Wall clock time and date at job start Tue Mar 31 2020 18:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00564 * 2 1 4 4 C 1.52994 * 109.47448 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47148 * 179.97438 * 4 3 2 6 6 C 1.34950 * 126.03386 * 125.25933 * 5 4 3 7 7 C 1.35317 * 107.74253 * 180.14765 * 6 5 4 8 8 C 1.50703 * 126.04015 * 179.87836 * 7 6 5 9 9 N 1.46507 * 109.46492 * 269.71475 * 8 7 6 10 10 C 1.39930 * 119.99400 * 180.02562 * 9 8 7 11 11 C 1.38713 * 120.08087 * 359.97438 * 10 9 8 12 12 C 1.38220 * 120.01472 * 180.02562 * 11 10 9 13 13 C 1.38523 * 120.17655 * 359.97438 * 12 11 10 14 14 F 1.35100 * 119.92147 * 180.02562 * 13 12 11 15 15 C 1.38356 * 120.16160 * 0.04310 * 13 12 11 16 16 C 1.38728 * 119.97962 * 359.93798 * 15 13 12 17 17 O 1.35794 * 120.08527 * 180.31488 * 16 15 13 18 18 C 1.34801 * 117.00313 * 354.40800 * 17 16 15 19 19 H 1.07999 * 119.99778 * 5.07674 * 18 17 16 20 20 C 1.38630 * 119.99970 * 185.07462 * 18 17 16 21 21 N 1.31578 * 120.00229 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99858 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47295 * 89.99681 * 22 20 18 24 24 H 1.48504 * 109.46766 * 209.99812 * 22 20 18 25 25 H 1.48495 * 109.47126 * 329.99633 * 22 20 18 26 26 C 1.39871 * 107.92214 * 359.60953 * 7 6 5 27 27 N 1.30835 * 108.20123 * 0.24041 * 26 7 6 28 28 H 1.08989 * 109.47660 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47055 * 300.00385 * 1 2 3 30 30 H 1.09000 * 109.47125 * 59.99792 * 1 2 3 31 31 H 1.09001 * 109.47362 * 59.99357 * 3 2 1 32 32 H 1.09008 * 109.46922 * 299.99964 * 3 2 1 33 33 H 1.09003 * 109.47274 * 59.99848 * 4 3 2 34 34 H 1.08998 * 109.47012 * 299.99698 * 4 3 2 35 35 H 1.07999 * 126.13069 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.47218 * 149.71428 * 8 7 6 37 37 H 1.09000 * 109.47059 * 29.70946 * 8 7 6 38 38 H 0.96997 * 119.99932 * 359.97438 * 9 8 7 39 39 H 1.07995 * 119.99180 * 0.02562 * 11 10 9 40 40 H 1.07999 * 119.90929 * 180.02562 * 12 11 10 41 41 H 1.07997 * 120.01567 * 179.97438 * 15 13 12 42 42 H 0.96997 * 120.00612 * 180.02562 * 21 20 18 43 43 H 1.07998 * 125.90200 * 180.22182 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0303 2.9921 0.8893 7 6 5.3263 4.2665 0.5440 8 6 6.2852 5.1800 1.2631 9 7 5.5626 5.9367 2.2886 10 6 6.2466 6.8563 3.0914 11 6 7.6088 7.0524 2.9180 12 6 8.2832 7.9608 3.7121 13 6 7.6023 8.6778 4.6821 14 9 8.2664 9.5648 5.4550 15 6 6.2436 8.4877 4.8616 16 6 5.5601 7.5780 4.0680 17 8 4.2255 7.3944 4.2380 18 6 3.6454 8.0395 5.2698 19 1 4.2214 8.7314 5.8664 20 6 2.3097 7.8148 5.5649 21 7 1.6079 6.9723 4.8377 22 14 1.5058 8.7094 6.9943 23 1 0.9275 9.9902 6.5145 24 1 0.4276 7.8623 7.5648 25 1 2.5231 8.9865 8.0399 26 6 4.5897 4.5841 -0.6019 27 7 3.8732 3.5396 -0.9296 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8464 -0.8901 33 1 3.8568 0.6437 -0.8909 34 1 3.8574 0.6435 0.8891 35 1 5.4385 2.4486 1.7285 36 1 6.7328 5.8715 0.5492 37 1 7.0686 4.5863 1.7341 38 1 4.6100 5.8007 2.4106 39 1 8.1425 6.4953 2.1623 40 1 9.3437 8.1124 3.5753 41 1 5.7152 9.0478 5.6188 42 1 0.6731 6.8154 5.0439 43 1 4.6089 5.5285 -1.1255 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779605099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:29 Heat of formation + Delta-G solvation = -4.502815 kcal Electronic energy + Delta-G solvation = -27600.993769 eV Core-core repulsion = 23370.884473 eV Total energy + Delta-G solvation = -4230.109296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.01899 -41.29943 -39.13238 -38.25395 -36.61430 -35.01827 -33.70407 -32.29138 -30.79972 -29.74232 -29.22368 -27.63510 -26.51620 -25.37057 -24.75425 -23.57860 -21.83406 -21.03114 -20.83910 -20.09111 -18.15516 -17.68346 -17.31821 -16.57778 -16.30641 -16.01462 -15.59770 -15.53842 -15.12322 -14.82523 -14.74329 -14.29745 -14.25400 -14.10204 -13.84531 -13.55716 -13.50141 -13.33381 -13.13518 -12.61429 -12.45820 -12.18283 -12.03059 -11.91902 -11.76234 -11.63341 -11.40216 -11.25868 -10.86002 -10.58829 -10.52720 -10.38752 -10.03693 -9.57337 -9.48891 -9.19066 -8.84608 -8.54310 -7.71297 -6.47866 -6.39166 -4.02452 1.78041 2.15615 2.24214 2.27207 2.70122 3.12159 3.13806 3.18208 3.49469 3.94476 4.29866 4.37636 4.49998 4.62405 4.77215 4.86618 4.95388 5.00299 5.04772 5.06663 5.09885 5.24847 5.31351 5.34675 5.35379 5.40115 5.49207 5.62621 5.75430 5.84604 5.86851 6.15460 6.20329 6.47110 6.57619 6.62472 6.70474 6.84670 6.90863 7.05698 7.13417 7.26910 7.63058 7.65977 7.94031 8.09159 8.48826 8.99179 9.66242 10.70187 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008768 B = 0.003162 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.674796 B = 8851.664386 C =11668.850911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.049 3.951 4 C 0.141 3.859 5 N -0.374 5.374 6 C 0.081 3.919 7 C -0.248 4.248 8 C 0.212 3.788 9 N -0.742 5.742 10 C 0.156 3.844 11 C -0.148 4.148 12 C -0.194 4.194 13 C 0.083 3.917 14 F -0.158 7.158 15 C -0.241 4.241 16 C 0.120 3.880 17 O -0.176 6.176 18 C -0.385 4.385 19 H 0.091 0.909 20 C 0.040 3.960 21 N -0.864 5.864 22 Si 0.939 3.061 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.267 1.267 26 C 0.070 3.930 27 N -0.300 5.300 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.176 0.824 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.409 0.591 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.268 0.732 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -11.073 -9.263 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.019 3.981 5 N -0.157 5.157 6 C -0.066 4.066 7 C -0.259 4.259 8 C 0.086 3.914 9 N -0.376 5.376 10 C 0.054 3.946 11 C -0.172 4.172 12 C -0.214 4.214 13 C 0.063 3.937 14 F -0.138 7.138 15 C -0.262 4.262 16 C 0.065 3.935 17 O -0.081 6.081 18 C -0.462 4.462 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.500 5.500 22 Si 0.764 3.236 23 H -0.199 1.199 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.117 4.117 27 N -0.120 5.120 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.193 0.807 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.245 0.755 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.078 0.922 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.620 -12.171 -10.313 16.166 hybrid contribution -0.317 1.203 1.611 2.035 sum 2.303 -10.968 -8.702 14.189 Atomic orbital electron populations 1.22774 0.79989 1.02938 1.00558 1.87748 1.20576 1.27124 1.95651 1.22688 0.92637 0.85180 1.02323 1.21336 0.92605 0.79166 1.04989 1.48368 1.33745 1.11802 1.21818 1.22432 0.93418 0.95620 0.95149 1.20100 1.08856 0.95450 1.01532 1.19279 0.91676 0.91447 0.88955 1.44522 1.11246 1.44017 1.37855 1.17120 0.90984 0.93191 0.93305 1.19926 0.91576 1.02735 1.02982 1.20294 0.99394 1.01958 0.99786 1.17229 0.90136 0.92697 0.93681 1.91374 1.80999 1.67059 1.74320 1.20786 0.93045 1.05789 1.06628 1.18615 0.85613 0.94725 0.94533 1.83896 1.14162 1.63343 1.46659 1.21286 0.94177 1.23144 1.07544 0.89131 1.25224 0.95464 0.96976 0.98707 1.70028 1.08801 1.33019 1.38104 0.85737 0.79066 0.78853 0.79991 1.19898 1.20351 1.19142 1.23859 0.94183 0.97669 0.95988 1.77338 1.23987 0.96877 1.13820 0.89290 0.93614 0.93769 0.92250 0.91618 0.88992 0.87732 0.80693 0.92207 0.92554 0.75530 0.86072 0.86601 0.84557 0.92176 0.79865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.07 10.70 -35.23 -0.38 -4.44 16 3 C 0.05 0.52 6.12 37.15 0.23 0.74 16 4 C 0.14 1.33 6.88 -4.04 -0.03 1.30 16 5 N -0.37 -4.53 3.68 -61.37 -0.23 -4.75 16 6 C 0.08 0.95 11.36 -17.22 -0.20 0.76 16 7 C -0.25 -3.20 5.47 -105.05 -0.57 -3.77 16 8 C 0.21 2.81 5.40 -5.19 -0.03 2.79 16 9 N -0.74 -13.12 5.72 -59.63 -0.34 -13.46 16 10 C 0.16 3.08 6.67 -83.52 -0.56 2.53 16 11 C -0.15 -2.55 9.31 -39.41 -0.37 -2.92 16 12 C -0.19 -3.46 10.02 -39.48 -0.40 -3.86 16 13 C 0.08 1.69 7.29 -39.43 -0.29 1.40 16 14 F -0.16 -3.13 17.26 2.25 0.04 -3.10 16 15 C -0.24 -5.40 9.14 -39.36 -0.36 -5.76 16 16 C 0.12 2.81 6.67 -38.93 -0.26 2.55 16 17 O -0.18 -4.76 9.00 -0.01 0.00 -4.76 16 18 C -0.39 -10.51 9.49 30.88 0.29 -10.22 16 19 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.51 13.67 55.48 0.76 -23.75 16 22 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 C 0.07 0.93 11.96 -17.37 -0.21 0.72 16 27 N -0.30 -4.19 12.42 30.62 0.38 -3.81 16 28 H 0.09 0.55 8.14 -51.94 -0.42 0.12 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.06 0.74 7.95 -51.93 -0.41 0.32 16 37 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 38 H 0.41 8.22 7.83 -40.82 -0.32 7.90 16 39 H 0.12 1.70 6.73 -52.49 -0.35 1.35 16 40 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.14 3.11 5.64 -52.49 -0.30 2.81 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -31.47 376.33 -6.27 -37.74 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.43 Total: 10.65 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -1.72 Total: -11.38 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.57 Total: -45.78 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.38 Total: -9.20 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.47 -6.27 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779605099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.239 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds