Wall clock time and date at job start Tue Mar 31 2020 18:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00564 * 2 1 4 4 C 1.52994 * 109.47448 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47148 * 179.97438 * 4 3 2 6 6 C 1.34950 * 126.03386 * 125.25933 * 5 4 3 7 7 C 1.35317 * 107.74253 * 180.14765 * 6 5 4 8 8 C 1.50703 * 126.04015 * 179.87836 * 7 6 5 9 9 N 1.46507 * 109.46492 * 269.71475 * 8 7 6 10 10 C 1.39930 * 119.99400 * 180.02562 * 9 8 7 11 11 C 1.38713 * 120.08087 * 359.97438 * 10 9 8 12 12 C 1.38220 * 120.01472 * 180.02562 * 11 10 9 13 13 C 1.38523 * 120.17655 * 359.97438 * 12 11 10 14 14 F 1.35100 * 119.92147 * 180.02562 * 13 12 11 15 15 C 1.38356 * 120.16160 * 0.04310 * 13 12 11 16 16 C 1.38728 * 119.97962 * 359.93798 * 15 13 12 17 17 O 1.35794 * 120.08527 * 180.31488 * 16 15 13 18 18 C 1.34801 * 117.00313 * 354.40800 * 17 16 15 19 19 H 1.07999 * 119.99778 * 5.07674 * 18 17 16 20 20 C 1.38630 * 119.99970 * 185.07462 * 18 17 16 21 21 N 1.31578 * 120.00229 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99858 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47295 * 89.99681 * 22 20 18 24 24 H 1.48504 * 109.46766 * 209.99812 * 22 20 18 25 25 H 1.48495 * 109.47126 * 329.99633 * 22 20 18 26 26 C 1.39871 * 107.92214 * 359.60953 * 7 6 5 27 27 N 1.30835 * 108.20123 * 0.24041 * 26 7 6 28 28 H 1.08989 * 109.47660 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47055 * 300.00385 * 1 2 3 30 30 H 1.09000 * 109.47125 * 59.99792 * 1 2 3 31 31 H 1.09001 * 109.47362 * 59.99357 * 3 2 1 32 32 H 1.09008 * 109.46922 * 299.99964 * 3 2 1 33 33 H 1.09003 * 109.47274 * 59.99848 * 4 3 2 34 34 H 1.08998 * 109.47012 * 299.99698 * 4 3 2 35 35 H 1.07999 * 126.13069 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.47218 * 149.71428 * 8 7 6 37 37 H 1.09000 * 109.47059 * 29.70946 * 8 7 6 38 38 H 0.96997 * 119.99932 * 359.97438 * 9 8 7 39 39 H 1.07995 * 119.99180 * 0.02562 * 11 10 9 40 40 H 1.07999 * 119.90929 * 180.02562 * 12 11 10 41 41 H 1.07997 * 120.01567 * 179.97438 * 15 13 12 42 42 H 0.96997 * 120.00612 * 180.02562 * 21 20 18 43 43 H 1.07998 * 125.90200 * 180.22182 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0303 2.9921 0.8893 7 6 5.3263 4.2665 0.5440 8 6 6.2852 5.1800 1.2631 9 7 5.5626 5.9367 2.2886 10 6 6.2466 6.8563 3.0914 11 6 7.6088 7.0524 2.9180 12 6 8.2832 7.9608 3.7121 13 6 7.6023 8.6778 4.6821 14 9 8.2664 9.5648 5.4550 15 6 6.2436 8.4877 4.8616 16 6 5.5601 7.5780 4.0680 17 8 4.2255 7.3944 4.2380 18 6 3.6454 8.0395 5.2698 19 1 4.2214 8.7314 5.8664 20 6 2.3097 7.8148 5.5649 21 7 1.6079 6.9723 4.8377 22 14 1.5058 8.7094 6.9943 23 1 0.9275 9.9902 6.5145 24 1 0.4276 7.8623 7.5648 25 1 2.5231 8.9865 8.0399 26 6 4.5897 4.5841 -0.6019 27 7 3.8732 3.5396 -0.9296 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8464 -0.8901 33 1 3.8568 0.6437 -0.8909 34 1 3.8574 0.6435 0.8891 35 1 5.4385 2.4486 1.7285 36 1 6.7328 5.8715 0.5492 37 1 7.0686 4.5863 1.7341 38 1 4.6100 5.8007 2.4106 39 1 8.1425 6.4953 2.1623 40 1 9.3437 8.1124 3.5753 41 1 5.7152 9.0478 5.6188 42 1 0.6731 6.8154 5.0439 43 1 4.6089 5.5285 -1.1255 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779605099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:28 Heat of formation + Delta-G solvation = -24.951149 kcal Electronic energy + Delta-G solvation = -27601.880475 eV Core-core repulsion = 23370.884473 eV Total energy + Delta-G solvation = -4230.996002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.58426 -42.24764 -40.78618 -39.04306 -38.26214 -36.31222 -34.67992 -34.23886 -31.93698 -30.85629 -30.67350 -28.93302 -27.36699 -27.22853 -25.89960 -24.46456 -23.41774 -22.55863 -21.76156 -21.12640 -19.95571 -19.26566 -18.33100 -17.63181 -17.43805 -17.24528 -16.89280 -16.73187 -16.41326 -16.41007 -15.93893 -15.64274 -15.51256 -15.44306 -15.09516 -15.01947 -14.90326 -14.63605 -14.30379 -13.80758 -13.66102 -13.52558 -13.36718 -13.12708 -12.95059 -12.86077 -12.59149 -12.40674 -12.35855 -12.18695 -11.98731 -11.58202 -11.46528 -10.83425 -10.77756 -10.60677 -10.44589 -9.51976 -9.36931 -8.45099 -7.92744 -6.06524 0.56102 0.68862 0.84539 1.35145 1.39976 1.42243 1.50456 1.67619 2.17371 2.72343 2.82575 2.97050 3.15622 3.40554 3.55201 3.71729 3.83752 3.90377 3.99708 4.09048 4.17597 4.26449 4.32178 4.37754 4.42003 4.49824 4.53815 4.60751 4.61800 4.76732 4.77770 4.85602 4.92255 5.08027 5.18312 5.22590 5.39954 5.50849 5.53905 5.62543 5.91633 5.99120 6.05336 6.11924 6.66354 6.67849 6.91485 7.01326 7.80034 8.76680 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008768 B = 0.003162 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.674796 B = 8851.664386 C =11668.850911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.056 3.944 4 C 0.138 3.862 5 N -0.375 5.375 6 C 0.084 3.916 7 C -0.264 4.264 8 C 0.213 3.787 9 N -0.743 5.743 10 C 0.158 3.842 11 C -0.135 4.135 12 C -0.162 4.162 13 C 0.059 3.941 14 F -0.158 7.158 15 C -0.247 4.247 16 C 0.077 3.923 17 O -0.217 6.217 18 C -0.406 4.406 19 H 0.092 0.908 20 C -0.015 4.015 21 N -0.913 5.913 22 Si 1.008 2.992 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.259 1.259 26 C 0.060 3.940 27 N -0.329 5.329 28 H 0.110 0.890 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.203 0.797 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.393 0.607 39 H 0.167 0.833 40 H 0.157 0.843 41 H 0.118 0.882 42 H 0.270 0.730 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -11.957 -9.703 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.022 4.022 4 C 0.017 3.983 5 N -0.158 5.158 6 C -0.063 4.063 7 C -0.275 4.275 8 C 0.089 3.911 9 N -0.374 5.374 10 C 0.055 3.945 11 C -0.159 4.159 12 C -0.182 4.182 13 C 0.038 3.962 14 F -0.137 7.137 15 C -0.269 4.269 16 C 0.024 3.976 17 O -0.123 6.123 18 C -0.482 4.482 19 H 0.109 0.891 20 C -0.213 4.213 21 N -0.552 5.552 22 Si 0.828 3.172 23 H -0.191 1.191 24 H -0.195 1.195 25 H -0.183 1.183 26 C -0.126 4.126 27 N -0.150 5.150 28 H 0.128 0.872 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.146 0.854 35 H 0.220 0.780 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.227 0.773 39 H 0.184 0.816 40 H 0.174 0.826 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.079 -13.067 -10.791 17.691 hybrid contribution -0.822 1.403 1.606 2.285 sum 4.257 -11.664 -9.185 15.444 Atomic orbital electron populations 1.22970 0.78889 1.04392 1.00695 1.87730 1.21847 1.26776 1.95630 1.22557 0.93564 0.85172 1.00915 1.21556 0.91669 0.78283 1.06768 1.48578 1.33614 1.12212 1.21394 1.22914 0.92604 0.95568 0.95208 1.20147 1.09638 0.95994 1.01752 1.19515 0.91718 0.91638 0.88231 1.44805 1.10717 1.43674 1.38167 1.17440 0.91998 0.92720 0.92363 1.20420 0.90250 1.02109 1.03120 1.20816 1.01138 0.99224 0.96982 1.17351 0.89491 0.94109 0.95243 1.91373 1.80660 1.67136 1.74496 1.20836 0.94343 1.05515 1.06159 1.19115 0.85031 0.96687 0.96723 1.83863 1.16077 1.64944 1.47465 1.21641 0.94883 1.23568 1.08136 0.89075 1.26315 0.95726 0.97831 1.01424 1.70153 1.09157 1.35416 1.40429 0.84727 0.78094 0.77736 0.76609 1.19096 1.19532 1.18262 1.24166 0.94017 0.98046 0.96403 1.77292 1.24870 0.97725 1.15146 0.87218 0.93847 0.93308 0.93887 0.92824 0.87782 0.85357 0.78006 0.90547 0.90288 0.77346 0.81562 0.82583 0.86381 0.92118 0.78776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -8.05 10.70 -148.98 -1.59 -9.65 16 3 C 0.06 1.16 6.12 71.98 0.44 1.61 16 4 C 0.14 2.43 6.88 86.38 0.59 3.03 16 5 N -0.38 -8.68 3.68 -348.06 -1.28 -9.96 16 6 C 0.08 1.84 11.36 83.54 0.95 2.79 16 7 C -0.26 -6.38 5.47 -20.14 -0.11 -6.49 16 8 C 0.21 5.03 5.40 85.63 0.46 5.49 16 9 N -0.74 -25.48 5.72 -342.56 -1.96 -27.44 16 10 C 0.16 6.06 6.67 38.26 0.26 6.31 16 11 C -0.14 -4.10 9.31 22.38 0.21 -3.89 16 12 C -0.16 -5.10 10.02 22.33 0.22 -4.87 16 13 C 0.06 2.31 7.29 22.37 0.16 2.47 16 14 F -0.16 -6.00 17.26 44.97 0.78 -5.22 16 15 C -0.25 -11.29 9.14 22.42 0.20 -11.09 16 16 C 0.08 3.69 6.67 22.69 0.15 3.84 16 17 O -0.22 -12.30 9.00 -22.94 -0.21 -12.50 16 18 C -0.41 -23.29 9.49 67.91 0.64 -22.64 16 19 H 0.09 4.99 5.21 -2.91 -0.02 4.97 16 20 C -0.02 -0.84 5.49 84.82 0.47 -0.37 16 21 N -0.91 -54.22 13.67 21.61 0.30 -53.92 16 22 Si 1.01 43.08 29.55 68.60 2.03 45.11 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 26 C 0.06 1.55 11.96 85.24 1.02 2.57 16 27 N -0.33 -9.11 12.42 -57.02 -0.71 -9.82 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.13 1.64 8.07 -2.39 -0.02 1.62 16 35 H 0.20 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.08 1.59 7.95 -2.39 -0.02 1.57 16 37 H 0.08 1.56 7.95 -2.39 -0.02 1.54 16 38 H 0.39 16.15 7.83 -92.71 -0.73 15.43 16 39 H 0.17 3.59 6.73 -2.91 -0.02 3.57 16 40 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.12 5.68 5.64 -2.91 -0.02 5.67 16 42 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.20 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -72.20 376.33 4.60 -67.60 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: 0.33 Total: 35.41 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 6.92 Total: -19.60 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -3.65 Total: -101.14 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.80 Total: -22.15 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.78 Total: -5.22 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -72.20 4.60 -67.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779605099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.646 kcal (2) G-P(sol) polarization free energy of solvation -72.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds