Wall clock time and date at job start Tue Mar 31 2020 18:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00457 * 2 1 4 4 C 1.46904 * 111.00049 * 123.95622 * 2 1 3 5 5 C 1.47205 * 109.47089 * 66.04381 * 4 2 1 6 6 C 3.42799 * 88.27635 * 165.66586 * 2 1 3 7 7 C 4.81131 * 84.59355 * 171.74922 * 2 1 3 8 8 N 1.46501 * 109.47305 * 148.08734 * 7 6 5 9 9 C 1.34773 * 120.00110 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99901 * 180.27787 * 9 8 7 12 12 C 1.40138 * 120.00081 * 175.35645 * 11 9 8 13 13 C 1.38688 * 120.07459 * 34.59721 * 12 11 9 14 14 C 1.38200 * 120.02195 * 179.72486 * 13 12 11 15 15 C 1.38549 * 120.17243 * 0.55031 * 14 13 12 16 16 F 1.35101 * 119.92670 * 179.74446 * 15 14 13 17 17 C 1.38350 * 120.14875 * 359.72481 * 15 14 13 18 18 C 1.38734 * 119.97931 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08833 * 180.02562 * 18 17 15 20 20 C 1.34803 * 116.99839 * 5.43667 * 19 18 17 21 21 H 1.08003 * 120.00175 * 354.94414 * 20 19 18 22 22 C 1.38635 * 120.00104 * 174.95430 * 20 19 18 23 23 N 1.31578 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47015 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46901 * 119.99536 * 24 22 20 27 27 H 1.48498 * 109.47335 * 239.99890 * 24 22 20 28 28 H 1.08993 * 109.47323 * 296.04874 * 1 2 3 29 29 H 1.09003 * 109.46648 * 56.04911 * 1 2 3 30 30 H 1.08993 * 109.46958 * 176.04259 * 1 2 3 31 31 H 1.09000 * 109.47571 * 183.94929 * 3 2 1 32 32 H 1.08996 * 109.47202 * 303.95515 * 3 2 1 33 33 H 1.09001 * 109.46727 * 63.95090 * 3 2 1 34 34 H 1.09001 * 109.46546 * 306.04646 * 4 2 1 35 35 H 1.08996 * 109.47429 * 186.04326 * 4 2 1 36 36 H 1.09007 * 109.47449 * 28.09017 * 7 6 5 37 37 H 1.09001 * 109.47622 * 268.09017 * 7 6 5 38 38 H 0.97005 * 119.99663 * 0.02562 * 8 7 6 39 39 H 0.96998 * 120.00000 * 355.35605 * 11 9 8 40 40 H 1.08002 * 119.98910 * 359.97438 * 13 12 11 41 41 H 1.07996 * 119.91679 * 180.24909 * 14 13 12 42 42 H 1.07999 * 120.00662 * 180.02562 * 17 15 14 43 43 H 0.96996 * 120.00069 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6452 -2.1867 0.9766 6 6 1.3659 -3.3198 0.8483 7 6 1.0157 -4.7403 0.6874 8 7 2.0569 -5.4148 -0.0918 9 6 1.9483 -6.7299 -0.3656 10 8 0.9858 -7.3566 0.0336 11 7 2.9090 -7.3516 -1.0776 12 6 2.8460 -8.7370 -1.2795 13 6 1.6172 -9.3621 -1.4300 14 6 1.5565 -10.7275 -1.6347 15 6 2.7207 -11.4775 -1.6790 16 9 2.6553 -12.8127 -1.8742 17 6 3.9500 -10.8620 -1.5240 18 6 4.0184 -9.4909 -1.3234 19 8 5.2237 -8.8845 -1.1716 20 6 6.3199 -9.6513 -1.3381 21 1 6.2160 -10.7140 -1.5001 22 6 7.5806 -9.0758 -1.3013 23 7 7.7072 -7.7810 -1.1043 24 14 9.0995 -10.1384 -1.5314 25 1 8.6893 -11.5511 -1.7342 26 1 9.8579 -9.6674 -2.7181 27 1 9.9589 -10.0415 -0.3242 28 1 -0.3633 0.4512 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8722 0.9233 34 1 1.5610 -0.3873 2.0628 35 1 3.0797 -0.6612 1.1756 36 1 0.0616 -4.8227 0.1666 37 1 0.9356 -5.2083 1.6686 38 1 2.8250 -4.9149 -0.4100 39 1 3.6441 -6.8402 -1.4504 40 1 0.7075 -8.7812 -1.3912 41 1 0.5989 -11.2120 -1.7557 42 1 4.8560 -11.4487 -1.5593 43 1 8.5892 -7.3782 -1.0789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930385591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:10 Heat of formation + Delta-G solvation = -7.588045 kcal Electronic energy + Delta-G solvation = -27071.095109 eV Core-core repulsion = 22840.852028 eV Total energy + Delta-G solvation = -4230.243081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.22277 -40.23215 -38.79041 -37.99323 -36.50497 -35.30426 -34.02681 -32.84322 -32.39309 -29.52979 -29.14088 -28.01101 -27.90319 -25.87668 -25.44806 -22.59344 -22.35333 -21.63503 -20.52038 -18.60307 -18.29381 -17.89427 -17.05483 -16.62311 -15.94472 -15.81027 -15.63070 -15.28958 -15.18732 -15.10909 -14.95090 -14.60432 -14.26973 -13.88115 -13.68766 -13.51896 -13.45896 -13.38195 -13.18143 -12.98121 -12.53037 -12.35462 -12.27288 -12.12656 -12.04141 -11.64354 -11.35965 -10.96799 -10.72911 -10.51877 -10.43951 -10.33126 -9.84275 -9.74203 -9.43567 -9.00093 -8.95315 -8.81436 -7.84888 -7.08308 -6.59246 -4.17017 1.86715 2.14565 2.15460 2.33578 3.06417 3.08811 3.14118 3.19800 3.46494 3.66298 3.86075 3.94897 4.37797 4.53513 4.72881 4.82632 4.88571 4.97349 4.98348 5.00667 5.14508 5.20119 5.25497 5.35093 5.46963 5.49850 5.53899 5.57102 5.62804 5.77011 6.06161 6.22480 6.44493 6.49705 6.54727 6.62088 6.71696 6.93674 6.95867 7.09504 7.15962 7.31444 7.35373 7.68814 7.85122 8.25314 8.82605 8.87397 9.48777 10.57864 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.002526 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.006382 B =11084.245338 C =13632.221573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.546 5.546 3 C 0.024 3.976 4 C 0.166 3.834 5 C -0.153 4.153 6 C -0.182 4.182 7 C 0.257 3.743 8 N -0.745 5.745 9 C 0.707 3.293 10 O -0.585 6.585 11 N -0.663 5.663 12 C 0.077 3.923 13 C -0.050 4.050 14 C -0.228 4.228 15 C 0.128 3.872 16 F -0.152 7.152 17 C -0.258 4.258 18 C 0.157 3.843 19 O -0.168 6.168 20 C -0.392 4.392 21 H 0.095 0.905 22 C 0.043 3.957 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.402 0.598 39 H 0.412 0.588 40 H 0.144 0.856 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 13.806 2.051 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.270 5.270 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.155 4.155 6 C -0.184 4.184 7 C 0.134 3.866 8 N -0.402 5.402 9 C 0.408 3.592 10 O -0.464 6.464 11 N -0.309 5.309 12 C -0.018 4.018 13 C -0.070 4.070 14 C -0.249 4.249 15 C 0.108 3.892 16 F -0.131 7.131 17 C -0.279 4.279 18 C 0.101 3.899 19 O -0.071 6.071 20 C -0.468 4.468 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.494 5.494 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.201 1.201 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.237 0.763 39 H 0.248 0.752 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.662 13.426 2.081 17.270 hybrid contribution 1.318 0.093 0.338 1.363 sum -9.344 13.519 2.418 16.611 Atomic orbital electron populations 1.22436 0.86775 1.02795 1.00568 1.61934 1.08629 1.14019 1.42429 1.22409 1.01157 0.87978 1.00845 1.19035 1.00863 0.84018 0.92163 1.21961 0.98714 0.93642 1.01146 1.22158 1.01875 0.93819 1.00536 1.17812 0.90684 0.81166 0.96901 1.45025 1.26862 1.08524 1.59742 1.15782 0.83345 0.81170 0.78876 1.90879 1.32515 1.64706 1.58291 1.42156 1.27498 1.06641 1.54634 1.16649 0.91687 0.81514 1.11924 1.20680 0.96449 0.93581 0.96326 1.20488 0.96585 0.94160 1.13623 1.17464 0.94281 0.76478 1.00967 1.91409 1.97364 1.31552 1.92740 1.20840 0.97313 0.94900 1.14858 1.18821 0.86614 0.89953 0.94489 1.83935 1.10057 1.37184 1.75951 1.21403 0.81903 0.92098 1.51376 0.88772 1.25279 0.98249 0.96435 0.96267 1.70022 1.24588 1.09871 1.44911 0.85620 0.79991 0.79372 0.78362 1.18952 1.20035 1.20081 0.95420 0.91107 0.91037 0.90878 0.90908 0.95360 0.92179 0.88002 0.89135 0.89161 0.76331 0.75217 0.83890 0.85944 0.83975 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.36 60.06 0.56 0.73 16 2 N -0.55 -4.61 5.00 -254.82 -1.27 -5.89 16 3 C 0.02 0.14 9.57 60.06 0.57 0.72 16 4 C 0.17 1.37 5.46 -6.61 -0.04 1.33 16 5 C -0.15 -1.65 12.44 -37.12 -0.46 -2.12 16 6 C -0.18 -2.10 13.46 -37.13 -0.50 -2.60 16 7 C 0.26 3.07 6.15 -6.83 -0.04 3.03 16 8 N -0.74 -10.31 5.54 -68.12 -0.38 -10.68 16 9 C 0.71 12.38 8.41 -86.92 -0.73 11.65 16 10 O -0.59 -11.59 13.76 5.29 0.07 -11.51 16 11 N -0.66 -12.35 5.20 -14.07 -0.07 -12.42 16 12 C 0.08 1.61 6.33 -83.44 -0.53 1.09 16 13 C -0.05 -0.97 8.70 -39.43 -0.34 -1.31 16 14 C -0.23 -4.27 10.02 -39.48 -0.40 -4.67 16 15 C 0.13 2.58 7.29 -39.43 -0.29 2.29 16 16 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 17 C -0.26 -5.67 9.14 -39.36 -0.36 -6.03 16 18 C 0.16 3.65 6.66 -38.94 -0.26 3.39 16 19 O -0.17 -4.41 9.32 0.04 0.00 -4.41 16 20 C -0.39 -10.35 9.49 30.88 0.29 -10.06 16 21 H 0.09 2.35 5.20 -52.48 -0.27 2.07 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 23 N -0.86 -23.47 13.67 55.48 0.76 -22.71 16 24 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.07 0.61 7.29 -51.93 -0.38 0.23 16 31 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.10 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.40 5.04 8.47 -40.82 -0.35 4.70 16 39 H 0.41 7.34 8.59 -40.82 -0.35 6.99 16 40 H 0.14 2.69 6.19 -52.49 -0.32 2.36 16 41 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 42 H 0.14 3.12 5.64 -52.49 -0.30 2.82 16 43 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -30.81 379.44 -8.09 -38.90 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.32 Total: 12.71 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.61 Total: -1.54 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.96 Total: -51.71 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.07 Total: -15.92 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.81 -8.09 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930385591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.310 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds