Wall clock time and date at job start Tue Mar 31 2020 18:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99543 * 2 1 4 4 C 1.53001 * 109.46810 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47091 * 65.00278 * 4 3 2 6 6 C 1.46497 * 120.00034 * 270.00216 * 5 4 3 7 7 C 1.50700 * 109.46701 * 269.99630 * 6 5 4 8 8 H 1.08000 * 120.00342 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99613 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00157 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99714 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47225 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47006 * 120.00172 * 11 9 7 14 14 H 1.48499 * 109.47125 * 240.00035 * 11 9 7 15 15 C 1.34783 * 119.99786 * 89.99571 * 5 4 3 16 16 O 1.21276 * 119.99886 * 0.02562 * 15 5 4 17 17 C 1.50700 * 119.99570 * 180.02562 * 15 5 4 18 18 N 1.46504 * 109.46774 * 180.02562 * 17 15 5 19 19 N 1.40157 * 126.01005 * 265.31743 * 18 17 15 20 20 H 0.97006 * 125.46105 * 359.96684 * 19 18 17 21 21 C 1.34332 * 109.08786 * 180.12460 * 19 18 17 22 22 C 1.38400 * 108.49667 * 359.60554 * 21 19 18 23 23 C 1.46806 * 134.77252 * 180.24810 * 22 21 19 24 24 O 1.22109 * 121.29868 * 0.02562 * 23 22 21 25 25 N 1.34404 * 117.40641 * 179.97438 * 23 22 21 26 26 C 1.31380 * 120.94628 * 359.97438 * 25 23 22 27 27 N 1.32040 * 123.73567 * 0.02562 * 26 25 23 28 28 C 1.32380 * 121.67534 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46547 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47203 * 299.99817 * 1 2 3 31 31 H 1.09002 * 109.46985 * 59.99777 * 1 2 3 32 32 H 1.08998 * 109.46919 * 60.00761 * 3 2 1 33 33 H 1.09000 * 109.47085 * 300.00044 * 3 2 1 34 34 H 1.08999 * 109.47615 * 305.00589 * 4 3 2 35 35 H 1.08998 * 109.46976 * 185.00357 * 4 3 2 36 36 H 1.08997 * 109.47023 * 29.99446 * 6 5 4 37 37 H 1.09004 * 109.47296 * 149.99812 * 6 5 4 38 38 H 0.97002 * 119.99910 * 180.02562 * 10 9 7 39 39 H 1.08995 * 109.47358 * 60.00066 * 17 15 5 40 40 H 1.08997 * 109.46691 * 300.00037 * 17 15 5 41 41 H 1.08002 * 125.75582 * 179.87710 * 21 19 18 42 42 H 1.07989 * 118.13310 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3404 7 6 5.5018 -1.2979 -0.9414 8 1 6.2201 -0.5459 -0.6499 9 6 5.8611 -2.6290 -0.9475 10 7 4.9862 -3.5447 -1.3020 11 14 7.5911 -3.1316 -0.4536 12 1 8.3766 -1.9216 -0.1012 13 1 7.5268 -4.0387 0.7205 14 1 8.2450 -3.8342 -1.5867 15 6 4.2633 1.3332 -2.3201 16 8 4.1563 2.5389 -2.2458 17 6 4.7166 0.6947 -3.6077 18 7 4.9634 1.7357 -4.6085 19 7 4.0516 2.1826 -5.5747 20 1 3.1476 1.8507 -5.6915 21 6 4.6313 3.1417 -6.3153 22 6 5.9172 3.3430 -5.8447 23 6 7.0265 4.2304 -6.2147 24 8 6.9224 5.0262 -7.1350 25 7 8.1609 4.1336 -5.5004 26 6 8.2649 3.2759 -4.5106 27 7 7.2946 2.4593 -4.1429 28 6 6.1236 2.4489 -4.7601 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8508 0.5686 0.8426 35 1 3.9784 2.1766 0.0903 36 1 3.3859 -1.3630 -0.6715 37 1 3.9139 -1.2120 -2.3646 38 1 5.2390 -4.4812 -1.3059 39 1 3.9427 0.0181 -3.9699 40 1 5.6353 0.1351 -3.4319 41 1 4.1701 3.6702 -7.1366 42 1 9.1973 3.2360 -3.9673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748320940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:53 Heat of formation + Delta-G solvation = 0.299431 kcal Electronic energy + Delta-G solvation = -29262.941230 eV Core-core repulsion = 25052.960136 eV Total energy + Delta-G solvation = -4209.981093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.33961 -41.00387 -40.18968 -38.75365 -38.08582 -36.76609 -35.03520 -34.56902 -33.46286 -31.65623 -31.59035 -29.28631 -28.61378 -27.04906 -26.12608 -24.89395 -24.42030 -24.03352 -22.16190 -20.84457 -19.94036 -19.36208 -18.73385 -18.38421 -17.75766 -17.52764 -17.27382 -17.04511 -16.82440 -16.62100 -16.29676 -16.19941 -15.75392 -15.55614 -15.32383 -15.16247 -14.85221 -14.48520 -14.29948 -13.71680 -13.64749 -13.60893 -13.32794 -13.02986 -12.81618 -12.75096 -12.63276 -12.37545 -12.16598 -11.95964 -11.68202 -11.64867 -11.11235 -10.87317 -10.64500 -10.61577 -10.41964 -9.75824 -9.56996 -9.11558 -8.19908 -6.32543 -0.73039 -0.26987 0.66375 1.30135 1.41721 1.44959 1.49505 1.57982 1.99991 2.21786 2.43746 2.90174 3.04866 3.08847 3.13373 3.21272 3.40847 3.64669 3.65720 3.95792 3.97917 4.09560 4.10580 4.17650 4.24674 4.36594 4.51551 4.53884 4.58571 4.83362 4.85267 4.86337 4.94858 5.08573 5.28693 5.55624 5.60922 5.78854 5.90692 6.06304 6.24749 6.34486 6.48876 6.79337 7.06405 7.09068 7.40376 7.62268 8.85170 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.004170 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.085119 B = 6712.542857 C = 8650.127678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.059 3.941 4 C 0.116 3.884 5 N -0.579 5.579 6 C 0.254 3.746 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.033 3.967 10 N -0.913 5.913 11 Si 0.943 3.057 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.279 1.279 15 C 0.496 3.504 16 O -0.583 6.583 17 C 0.124 3.876 18 N -0.352 5.352 19 N -0.382 5.382 20 H 0.484 0.516 21 C 0.303 3.697 22 C -0.423 4.423 23 C 0.548 3.452 24 O -0.580 6.580 25 N -0.685 5.685 26 C 0.426 3.574 27 N -0.651 5.651 28 C 0.453 3.547 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.267 0.733 39 H 0.161 0.839 40 H 0.139 0.861 41 H 0.279 0.721 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.362 4.270 -4.401 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C -0.019 4.019 4 C -0.007 4.007 5 N -0.308 5.308 6 C 0.134 3.866 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.168 4.168 10 N -0.552 5.552 11 Si 0.770 3.230 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.205 1.205 15 C 0.283 3.717 16 O -0.465 6.465 17 C 0.001 3.999 18 N -0.145 5.145 19 N -0.090 5.090 20 H 0.339 0.661 21 C 0.146 3.854 22 C -0.441 4.441 23 C 0.337 3.663 24 O -0.463 6.463 25 N -0.432 5.432 26 C 0.135 3.865 27 N -0.390 5.390 28 C 0.201 3.799 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.178 0.822 40 H 0.157 0.843 41 H 0.295 0.705 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.036 4.584 -4.292 13.576 hybrid contribution -0.136 -0.623 0.388 0.746 sum -12.172 3.961 -3.904 13.383 Atomic orbital electron populations 1.22875 0.79921 1.03402 1.00639 1.88010 1.21143 1.28000 1.95487 1.22871 0.93144 0.84877 1.00986 1.21507 0.93090 0.99290 0.86797 1.48098 1.62816 1.09151 1.10769 1.19195 0.95805 0.73572 0.98030 1.21725 0.98089 0.92361 1.46552 0.93098 1.25437 1.00094 0.96481 0.94824 1.69978 1.35584 1.01513 1.48091 0.85723 0.81054 0.78186 0.78039 1.19842 1.20817 1.20453 1.20819 0.77544 0.86843 0.86513 1.90676 1.56098 1.14989 1.84736 1.22069 1.07993 0.86061 0.83744 1.46320 1.06161 1.35189 1.26850 1.44303 1.12388 1.31697 1.20615 0.66057 1.23972 0.89516 0.81529 0.90363 1.22140 1.01517 1.12120 1.08348 1.18509 0.83232 0.81353 0.83163 1.90694 1.83995 1.40159 1.31432 1.69625 1.27781 1.30222 1.15593 1.25038 0.94949 0.80287 0.86182 1.67328 1.00775 1.33887 1.37032 1.18677 0.86934 0.85651 0.88667 0.89214 0.92844 0.93558 0.90465 0.93636 0.90018 0.89341 0.94712 0.94484 0.92375 0.82194 0.84319 0.70532 0.76555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.80 16 2 O -0.41 -11.84 9.53 -148.98 -1.42 -13.26 16 3 C 0.06 1.54 6.28 71.98 0.45 1.99 16 4 C 0.12 3.69 5.81 86.38 0.50 4.19 16 5 N -0.58 -20.28 2.42 -826.14 -2.00 -22.27 16 6 C 0.25 10.33 4.78 85.63 0.41 10.74 16 7 C -0.55 -25.75 9.28 25.60 0.24 -25.52 16 8 H 0.05 2.51 7.81 -2.91 -0.02 2.48 16 9 C 0.03 1.60 5.46 84.66 0.46 2.06 16 10 N -0.91 -46.03 13.29 21.45 0.28 -45.75 16 11 Si 0.94 39.87 29.54 68.60 2.03 41.89 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.50 16.41 7.74 87.66 0.68 17.09 16 16 O -0.58 -21.80 16.01 -3.02 -0.05 -21.85 16 17 C 0.12 3.28 5.49 85.63 0.47 3.75 16 18 N -0.35 -8.51 3.16 -347.86 -1.10 -9.61 16 19 N -0.38 -4.51 7.14 -56.05 -0.40 -4.91 16 20 H 0.48 0.62 8.96 -213.28 -1.91 -1.29 16 21 C 0.30 4.22 12.05 84.35 1.02 5.23 16 22 C -0.42 -12.39 6.37 -20.05 -0.13 -12.52 16 23 C 0.55 21.59 8.00 86.54 0.69 22.28 16 24 O -0.58 -25.47 18.03 -5.67 -0.10 -25.57 16 25 N -0.68 -27.26 10.50 -319.72 -3.36 -30.62 16 26 C 0.43 14.71 12.18 180.93 2.20 16.92 16 27 N -0.65 -23.56 10.39 -197.27 -2.05 -25.61 16 28 C 0.45 14.47 8.09 134.47 1.09 15.56 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 35 H 0.09 2.80 7.42 -2.39 -0.02 2.78 16 36 H 0.03 1.59 7.11 -2.39 -0.02 1.57 16 37 H 0.04 1.45 6.44 -2.38 -0.02 1.44 16 38 H 0.27 12.91 8.31 -92.71 -0.77 12.13 16 39 H 0.16 2.99 7.40 -2.39 -0.02 2.98 16 40 H 0.14 4.37 8.00 -2.39 -0.02 4.35 16 41 H 0.28 0.53 8.06 -2.91 -0.02 0.50 16 42 H 0.22 5.75 8.06 -2.92 -0.02 5.72 16 Total: -1.00 -85.89 370.23 0.33 -85.56 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -0.83 Total: 8.42 kcal Atomic # 6 Polarization: 54.25 SS G_CDS: 9.33 Total: 63.58 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -8.62 Total: -138.77 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -1.57 Total: -60.68 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Total: -85.89 0.33 -85.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748320940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.858 kcal (2) G-P(sol) polarization free energy of solvation -85.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds