Wall clock time and date at job start Tue Mar 31 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39890 * 125.73138 * 2 1 4 4 C 1.30263 * 109.25886 * 180.02562 * 3 2 1 5 5 C 1.41547 * 108.18412 * 359.97438 * 4 3 2 6 6 C 1.46595 * 126.53818 * 179.97438 * 5 4 3 7 7 O 1.21605 * 120.00613 * 180.02562 * 6 5 4 8 8 O 1.34859 * 119.99446 * 0.02998 * 6 5 4 9 9 C 1.45194 * 116.99624 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46906 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00277 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00063 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99852 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46875 * 90.00250 * 13 12 10 15 15 H 1.07999 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99920 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99966 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47560 * 90.00197 * 18 16 14 20 20 H 1.48510 * 109.47021 * 210.00228 * 18 16 14 21 21 H 1.48502 * 109.47445 * 330.00111 * 18 16 14 22 22 C 1.46496 * 119.99887 * 0.02562 * 12 10 9 23 23 C 1.52993 * 109.47472 * 89.99861 * 22 12 10 24 24 C 1.47199 * 109.47363 * 179.97438 * 23 22 12 25 25 N 9.48767 * 119.54200 * 10.14748 * 4 1 2 26 26 C 1.34821 * 125.73964 * 180.02562 * 2 1 3 27 27 N 1.37952 * 126.45173 * 0.23864 * 26 2 1 28 28 H 1.08999 * 109.46525 * 269.96940 * 1 2 3 29 29 H 1.08997 * 109.47413 * 29.97409 * 1 2 3 30 30 H 1.08998 * 109.46464 * 149.97767 * 1 2 3 31 31 H 1.07995 * 125.91031 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47489 * 299.99738 * 9 8 6 33 33 H 1.08996 * 109.47675 * 59.99922 * 9 8 6 34 34 H 1.08994 * 109.47228 * 209.99950 * 13 12 10 35 35 H 1.09000 * 109.47416 * 330.00385 * 13 12 10 36 36 H 0.96999 * 120.00194 * 180.02562 * 17 16 14 37 37 H 1.09005 * 109.46733 * 209.99894 * 22 12 10 38 38 H 1.08995 * 109.47172 * 329.99599 * 22 12 10 39 39 H 1.09005 * 109.47169 * 299.99766 * 23 22 12 40 40 H 1.09000 * 109.47571 * 59.99551 * 23 22 12 41 41 H 0.97003 * 119.99777 * 179.69486 * 27 26 2 42 42 H 0.96996 * 120.00222 * 359.68538 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2820 1.1356 0.0000 4 6 3.5312 0.7662 -0.0005 5 6 3.5734 -0.6486 -0.0003 6 6 4.7768 -1.4858 -0.0013 7 8 4.6746 -2.6976 -0.0015 8 8 5.9973 -0.9121 -0.0019 9 6 7.1441 -1.8025 -0.0023 10 6 8.4122 -0.9882 -0.0037 11 8 8.3550 0.2232 -0.0038 12 7 9.6100 -1.6062 -0.0037 13 6 10.8427 -0.8146 -0.0055 14 6 11.2663 -0.5414 1.4147 15 1 10.6761 -0.9193 2.2364 16 6 12.4074 0.1909 1.6650 17 7 13.1258 0.6515 0.6643 18 14 12.9329 0.5289 3.4253 19 1 13.8283 -0.5597 3.8924 20 1 13.6558 1.8248 3.4859 21 1 11.7324 0.5907 4.2972 22 6 9.6791 -3.0696 -0.0030 23 6 9.7028 -3.5798 -1.4451 24 6 9.7729 -5.0501 -1.4444 25 7 9.8257 -6.1832 -1.4498 26 6 2.2526 -1.0943 -0.0005 27 7 1.8307 -2.4077 -0.0057 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3632 -0.8898 -0.5142 31 1 4.3866 1.4254 -0.0003 32 1 7.1165 -2.4310 0.8878 33 1 7.1157 -2.4313 -0.8921 34 1 11.6289 -1.3678 -0.5192 35 1 10.6672 0.1300 -0.5204 36 1 13.9288 1.1664 0.8403 37 1 10.5855 -3.3902 0.5108 38 1 8.8075 -3.4742 0.5113 39 1 8.7964 -3.2592 -1.9589 40 1 10.5744 -3.1751 -1.9596 41 1 2.4822 -3.1264 -0.0100 42 1 0.8826 -2.6126 -0.0049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749376289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:48 Heat of formation + Delta-G solvation = -33.389246 kcal Electronic energy + Delta-G solvation = -27958.947610 eV Core-core repulsion = 23747.505666 eV Total energy + Delta-G solvation = -4211.441944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.43191 -41.25578 -40.29150 -38.03031 -37.31981 -36.65952 -35.90133 -34.84958 -34.08547 -32.18859 -30.94782 -29.85125 -28.48581 -27.76354 -25.32789 -24.77068 -23.81281 -22.21125 -21.25175 -20.21012 -19.18594 -18.81888 -18.41355 -18.32158 -17.81527 -17.55194 -17.36018 -17.12226 -16.66959 -16.63843 -16.07885 -15.76162 -15.64550 -15.33519 -14.80621 -14.49733 -14.37735 -14.35206 -13.85589 -13.78503 -13.57139 -13.53722 -13.51086 -13.42824 -13.13047 -12.93014 -12.71050 -12.48575 -12.32860 -12.16207 -12.07055 -11.97120 -11.67078 -11.60328 -11.37103 -10.62066 -10.55033 -10.07253 -9.52288 -9.03826 -8.15347 -6.26834 0.55945 1.10450 1.12276 1.42432 1.45140 1.52627 1.56873 1.65573 1.86538 1.86959 2.24598 2.40431 2.51902 2.68414 3.10549 3.17587 3.55343 3.63783 3.90612 3.94133 4.07577 4.10754 4.17384 4.22606 4.40514 4.48394 4.54159 4.58383 4.69113 4.83972 5.06074 5.10443 5.28097 5.36400 5.45826 5.53622 5.61357 5.87747 6.15062 6.18579 6.43106 6.60377 6.65236 6.80486 6.82490 6.89349 7.31708 7.46827 8.91614 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.002856 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.775914 B = 9801.310878 C =11761.919940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.397 5.397 3 N -0.325 5.325 4 C 0.130 3.870 5 C -0.386 4.386 6 C 0.552 3.448 7 O -0.552 6.552 8 O -0.344 6.344 9 C 0.058 3.942 10 C 0.506 3.494 11 O -0.567 6.567 12 N -0.591 5.591 13 C 0.260 3.740 14 C -0.541 4.541 15 H 0.054 0.946 16 C 0.012 3.988 17 N -0.925 5.925 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.108 3.892 23 C -0.040 4.040 24 C 0.246 3.754 25 N -0.488 5.488 26 C 0.449 3.551 27 N -0.809 5.809 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.200 0.800 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.042 0.958 35 H 0.008 0.992 36 H 0.265 0.735 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.430 0.570 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.628 -7.548 -3.434 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.186 5.186 3 N -0.143 5.143 4 C -0.061 4.061 5 C -0.403 4.403 6 C 0.402 3.598 7 O -0.445 6.445 8 O -0.260 6.260 9 C -0.019 4.019 10 C 0.293 3.707 11 O -0.445 6.445 12 N -0.323 5.323 13 C 0.139 3.861 14 C -0.579 4.579 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.565 5.565 18 Si 0.782 3.218 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.016 4.016 23 C -0.081 4.081 24 C -0.071 4.071 25 N -0.166 5.166 26 C 0.210 3.790 27 N -0.360 5.360 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.216 0.784 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.266 0.734 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -26.362 -7.817 -3.484 27.716 hybrid contribution 1.292 -0.146 0.857 1.558 sum -25.069 -7.963 -2.627 26.434 Atomic orbital electron populations 1.22296 0.71061 1.06538 1.05142 1.48523 1.07948 1.01245 1.60867 1.77142 1.01986 1.06455 1.28685 1.24140 0.95509 0.93593 0.92831 1.18408 0.88954 0.93870 1.39090 1.19858 0.82469 0.85880 0.71599 1.90708 1.87461 1.15294 1.51058 1.86615 1.14376 1.40411 1.84567 1.22873 0.81233 0.91135 1.06652 1.20503 0.85223 0.88079 0.76871 1.90708 1.87246 1.16326 1.50256 1.47983 1.05728 1.07074 1.71470 1.18895 0.80527 0.90777 0.95856 1.21751 1.08650 1.34007 0.93528 0.92763 1.25692 0.96631 0.95310 1.01056 1.70014 1.16820 1.37101 1.32533 0.85573 0.78221 0.77750 0.80216 1.19267 1.21075 1.19941 1.21623 1.05848 0.78712 0.95441 1.19854 1.08219 0.80253 0.99801 1.29042 0.91359 0.94901 0.91811 1.81179 1.11004 1.14533 1.09921 1.17896 0.88645 0.83282 0.89189 1.41776 1.12663 1.01165 1.80394 0.89088 0.87989 0.86886 0.78358 0.86712 0.85458 0.93984 0.97390 0.92565 0.88905 0.87780 0.84812 0.85579 0.73392 0.74698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 11.25 127.77 1.44 1.96 16 2 N -0.40 -6.74 3.99 -365.28 -1.46 -8.20 16 3 N -0.32 -7.66 12.47 -56.20 -0.70 -8.36 16 4 C 0.13 3.27 11.86 85.74 1.02 4.29 16 5 C -0.39 -9.67 6.15 -20.00 -0.12 -9.79 16 6 C 0.55 15.38 7.93 70.00 0.56 15.93 16 7 O -0.55 -14.98 14.94 19.49 0.29 -14.69 16 8 O -0.34 -10.81 9.60 -51.33 -0.49 -11.30 16 9 C 0.06 1.59 4.51 71.24 0.32 1.91 16 10 C 0.51 18.90 7.75 87.66 0.68 19.58 16 11 O -0.57 -27.66 16.08 15.78 0.25 -27.40 16 12 N -0.59 -21.06 2.46 -826.17 -2.03 -23.09 16 13 C 0.26 12.35 5.16 85.63 0.44 12.79 16 14 C -0.54 -28.93 9.39 25.60 0.24 -28.69 16 15 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 16 C 0.01 0.68 5.46 84.66 0.46 1.14 16 17 N -0.92 -53.24 13.29 21.45 0.28 -52.96 16 18 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.11 2.61 5.17 86.38 0.45 3.05 16 23 C -0.04 -0.73 6.03 28.79 0.17 -0.55 16 24 C 0.25 5.42 15.43 89.46 1.38 6.80 16 25 N -0.49 -13.72 18.53 19.99 0.37 -13.35 16 26 C 0.45 8.29 7.98 132.75 1.06 9.35 16 27 N -0.81 -8.89 9.02 -54.56 -0.49 -9.38 16 28 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 -0.07 7.45 -2.39 -0.02 -0.08 16 31 H 0.20 4.78 8.06 -2.91 -0.02 4.75 16 32 H 0.12 2.72 7.40 -2.39 -0.02 2.71 16 33 H 0.13 2.60 7.18 -2.39 -0.02 2.58 16 34 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 35 H 0.01 0.44 7.42 -2.39 -0.02 0.43 16 36 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.09 2.40 8.07 -2.38 -0.02 2.38 16 38 H 0.10 1.96 6.44 -2.39 -0.02 1.95 16 39 H 0.13 1.78 7.22 -2.38 -0.02 1.76 16 40 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.43 5.66 7.02 -92.71 -0.65 5.01 16 42 H 0.42 1.26 8.04 -92.71 -0.75 0.51 16 Total: -1.00 -82.36 378.20 5.85 -76.51 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -0.29 Total: 8.81 kcal Atomic # 6 Polarization: 29.69 SS G_CDS: 8.09 Total: 37.78 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -4.03 Total: -115.33 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: 0.05 Total: -53.39 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -82.36 5.85 -76.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749376289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.122 kcal (2) G-P(sol) polarization free energy of solvation -82.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds