Wall clock time and date at job start Tue Mar 31 2020 18:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35997 * 117.00016 * 2 1 4 4 C 1.38695 * 119.97526 * 0.02562 * 3 2 1 5 5 C 1.38163 * 120.05291 * 179.97438 * 4 3 2 6 6 C 1.38782 * 120.00278 * 359.97438 * 5 4 3 7 7 N 1.40108 * 120.01815 * 180.27932 * 6 5 4 8 8 C 1.46495 * 120.00690 * 359.72512 * 7 6 5 9 9 C 1.50694 * 109.47496 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00136 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00325 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00147 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46960 * 90.00053 * 12 11 9 14 14 H 1.08003 * 119.99948 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00037 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99911 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00106 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46992 * 60.00641 * 17 15 13 19 19 H 1.48505 * 109.46935 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47270 * 300.00061 * 17 15 13 21 21 C 1.46502 * 119.99955 * 359.97438 * 11 9 8 22 22 C 1.53007 * 109.46988 * 89.99970 * 21 11 9 23 23 C 1.47198 * 109.46986 * 180.02562 * 22 21 11 24 24 N 9.61792 * 75.29820 * 8.91724 * 2 1 3 25 25 C 1.39035 * 119.95032 * 359.97438 * 6 5 4 26 26 F 1.35104 * 120.02422 * 180.02562 * 25 6 5 27 27 C 1.38277 * 119.94450 * 0.02562 * 25 6 5 28 28 H 1.09002 * 109.46544 * 60.00499 * 1 2 3 29 29 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47355 * 300.00519 * 1 2 3 31 31 H 1.07993 * 119.97117 * 359.97323 * 4 3 2 32 32 H 1.08000 * 119.99465 * 180.02562 * 5 4 3 33 33 H 0.97000 * 119.99589 * 179.71967 * 7 6 5 34 34 H 1.09006 * 109.46588 * 300.00213 * 8 7 6 35 35 H 1.08996 * 109.47291 * 59.99633 * 8 7 6 36 36 H 1.09000 * 109.46994 * 209.99668 * 12 11 9 37 37 H 1.08996 * 109.47008 * 329.99746 * 12 11 9 38 38 H 0.96994 * 119.99848 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.47855 * 210.00221 * 21 11 9 40 40 H 1.09007 * 109.47115 * 330.00665 * 21 11 9 41 41 H 1.08998 * 109.47112 * 300.00230 * 22 21 11 42 42 H 1.08999 * 109.46909 * 60.00553 * 22 21 11 43 43 H 1.08003 * 119.99834 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2905 2.3746 0.0005 5 6 1.9161 3.6065 0.0011 6 6 3.3019 3.6811 0.0016 7 7 3.9367 4.9301 0.0081 8 6 3.1376 6.1580 0.0082 9 6 4.0544 7.3540 0.0151 10 8 5.2568 7.1963 0.0199 11 7 3.5380 8.5989 0.0158 12 6 4.4293 9.7616 0.0231 13 6 4.7416 10.1639 -1.3952 14 1 4.3189 9.6088 -2.2195 15 6 5.5671 11.2407 -1.6404 16 7 6.0822 11.9164 -0.6366 17 14 5.9548 11.7390 -3.3985 18 1 4.6949 12.0849 -4.1043 19 1 6.8582 12.9177 -3.3911 20 1 6.6202 10.6104 -4.0976 21 6 2.0854 8.7895 0.0094 22 6 1.5729 8.8520 1.4497 23 6 0.1134 9.0429 1.4432 24 7 -1.0119 9.1906 1.4420 25 6 4.0598 2.5154 0.0021 26 9 5.4090 2.5863 0.0032 27 6 3.4315 1.2836 0.0016 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2121 2.3171 0.0005 32 1 1.3266 4.5114 0.0019 33 1 4.9053 4.9818 0.0126 34 1 2.5127 6.1847 -0.8846 35 1 2.5048 6.1796 0.8954 36 1 3.9415 10.5901 0.5367 37 1 5.3541 9.5072 0.5407 38 1 6.6632 12.6737 -0.8091 39 1 1.8433 9.7204 -0.5032 40 1 1.6119 7.9555 -0.5088 41 1 1.8150 7.9211 1.9623 42 1 2.0464 9.6859 1.9679 43 1 4.0194 0.3776 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871843018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:46 Heat of formation + Delta-G solvation = -77.473281 kcal Electronic energy + Delta-G solvation = -27891.250734 eV Core-core repulsion = 23657.977202 eV Total energy + Delta-G solvation = -4233.273533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.81753 -41.14505 -40.73039 -38.71237 -37.99571 -36.77667 -35.71349 -34.82736 -32.17519 -31.71690 -30.91773 -29.30029 -28.05617 -27.01842 -25.31616 -24.67105 -23.47809 -22.52079 -20.24732 -19.42898 -18.90572 -18.57798 -18.30111 -17.94100 -17.15149 -17.06566 -16.88257 -16.78560 -16.42998 -16.30582 -16.19671 -15.74748 -15.67239 -15.17548 -14.96301 -14.83252 -14.47235 -14.08391 -13.96458 -13.75608 -13.57428 -13.51521 -13.29768 -13.24316 -13.15572 -12.93227 -12.91336 -12.70176 -12.51835 -12.18369 -12.12621 -11.83075 -11.81241 -11.69595 -10.71485 -10.58471 -10.54551 -9.86071 -9.53149 -8.18760 -8.13054 -6.30437 0.17283 0.51882 1.40157 1.43215 1.49326 1.66161 1.80839 1.89516 2.05352 2.37109 2.41800 2.58606 2.69579 3.10669 3.15598 3.42477 3.65973 3.81830 4.04739 4.06029 4.13440 4.31541 4.34515 4.35568 4.39185 4.52711 4.54074 4.64079 4.71818 4.85014 4.86396 5.06833 5.07657 5.10546 5.15192 5.33456 5.36050 5.56739 5.60207 5.84737 6.11708 6.17052 6.48856 6.60227 6.65218 6.72224 6.80266 7.29403 7.44167 8.87970 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.002847 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.783689 B = 9832.959326 C =11501.729583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.087 3.913 4 C -0.155 4.155 5 C -0.132 4.132 6 C 0.153 3.847 7 N -0.744 5.744 8 C 0.114 3.886 9 C 0.496 3.504 10 O -0.585 6.585 11 N -0.591 5.591 12 C 0.259 3.741 13 C -0.540 4.540 14 H 0.055 0.945 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.955 3.045 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.281 1.281 21 C 0.109 3.891 22 C -0.040 4.040 23 C 0.247 3.753 24 N -0.488 5.488 25 C 0.033 3.967 26 F -0.152 7.152 27 C -0.150 4.150 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.402 0.598 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.039 0.961 37 H 0.004 0.996 38 H 0.265 0.735 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.212 -19.327 3.246 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.041 3.959 4 C -0.174 4.174 5 C -0.155 4.155 6 C 0.050 3.950 7 N -0.377 5.377 8 C -0.013 4.013 9 C 0.285 3.715 10 O -0.465 6.465 11 N -0.321 5.321 12 C 0.138 3.862 13 C -0.579 4.579 14 H 0.073 0.927 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.781 3.219 18 H -0.186 1.186 19 H -0.209 1.209 20 H -0.207 1.207 21 C -0.016 4.016 22 C -0.081 4.081 23 C -0.071 4.071 24 N -0.166 5.166 25 C 0.009 3.991 26 F -0.131 7.131 27 C -0.170 4.170 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.182 0.818 32 H 0.182 0.818 33 H 0.238 0.762 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.057 0.943 37 H 0.022 0.978 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.157 0.843 42 H 0.137 0.863 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.169 -19.024 3.292 25.183 hybrid contribution 1.900 0.812 -0.835 2.229 sum -14.269 -18.213 2.457 23.267 Atomic orbital electron populations 1.23341 0.76375 1.05445 1.02449 1.86039 1.23384 1.26285 1.89410 1.18468 0.90976 0.85347 1.01134 1.21385 1.01542 0.90546 1.03884 1.20688 0.90285 0.99651 1.04881 1.17925 0.93038 0.83923 1.00110 1.44430 1.09080 1.01454 1.82773 1.21338 0.92924 0.81175 1.05885 1.21073 0.88961 0.85375 0.76105 1.90685 1.18178 1.85893 1.51767 1.48009 1.07419 1.05743 1.70904 1.18836 0.89012 0.82673 0.95665 1.21720 1.29432 1.13161 0.93573 0.92695 1.25704 0.95572 0.96531 1.00967 1.70010 1.33282 1.20709 1.32512 0.85649 0.78550 0.77368 0.80334 1.18633 1.20915 1.20704 1.21639 0.78833 1.05694 0.95405 1.19841 0.80574 1.07807 0.99833 1.29043 0.94773 0.91467 0.91799 1.81224 1.14551 1.10909 1.09928 1.17019 0.76437 0.93291 1.12372 1.91438 1.29789 1.97089 1.94804 1.20096 0.93395 0.96481 1.06987 0.91531 0.86747 0.91439 0.81821 0.81833 0.76201 0.86815 0.85568 0.94349 0.97814 0.92593 0.89485 0.86794 0.84340 0.86299 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.76 10.50 -93.51 -0.98 -6.74 16 3 C 0.09 1.64 6.68 22.49 0.15 1.79 16 4 C -0.15 -2.23 9.03 22.36 0.20 -2.03 16 5 C -0.13 -2.12 9.31 22.38 0.21 -1.91 16 6 C 0.15 3.50 6.66 38.14 0.25 3.76 16 7 N -0.74 -19.17 5.72 -342.77 -1.96 -21.13 16 8 C 0.11 2.37 3.95 85.63 0.34 2.71 16 9 C 0.50 16.49 7.74 87.65 0.68 17.16 16 10 O -0.59 -26.45 15.25 -3.02 -0.05 -26.50 16 11 N -0.59 -19.22 2.46 -826.15 -2.03 -21.25 16 12 C 0.26 11.92 5.16 85.63 0.44 12.37 16 13 C -0.54 -28.22 9.39 25.60 0.24 -27.98 16 14 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 15 C 0.01 0.63 5.46 84.65 0.46 1.09 16 16 N -0.93 -52.82 13.29 21.45 0.28 -52.54 16 17 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 C 0.11 2.22 5.17 86.38 0.45 2.66 16 22 C -0.04 -0.58 6.03 28.79 0.17 -0.40 16 23 C 0.25 4.54 15.43 89.45 1.38 5.92 16 24 N -0.49 -12.07 18.53 19.99 0.37 -11.70 16 25 C 0.03 0.83 7.31 22.47 0.16 1.00 16 26 F -0.15 -4.52 16.64 44.97 0.75 -3.78 16 27 C -0.15 -3.33 9.96 22.39 0.22 -3.10 16 28 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 31 H 0.16 1.29 6.29 -2.91 -0.02 1.27 16 32 H 0.16 1.60 6.73 -2.91 -0.02 1.58 16 33 H 0.40 12.84 6.93 -92.71 -0.64 12.20 16 34 H 0.11 1.80 7.22 -2.38 -0.02 1.79 16 35 H 0.13 1.59 6.99 -2.39 -0.02 1.58 16 36 H 0.04 1.74 8.07 -2.39 -0.02 1.72 16 37 H 0.00 0.20 7.42 -2.39 -0.02 0.19 16 38 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.09 2.03 8.07 -2.39 -0.02 2.01 16 40 H 0.11 1.51 6.44 -2.38 -0.02 1.50 16 41 H 0.14 1.24 7.22 -2.39 -0.02 1.22 16 42 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -76.45 377.48 5.31 -71.14 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.43 Total: 13.21 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.48 Total: 14.29 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -3.33 Total: -106.62 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.03 Total: -33.24 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.75 Total: -3.78 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -76.45 5.31 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871843018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.335 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds