Wall clock time and date at job start Tue Mar 31 2020 18:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47084 * 2 1 4 4 C 1.45642 * 117.70646 * 269.99644 * 3 2 1 5 5 C 1.52994 * 110.77469 * 158.09819 * 4 3 2 6 6 N 1.47272 * 108.18463 * 46.72535 * 5 4 3 7 7 C 1.34774 * 121.34861 * 118.51921 * 6 5 4 8 8 O 1.21368 * 120.00607 * 353.22154 * 7 6 5 9 9 C 1.49314 * 119.99871 * 173.22086 * 7 6 5 10 10 O 1.21404 * 119.99913 * 353.64385 * 9 7 6 11 11 N 1.34776 * 120.00149 * 173.64005 * 9 7 6 12 12 C 1.40286 * 120.00050 * 180.02562 * 11 9 7 13 13 C 1.40719 * 126.10271 * 359.69282 * 12 11 9 14 14 N 1.30872 * 108.38188 * 179.87754 * 13 12 11 15 15 N 1.40067 * 108.43549 * 0.37909 * 14 13 12 16 16 C 1.37287 * 126.06103 * 179.75309 * 15 14 13 17 17 H 1.07994 * 120.00613 * 180.02562 * 16 15 14 18 18 C 1.39009 * 119.99628 * 0.02562 * 16 15 14 19 19 N 1.31281 * 120.00080 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99921 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47316 * 89.99612 * 20 18 16 22 22 H 1.48505 * 109.47020 * 209.99954 * 20 18 16 23 23 H 1.48503 * 109.47282 * 329.99525 * 20 18 16 24 24 C 1.35790 * 126.09936 * 179.97438 * 12 11 9 25 25 C 1.47046 * 117.29641 * 298.49841 * 6 5 4 26 26 C 1.33383 * 117.70378 * 90.00221 * 3 2 1 27 27 O 1.21279 * 118.49002 * 4.59856 * 26 3 2 28 28 H 1.09004 * 109.46962 * 59.99658 * 1 2 3 29 29 H 1.08992 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47031 * 300.00418 * 1 2 3 31 31 H 1.08995 * 109.47316 * 240.00017 * 2 1 3 32 32 H 1.09001 * 109.47242 * 119.99896 * 2 1 3 33 33 H 1.09000 * 109.21852 * 37.76879 * 4 3 2 34 34 H 1.08998 * 109.18512 * 278.41224 * 4 3 2 35 35 H 1.08998 * 109.71667 * 287.05594 * 5 4 3 36 36 H 1.08994 * 109.71971 * 166.40085 * 5 4 3 37 37 H 0.96997 * 119.99580 * 0.02562 * 11 9 7 38 38 H 1.08011 * 125.81093 * 359.97438 * 13 12 11 39 39 H 0.97008 * 119.99573 * 179.97438 * 19 18 16 40 40 H 1.08000 * 126.25318 * 359.95071 * 24 12 11 41 41 H 1.09003 * 109.56632 * 282.91817 * 25 6 5 42 42 H 1.08999 * 109.56896 * 162.55884 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2442 2.0196 -1.2894 5 6 2.2168 3.5432 -1.1528 6 7 3.0464 3.9158 0.0056 7 6 4.1391 4.6920 -0.1351 8 8 4.5280 4.9974 -1.2434 9 6 4.8714 5.1762 1.0727 10 8 4.4195 4.9689 2.1803 11 7 6.0341 5.8435 0.9334 12 6 6.7223 6.2980 2.0682 13 6 6.3156 6.1346 3.4053 14 7 7.2135 6.6876 4.1803 15 7 8.2208 7.2315 3.3732 16 6 9.3362 7.9000 3.8133 17 1 10.0535 8.2810 3.1015 18 6 9.5424 8.0866 5.1753 19 7 8.6702 7.6240 6.0407 20 14 11.0604 8.9957 5.7742 21 1 10.7615 10.4469 5.8732 22 1 11.4520 8.4787 7.1101 23 1 12.1746 8.7840 4.8155 24 6 7.8972 6.9788 2.0719 25 6 2.6337 3.4068 1.3221 26 6 2.2251 1.9659 1.1809 27 8 2.0818 1.3040 2.1871 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.4653 1.7079 -1.9854 34 1 3.2154 1.7115 -1.6765 35 1 1.1923 3.8800 -0.9950 36 1 2.6200 4.0008 -2.0562 37 1 6.3949 6.0094 0.0484 38 1 5.4162 5.6362 3.7359 39 1 8.8144 7.7540 6.9911 40 1 8.4709 7.2674 1.2036 41 1 1.7907 3.9909 1.6913 42 1 3.4669 3.4832 2.0206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755515187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:39 Heat of formation + Delta-G solvation = 12.919506 kcal Electronic energy + Delta-G solvation = -28588.252110 eV Core-core repulsion = 24378.818264 eV Total energy + Delta-G solvation = -4209.433846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26298 -40.21389 -39.45159 -38.11082 -36.73207 -35.75251 -34.32359 -33.23144 -31.62134 -30.37478 -30.17585 -28.25161 -27.53508 -25.63512 -24.69735 -23.63088 -22.66065 -21.12986 -20.32956 -19.56828 -19.00259 -18.07883 -17.54232 -17.42756 -16.48560 -16.33438 -15.92731 -15.74126 -15.54573 -15.14285 -15.12040 -14.47079 -14.27365 -14.09844 -13.86870 -13.67660 -13.42241 -13.21400 -13.03336 -12.85529 -12.58920 -12.56500 -12.17121 -11.86920 -11.76005 -11.51878 -11.32738 -11.31910 -11.21739 -10.94342 -10.57540 -10.42294 -10.32452 -9.28284 -9.16278 -9.05225 -8.94984 -8.89439 -8.17126 -6.84047 -6.63482 -4.31283 1.45708 2.16208 2.40579 2.68231 2.90405 3.02009 3.07279 3.19250 3.48779 3.63701 3.79778 4.13767 4.30761 4.31567 4.45561 4.61882 4.73919 4.83111 4.89894 4.95218 4.96573 5.05744 5.16823 5.19699 5.36690 5.41679 5.51678 5.66436 5.83564 5.90386 6.12872 6.15938 6.30068 6.65244 6.76886 6.84660 6.91362 7.11793 7.12948 7.51255 7.76879 7.89294 7.98212 8.13020 8.38777 8.63708 9.27007 9.55636 10.32117 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.002329 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.996167 B =12021.278639 C =12785.927044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 N -0.607 5.607 4 C 0.101 3.899 5 C 0.095 3.905 6 N -0.595 5.595 7 C 0.524 3.476 8 O -0.521 6.521 9 C 0.482 3.518 10 O -0.516 6.516 11 N -0.576 5.576 12 C -0.073 4.073 13 C -0.023 4.023 14 N -0.260 5.260 15 N -0.137 5.137 16 C -0.321 4.321 17 H 0.119 0.881 18 C 0.046 3.954 19 N -0.766 5.766 20 Si 0.936 3.064 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.076 4.076 25 C 0.079 3.921 26 C 0.509 3.491 27 O -0.538 6.538 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.410 0.590 38 H 0.179 0.821 39 H 0.277 0.723 40 H 0.149 0.851 41 H 0.108 0.892 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 -9.529 -15.339 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.023 4.023 3 N -0.341 5.341 4 C -0.023 4.023 5 C -0.027 4.027 6 N -0.332 5.332 7 C 0.308 3.692 8 O -0.396 6.396 9 C 0.264 3.736 10 O -0.395 6.395 11 N -0.218 5.218 12 C -0.179 4.179 13 C -0.199 4.199 14 N -0.091 5.091 15 N 0.097 4.903 16 C -0.454 4.454 17 H 0.136 0.864 18 C -0.172 4.172 19 N -0.392 5.392 20 Si 0.760 3.240 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.228 4.228 25 C -0.045 4.045 26 C 0.297 3.703 27 O -0.414 6.414 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.245 0.755 38 H 0.196 0.804 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.125 0.875 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.244 -9.580 -13.159 20.368 hybrid contribution 0.446 0.308 -1.297 1.406 sum -11.798 -9.272 -14.456 20.836 Atomic orbital electron populations 1.22094 0.95663 1.02327 1.02258 1.21527 0.94553 0.82641 1.03602 1.47363 1.66023 1.14825 1.05907 1.21765 1.02606 0.92783 0.85105 1.22061 0.95858 0.93834 0.90991 1.47933 1.26338 1.49861 1.09045 1.20288 0.80516 0.78612 0.89782 1.90736 1.65552 1.56703 1.26655 1.19531 0.82879 0.82450 0.88788 1.90509 1.66486 1.56467 1.26009 1.42133 1.19714 1.50674 1.09240 1.17234 0.98194 1.16118 0.86387 1.24170 1.01407 1.05085 0.89260 1.78285 0.97842 1.17020 1.15925 1.44586 1.13901 1.29940 1.01897 1.19934 0.98160 1.34263 0.93009 0.86389 1.25679 0.99046 0.96713 0.95742 1.70205 1.31967 1.34204 1.02800 0.85797 0.80012 0.79372 0.78819 1.19506 1.20009 1.18725 1.21302 0.99847 1.12419 0.89250 1.22839 1.06363 0.89249 0.86089 1.20560 0.76717 0.90089 0.82971 1.90755 1.51951 1.63122 1.35577 0.92663 0.91498 0.92170 0.90588 0.89243 0.89218 0.91007 0.89734 0.86719 0.75517 0.80447 0.91275 0.83324 0.87453 0.81749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.23 37.16 0.38 -0.75 16 2 C 0.10 0.80 5.92 -4.04 -0.02 0.78 16 3 N -0.61 -5.77 2.81 -174.88 -0.49 -6.27 16 4 C 0.10 0.68 6.50 -4.51 -0.03 0.65 16 5 C 0.10 0.74 6.52 -3.62 -0.02 0.71 16 6 N -0.60 -6.88 2.98 -174.71 -0.52 -7.40 16 7 C 0.52 7.44 7.76 -11.65 -0.09 7.34 16 8 O -0.52 -7.79 16.00 5.48 0.09 -7.70 16 9 C 0.48 8.25 7.70 -11.65 -0.09 8.16 16 10 O -0.52 -9.75 10.43 5.45 0.06 -9.69 16 11 N -0.58 -10.34 5.45 -10.46 -0.06 -10.39 16 12 C -0.07 -1.64 6.90 -83.93 -0.58 -2.22 16 13 C -0.02 -0.59 10.84 -17.02 -0.18 -0.78 16 14 N -0.26 -7.34 10.39 30.81 0.32 -7.02 16 15 N -0.14 -3.66 3.73 -11.40 -0.04 -3.70 16 16 C -0.32 -8.28 10.25 -14.82 -0.15 -8.43 16 17 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 18 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 19 N -0.77 -20.92 11.81 55.50 0.66 -20.27 16 20 Si 0.94 18.50 29.55 -169.99 -5.02 13.48 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 24 C -0.08 -1.75 11.50 -16.37 -0.19 -1.94 16 25 C 0.08 0.98 5.85 -5.02 -0.03 0.95 16 26 C 0.51 6.49 7.57 -11.73 -0.09 6.40 16 27 O -0.54 -8.74 16.18 5.56 0.09 -8.65 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.44 8.01 -51.93 -0.42 0.02 16 32 H 0.09 0.91 7.09 -51.93 -0.37 0.54 16 33 H 0.09 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.86 7.09 -51.93 -0.37 0.49 16 37 H 0.41 6.27 8.31 -40.82 -0.34 5.93 16 38 H 0.18 4.32 5.92 -52.48 -0.31 4.01 16 39 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.15 2.84 8.06 -52.49 -0.42 2.41 16 41 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.17 2.50 4.92 -52.26 -0.26 2.25 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -33.66 356.13 -5.74 -39.40 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -4.98 Total: 10.90 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -1.20 Total: 11.94 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.14 Total: -55.05 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: 0.23 Total: -26.04 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.66 -5.74 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755515187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.318 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds