Wall clock time and date at job start Tue Mar 31 2020 18:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99543 * 2 1 4 4 C 1.53001 * 109.46810 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47091 * 65.00278 * 4 3 2 6 6 C 1.46497 * 120.00034 * 270.00216 * 5 4 3 7 7 C 1.50700 * 109.46701 * 269.99630 * 6 5 4 8 8 H 1.08000 * 120.00342 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99613 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00157 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99714 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47225 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47006 * 120.00172 * 11 9 7 14 14 H 1.48499 * 109.47125 * 240.00035 * 11 9 7 15 15 C 1.34783 * 119.99786 * 89.99571 * 5 4 3 16 16 O 1.21276 * 119.99886 * 0.02562 * 15 5 4 17 17 C 1.50700 * 119.99570 * 180.02562 * 15 5 4 18 18 N 1.46504 * 109.46774 * 180.02562 * 17 15 5 19 19 N 1.40157 * 126.01005 * 265.31743 * 18 17 15 20 20 H 0.97006 * 125.46105 * 359.96684 * 19 18 17 21 21 C 1.34332 * 109.08786 * 180.12460 * 19 18 17 22 22 C 1.38400 * 108.49667 * 359.60554 * 21 19 18 23 23 C 1.46806 * 134.77252 * 180.24810 * 22 21 19 24 24 O 1.22109 * 121.29868 * 0.02562 * 23 22 21 25 25 N 1.34404 * 117.40641 * 179.97438 * 23 22 21 26 26 C 1.31380 * 120.94628 * 359.97438 * 25 23 22 27 27 N 1.32040 * 123.73567 * 0.02562 * 26 25 23 28 28 C 1.32380 * 121.67534 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46547 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47203 * 299.99817 * 1 2 3 31 31 H 1.09002 * 109.46985 * 59.99777 * 1 2 3 32 32 H 1.08998 * 109.46919 * 60.00761 * 3 2 1 33 33 H 1.09000 * 109.47085 * 300.00044 * 3 2 1 34 34 H 1.08999 * 109.47615 * 305.00589 * 4 3 2 35 35 H 1.08998 * 109.46976 * 185.00357 * 4 3 2 36 36 H 1.08997 * 109.47023 * 29.99446 * 6 5 4 37 37 H 1.09004 * 109.47296 * 149.99812 * 6 5 4 38 38 H 0.97002 * 119.99910 * 180.02562 * 10 9 7 39 39 H 1.08995 * 109.47358 * 60.00066 * 17 15 5 40 40 H 1.08997 * 109.46691 * 300.00037 * 17 15 5 41 41 H 1.08002 * 125.75582 * 179.87710 * 21 19 18 42 42 H 1.07989 * 118.13310 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3404 7 6 5.5018 -1.2979 -0.9414 8 1 6.2201 -0.5459 -0.6499 9 6 5.8611 -2.6290 -0.9475 10 7 4.9862 -3.5447 -1.3020 11 14 7.5911 -3.1316 -0.4536 12 1 8.3766 -1.9216 -0.1012 13 1 7.5268 -4.0387 0.7205 14 1 8.2450 -3.8342 -1.5867 15 6 4.2633 1.3332 -2.3201 16 8 4.1563 2.5389 -2.2458 17 6 4.7166 0.6947 -3.6077 18 7 4.9634 1.7357 -4.6085 19 7 4.0516 2.1826 -5.5747 20 1 3.1476 1.8507 -5.6915 21 6 4.6313 3.1417 -6.3153 22 6 5.9172 3.3430 -5.8447 23 6 7.0265 4.2304 -6.2147 24 8 6.9224 5.0262 -7.1350 25 7 8.1609 4.1336 -5.5004 26 6 8.2649 3.2759 -4.5106 27 7 7.2946 2.4593 -4.1429 28 6 6.1236 2.4489 -4.7601 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8508 0.5686 0.8426 35 1 3.9784 2.1766 0.0903 36 1 3.3859 -1.3630 -0.6715 37 1 3.9139 -1.2120 -2.3646 38 1 5.2390 -4.4812 -1.3059 39 1 3.9427 0.0181 -3.9699 40 1 5.6353 0.1351 -3.4319 41 1 4.1701 3.6702 -7.1366 42 1 9.1973 3.2360 -3.9673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748320940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:54 Heat of formation + Delta-G solvation = 28.827550 kcal Electronic energy + Delta-G solvation = -29261.704158 eV Core-core repulsion = 25052.960136 eV Total energy + Delta-G solvation = -4208.744021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.26676 -39.63318 -38.95275 -37.64305 -36.75866 -35.28231 -33.90121 -32.80546 -32.24023 -30.46525 -30.34746 -27.91408 -27.23012 -26.01974 -24.97678 -23.28412 -23.11810 -22.88917 -21.00991 -19.69289 -18.71928 -18.18193 -17.27014 -16.77550 -16.48691 -16.33402 -16.21395 -15.87437 -15.58352 -15.28246 -15.08908 -14.77602 -14.53079 -14.33937 -14.12709 -13.98891 -13.60146 -13.18429 -12.71584 -12.45532 -12.34806 -12.21878 -11.86000 -11.74288 -11.67412 -11.08895 -11.06047 -11.02970 -10.77564 -10.52280 -10.27455 -9.89390 -9.81959 -9.60903 -9.55748 -9.27667 -8.69413 -8.44466 -8.05618 -7.82497 -6.32451 -4.41210 0.28104 0.70703 1.77358 2.60371 2.82606 2.98618 3.16496 3.26425 3.31896 3.50074 3.92118 4.08220 4.19798 4.24201 4.46796 4.51702 4.71922 4.79289 4.91972 5.00734 5.03008 5.17090 5.20407 5.26880 5.40210 5.41011 5.44473 5.48274 5.66016 5.81904 5.95257 6.14257 6.16191 6.47486 6.62885 6.74769 6.94227 7.23708 7.28691 7.60489 7.62957 7.86176 7.97392 8.39441 8.43480 8.70793 8.88845 9.28817 10.73952 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.004170 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.085119 B = 6712.542857 C = 8650.127678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.049 3.951 4 C 0.122 3.878 5 N -0.576 5.576 6 C 0.235 3.765 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.069 3.931 10 N -0.889 5.889 11 Si 0.896 3.104 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.497 3.503 16 O -0.562 6.562 17 C 0.117 3.883 18 N -0.345 5.345 19 N -0.423 5.423 20 H 0.459 0.541 21 C 0.249 3.751 22 C -0.385 4.385 23 C 0.565 3.435 24 O -0.533 6.533 25 N -0.650 5.650 26 C 0.430 3.570 27 N -0.626 5.626 28 C 0.478 3.522 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.124 0.876 40 H 0.159 0.841 41 H 0.220 0.780 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 4.624 -3.694 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.029 4.029 4 C -0.001 4.001 5 N -0.305 5.305 6 C 0.116 3.884 7 C -0.586 4.586 8 H 0.084 0.916 9 C -0.135 4.135 10 N -0.526 5.526 11 Si 0.723 3.277 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.207 1.207 15 C 0.282 3.718 16 O -0.442 6.442 17 C -0.006 4.006 18 N -0.139 5.139 19 N -0.130 5.130 20 H 0.307 0.693 21 C 0.096 3.904 22 C -0.405 4.405 23 C 0.351 3.649 24 O -0.412 6.412 25 N -0.395 5.395 26 C 0.138 3.862 27 N -0.365 5.365 28 C 0.224 3.776 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.177 0.823 41 H 0.236 0.764 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.543 5.008 -3.639 11.375 hybrid contribution -0.745 -0.697 0.116 1.027 sum -10.288 4.311 -3.523 11.698 Atomic orbital electron populations 1.22692 0.81999 1.02518 0.99214 1.88060 1.18786 1.27329 1.95221 1.23000 0.95076 0.84977 0.99854 1.21408 0.91069 0.99894 0.87765 1.48147 1.62482 1.10094 1.09808 1.19612 0.98174 0.72202 0.98442 1.21554 0.97011 0.92704 1.47295 0.91638 1.24923 0.97748 0.96257 0.94546 1.69927 1.34461 1.01321 1.46937 0.86457 0.83957 0.78891 0.78394 1.19297 1.20845 1.20739 1.20412 0.78343 0.87171 0.85897 1.90688 1.55203 1.14118 1.84231 1.22206 1.07990 0.85868 0.84517 1.46394 1.05874 1.35481 1.26171 1.44049 1.12274 1.33387 1.23305 0.69262 1.23117 0.92101 0.83831 0.91311 1.22446 0.99622 1.11554 1.06886 1.18224 0.82060 0.81075 0.83545 1.90746 1.83050 1.37899 1.29509 1.69715 1.26507 1.28848 1.14427 1.24579 0.94104 0.80928 0.86550 1.67351 0.99668 1.33355 1.36117 1.18476 0.86471 0.84665 0.87961 0.89726 0.94543 0.94780 0.92902 0.93654 0.88886 0.89204 0.92566 0.95274 0.92459 0.85853 0.82344 0.76401 0.79138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.73 9.53 -35.23 -0.34 -6.07 16 3 C 0.05 0.68 6.28 37.16 0.23 0.91 16 4 C 0.12 1.97 5.81 -4.04 -0.02 1.94 16 5 N -0.58 -10.29 2.42 -175.06 -0.42 -10.72 16 6 C 0.24 4.84 4.78 -5.19 -0.02 4.81 16 7 C -0.55 -12.86 9.28 -34.44 -0.32 -13.18 16 8 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -22.64 13.29 55.43 0.74 -21.90 16 11 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.50 8.55 7.74 -10.98 -0.09 8.46 16 16 O -0.56 -10.88 16.01 5.56 0.09 -10.79 16 17 C 0.12 1.66 5.49 -5.19 -0.03 1.63 16 18 N -0.34 -4.59 3.16 -61.30 -0.19 -4.79 16 19 N -0.42 -3.48 7.14 30.93 0.22 -3.26 16 20 H 0.46 1.66 8.96 -182.55 -1.64 0.02 16 21 C 0.25 2.28 12.05 -16.40 -0.20 2.08 16 22 C -0.39 -5.92 6.37 -104.91 -0.67 -6.59 16 23 C 0.56 10.92 8.00 -12.96 -0.10 10.82 16 24 O -0.53 -11.46 18.03 4.82 0.09 -11.38 16 25 N -0.65 -12.47 10.50 -15.03 -0.16 -12.63 16 26 C 0.43 7.19 12.18 -92.30 -1.12 6.07 16 27 N -0.63 -11.17 10.39 -13.70 -0.14 -11.31 16 28 C 0.48 7.85 8.09 -155.80 -1.26 6.59 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 35 H 0.09 1.43 7.42 -51.93 -0.39 1.04 16 36 H 0.06 1.29 7.11 -51.93 -0.37 0.92 16 37 H 0.03 0.59 6.44 -51.93 -0.33 0.26 16 38 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 39 H 0.12 1.37 7.40 -51.93 -0.38 0.98 16 40 H 0.16 2.55 8.00 -51.93 -0.42 2.14 16 41 H 0.22 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -37.52 370.23 -8.60 -46.12 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.45 Total: 0.06 kcal Atomic # 6 Polarization: 29.20 SS G_CDS: -2.59 Total: 26.62 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: 0.04 Total: -64.60 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.16 Total: -28.24 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.52 -8.60 -46.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748320940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.949 kcal (2) G-P(sol) polarization free energy of solvation -37.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds