Wall clock time and date at job start Tue Mar 31 2020 18:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39890 * 125.73138 * 2 1 4 4 C 1.30263 * 109.25886 * 180.02562 * 3 2 1 5 5 C 1.41547 * 108.18412 * 359.97438 * 4 3 2 6 6 C 1.46595 * 126.53818 * 179.97438 * 5 4 3 7 7 O 1.21605 * 120.00613 * 180.02562 * 6 5 4 8 8 O 1.34859 * 119.99446 * 0.02998 * 6 5 4 9 9 C 1.45194 * 116.99624 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46906 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00277 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00063 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99852 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46875 * 90.00250 * 13 12 10 15 15 H 1.07999 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99920 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99966 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47560 * 90.00197 * 18 16 14 20 20 H 1.48510 * 109.47021 * 210.00228 * 18 16 14 21 21 H 1.48502 * 109.47445 * 330.00111 * 18 16 14 22 22 C 1.46496 * 119.99887 * 0.02562 * 12 10 9 23 23 C 1.52993 * 109.47472 * 89.99861 * 22 12 10 24 24 C 1.47199 * 109.47363 * 179.97438 * 23 22 12 25 25 N 9.48767 * 119.54200 * 10.14748 * 4 1 2 26 26 C 1.34821 * 125.73964 * 180.02562 * 2 1 3 27 27 N 1.37952 * 126.45173 * 0.23864 * 26 2 1 28 28 H 1.08999 * 109.46525 * 269.96940 * 1 2 3 29 29 H 1.08997 * 109.47413 * 29.97409 * 1 2 3 30 30 H 1.08998 * 109.46464 * 149.97767 * 1 2 3 31 31 H 1.07995 * 125.91031 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47489 * 299.99738 * 9 8 6 33 33 H 1.08996 * 109.47675 * 59.99922 * 9 8 6 34 34 H 1.08994 * 109.47228 * 209.99950 * 13 12 10 35 35 H 1.09000 * 109.47416 * 330.00385 * 13 12 10 36 36 H 0.96999 * 120.00194 * 180.02562 * 17 16 14 37 37 H 1.09005 * 109.46733 * 209.99894 * 22 12 10 38 38 H 1.08995 * 109.47172 * 329.99599 * 22 12 10 39 39 H 1.09005 * 109.47169 * 299.99766 * 23 22 12 40 40 H 1.09000 * 109.47571 * 59.99551 * 23 22 12 41 41 H 0.97003 * 119.99777 * 179.69486 * 27 26 2 42 42 H 0.96996 * 120.00222 * 359.68538 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2820 1.1356 0.0000 4 6 3.5312 0.7662 -0.0005 5 6 3.5734 -0.6486 -0.0003 6 6 4.7768 -1.4858 -0.0013 7 8 4.6746 -2.6976 -0.0015 8 8 5.9973 -0.9121 -0.0019 9 6 7.1441 -1.8025 -0.0023 10 6 8.4122 -0.9882 -0.0037 11 8 8.3550 0.2232 -0.0038 12 7 9.6100 -1.6062 -0.0037 13 6 10.8427 -0.8146 -0.0055 14 6 11.2663 -0.5414 1.4147 15 1 10.6761 -0.9193 2.2364 16 6 12.4074 0.1909 1.6650 17 7 13.1258 0.6515 0.6643 18 14 12.9329 0.5289 3.4253 19 1 13.8283 -0.5597 3.8924 20 1 13.6558 1.8248 3.4859 21 1 11.7324 0.5907 4.2972 22 6 9.6791 -3.0696 -0.0030 23 6 9.7028 -3.5798 -1.4451 24 6 9.7729 -5.0501 -1.4444 25 7 9.8257 -6.1832 -1.4498 26 6 2.2526 -1.0943 -0.0005 27 7 1.8307 -2.4077 -0.0057 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3632 -0.8898 -0.5142 31 1 4.3866 1.4254 -0.0003 32 1 7.1165 -2.4310 0.8878 33 1 7.1157 -2.4313 -0.8921 34 1 11.6289 -1.3678 -0.5192 35 1 10.6672 0.1300 -0.5204 36 1 13.9288 1.1664 0.8403 37 1 10.5855 -3.3902 0.5108 38 1 8.8075 -3.4742 0.5113 39 1 8.7964 -3.2592 -1.9589 40 1 10.5744 -3.1751 -1.9596 41 1 2.4822 -3.1264 -0.0100 42 1 0.8826 -2.6126 -0.0049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749376289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:49 Heat of formation + Delta-G solvation = -8.753706 kcal Electronic energy + Delta-G solvation = -27957.879333 eV Core-core repulsion = 23747.505666 eV Total energy + Delta-G solvation = -4210.373667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61881 -40.05746 -38.95328 -36.89601 -36.21824 -35.27189 -35.12163 -33.44060 -32.90761 -30.87145 -29.76605 -28.75904 -27.49558 -26.52385 -24.05293 -23.40523 -22.50918 -21.37071 -20.38872 -18.81601 -18.28201 -17.67264 -17.50538 -16.78921 -16.55264 -16.40193 -16.25177 -16.03140 -15.86939 -15.28063 -14.72340 -14.60950 -14.44761 -14.14684 -13.69225 -13.61933 -13.32770 -13.18561 -13.02246 -12.73804 -12.60129 -12.44751 -12.16140 -12.04903 -11.74354 -11.60821 -11.29133 -11.15521 -11.00787 -10.93053 -10.63657 -10.52129 -10.36858 -10.18853 -9.71736 -9.34897 -9.06306 -8.47038 -8.24745 -7.90681 -6.08767 -4.13370 1.41611 1.83316 2.00941 2.64741 2.77258 2.84215 3.17155 3.24908 3.25505 3.29974 3.37388 3.41920 3.70088 4.11267 4.23392 4.42655 4.65042 4.69249 4.84948 4.88985 4.94286 5.01552 5.08330 5.15997 5.21805 5.26043 5.28473 5.47490 5.50379 5.80596 5.92633 6.05474 6.33742 6.47403 6.87542 6.90702 7.04514 7.31748 7.39225 7.51468 7.59139 7.86707 7.92820 8.14981 8.17828 8.78368 8.93817 9.52207 10.99430 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.002856 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.775914 B = 9801.310878 C =11761.919940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.402 5.402 3 N -0.306 5.306 4 C 0.141 3.859 5 C -0.355 4.355 6 C 0.554 3.446 7 O -0.546 6.546 8 O -0.323 6.323 9 C 0.050 3.950 10 C 0.509 3.491 11 O -0.508 6.508 12 N -0.593 5.593 13 C 0.246 3.754 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.113 3.887 23 C -0.052 4.052 24 C 0.218 3.782 25 N -0.444 5.444 26 C 0.441 3.559 27 N -0.828 5.828 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.202 0.798 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.264 0.736 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.432 0.568 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.500 -5.792 -3.781 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.189 5.189 3 N -0.124 5.124 4 C -0.050 4.050 5 C -0.372 4.372 6 C 0.402 3.598 7 O -0.439 6.439 8 O -0.238 6.238 9 C -0.028 4.028 10 C 0.294 3.706 11 O -0.382 6.382 12 N -0.327 5.327 13 C 0.128 3.872 14 C -0.569 4.569 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.013 4.013 23 C -0.093 4.093 24 C -0.101 4.101 25 N -0.121 5.121 26 C 0.205 3.795 27 N -0.379 5.379 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.219 0.781 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.268 0.732 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -24.183 -5.990 -3.831 25.207 hybrid contribution 0.754 -0.685 0.979 1.413 sum -23.429 -6.676 -2.852 24.528 Atomic orbital electron populations 1.21833 0.73944 1.04624 1.03539 1.48222 1.06574 1.02313 1.61821 1.77233 1.01876 1.04807 1.28499 1.24108 0.95171 0.93365 0.92340 1.18278 0.88320 0.93736 1.36869 1.19669 0.82733 0.85697 0.71720 1.90731 1.87500 1.15312 1.50318 1.86619 1.13580 1.39442 1.84116 1.22909 0.83595 0.92118 1.04166 1.19775 0.83951 0.88445 0.78444 1.90736 1.86318 1.13572 1.47590 1.48150 1.07276 1.05228 1.72007 1.19408 0.78395 0.91561 0.97845 1.21414 1.08848 1.34373 0.92240 0.92272 1.24908 0.96316 0.95301 0.97408 1.69914 1.16324 1.36248 1.30714 0.86507 0.78655 0.77683 0.84657 1.20684 1.21102 1.19819 1.21384 1.04692 0.81954 0.93287 1.19904 1.06404 0.81576 1.01446 1.28985 0.92847 0.95044 0.93178 1.81136 1.09309 1.13153 1.08541 1.17913 0.89294 0.82072 0.90210 1.41803 1.11442 1.02646 1.81983 0.90568 0.88480 0.90094 0.78091 0.88648 0.88879 0.94379 0.93316 0.92634 0.88292 0.90605 0.87589 0.86254 0.73204 0.76973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.44 11.25 59.85 0.67 1.12 16 2 N -0.40 -3.76 3.99 -66.81 -0.27 -4.03 16 3 N -0.31 -3.68 12.47 30.89 0.38 -3.29 16 4 C 0.14 1.74 11.86 -16.96 -0.20 1.54 16 5 C -0.35 -4.55 6.15 -104.83 -0.64 -5.19 16 6 C 0.55 7.97 7.93 34.10 0.27 8.24 16 7 O -0.55 -7.95 14.94 -19.35 -0.29 -8.24 16 8 O -0.32 -5.13 9.60 -47.61 -0.46 -5.59 16 9 C 0.05 0.73 4.51 36.01 0.16 0.89 16 10 C 0.51 9.54 7.75 -10.98 -0.09 9.45 16 11 O -0.51 -11.95 16.08 -14.10 -0.23 -12.17 16 12 N -0.59 -10.71 2.46 -175.07 -0.43 -11.14 16 13 C 0.25 5.72 5.16 -5.19 -0.03 5.69 16 14 C -0.53 -13.99 9.39 -34.44 -0.32 -14.31 16 15 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 22 C 0.11 1.48 5.17 -4.05 -0.02 1.46 16 23 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 24 C 0.22 2.66 15.43 -20.81 -0.32 2.33 16 25 N -0.44 -6.61 18.53 42.09 0.78 -5.83 16 26 C 0.44 4.47 7.98 -153.82 -1.23 3.25 16 27 N -0.83 -5.70 9.02 31.40 0.28 -5.41 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.13 7.45 -51.93 -0.39 -0.25 16 31 H 0.20 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.10 1.26 7.40 -51.93 -0.38 0.88 16 33 H 0.09 1.10 7.18 -51.93 -0.37 0.73 16 34 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 39 H 0.11 0.91 7.22 -51.93 -0.38 0.53 16 40 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.43 3.40 7.02 -40.82 -0.29 3.12 16 42 H 0.40 1.31 8.04 -40.82 -0.33 0.98 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -36.63 378.20 -5.75 -42.39 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.93 Total: 0.66 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: -2.02 Total: 15.38 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 1.49 Total: -54.24 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.97 Total: -26.01 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.63 -5.75 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749376289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.632 kcal (2) G-P(sol) polarization free energy of solvation -36.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds