566 5.566 11 Si 0.778 3.222 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.197 1.197 15 C 0.010 3.990 16 C -0.006 4.006 17 N -0.210 5.210 18 C -0.072 4.072 19 C -0.089 4.089 20 C -0.078 4.078 21 C -0.140 4.140 22 C -0.075 4.075 23 C -0.172 4.172 24 C 0.082 3.918 25 F -0.120 7.120 26 N -0.098 5.098 27 O 0.018 5.982 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.017 0.983 37 H 0.068 0.932 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.158 0.842 41 H 0.189 0.811 42 H 0.199 0.801 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.060 21.400 -6.719 23.234 hybrid contribution -1.394 -0.870 1.112 1.985 sum 4.666 20.530 -5.607 21.787 Atomic orbital electron populations 1.22815 0.81413 1.02516 1.00422 1.88371 1.19935 1.27101 1.94995 1.23280 0.95241 0.85588 1.01023 1.22195 0.91801 0.99168 0.93619 1.62217 1.59030 1.04562 1.00315 1.19713 0.96687 0.80600 0.95315 1.21236 1.24716 0.94758 1.13570 0.93152 1.25565 0.95889 0.98606 0.98456 1.70051 1.36004 1.11388 1.39172 0.85660 0.78886 0.77798 0.79847 1.20444 1.21067 1.19659 1.20706 0.97833 0.81923 0.98566 1.28947 0.89275 0.93457 0.88966 1.71993 1.15640 1.08904 1.24463 1.24202 0.96196 0.89794 0.97051 1.17709 0.95076 0.90557 1.05582 1.21335 0.91541 1.01480 0.93416 1.21634 0.98359 0.93743 1.00275 1.21728 0.97205 0.95540 0.93054 1.21475 0.93444 1.01452 1.00834 1.18105 0.88434 0.91079 0.94190 1.91517 1.60571 1.87104 1.72792 1.74975 1.05725 1.09670 1.19396 1.85267 1.42621 1.14468 1.55826 0.90717 0.93093 0.93249 0.91833 0.92287 0.90420 0.90750 0.94774 0.98275 0.93207 0.86131 0.89334 0.84198 0.81089 0.80086 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.99 16 2 O -0.38 -15.17 7.58 -148.98 -1.13 -16.30 16 3 C 0.03 0.88 5.70 71.98 0.41 1.29 16 4 C 0.06 2.29 5.46 86.30 0.47 2.76 16 5 N -0.54 -22.10 4.74 -905.36 -4.29 -26.39 16 6 C 0.20 10.06 4.29 85.56 0.37 10.43 16 7 C -0.50 -27.87 8.21 25.60 0.21 -27.66 16 8 H 0.05 2.81 6.98 -2.91 -0.02 2.79 16 9 C 0.01 0.73 5.46 84.66 0.46 1.19 16 10 N -0.93 -54.25 13.29 21.45 0.28 -53.97 16 11 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 15 C 0.14 4.67 5.24 85.56 0.45 5.12 16 16 C 0.21 7.18 7.07 88.36 0.62 7.81 16 17 N -0.48 -16.62 11.26 -302.48 -3.41 -20.03 16 18 C 0.20 6.63 7.79 137.27 1.07 7.70 16 19 C -0.09 -2.37 5.88 -20.00 -0.12 -2.49 16 20 C -0.06 -1.22 9.70 22.47 0.22 -1.00 16 21 C -0.12 -1.54 10.03 22.24 0.22 -1.32 16 22 C -0.06 -0.57 10.04 22.30 0.22 -0.34 16 23 C -0.15 -2.32 10.02 22.28 0.22 -2.09 16 24 C 0.10 2.52 7.28 22.60 0.16 2.69 16 25 F -0.14 -4.11 15.82 44.97 0.71 -3.40 16 26 N -0.39 -13.62 10.87 -59.10 -0.64 -14.26 16 27 O 0.08 2.56 10.90 74.54 0.81 3.37 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.73 5.79 -2.38 -0.01 1.71 16 33 H 0.08 3.35 6.33 -2.39 -0.02 3.34 16 34 H 0.07 2.60 7.16 -2.39 -0.02 2.58 16 35 H 0.03 1.81 5.29 -2.39 -0.01 1.79 16 36 H 0.00 -0.04 8.05 -2.39 -0.02 -0.06 16 37 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 38 H 0.12 3.93 8.01 -2.39 -0.02 3.91 16 39 H 0.09 2.65 5.71 -2.39 -0.01 2.63 16 40 H 0.14 3.08 7.88 -2.91 -0.02 3.06 16 41 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 42 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 43 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -71.25 364.73 1.66 -69.59 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.05 Total: 8.65 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 6.25 Total: 6.05 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -8.05 Total: -114.66 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.32 Total: -12.93 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.71 Total: -3.40 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -71.25 1.66 -69.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614908430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.440 kcal (2) G-P(sol) polarization free energy of solvation -71.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds