Wall clock time and date at job start Tue Mar 31 2020 18:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34433 * 126.82551 * 2 1 4 4 N 1.30834 * 108.07803 * 179.97438 * 3 2 1 5 5 C 1.33245 * 109.82808 * 359.97438 * 4 3 2 6 6 C 1.50706 * 125.52560 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46953 * 90.02463 * 6 5 4 8 8 C 1.53006 * 109.46623 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46998 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00237 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00170 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00179 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99844 * 179.97438 * 12 10 9 14 14 H 1.08990 * 109.47027 * 324.99334 * 13 12 10 15 15 C 1.50702 * 109.46710 * 204.99866 * 13 12 10 16 16 H 1.07999 * 120.00052 * 359.97438 * 15 13 12 17 17 C 1.37879 * 119.99633 * 180.02562 * 15 13 12 18 18 N 1.31511 * 120.00289 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99908 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47309 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46954 * 119.99664 * 19 17 15 22 22 H 1.48493 * 109.47474 * 239.99892 * 19 17 15 23 23 C 1.53001 * 109.47189 * 84.99865 * 13 12 10 24 24 F 1.39903 * 109.46954 * 60.00072 * 23 13 12 25 25 F 1.39893 * 109.46927 * 179.97438 * 23 13 12 26 26 F 1.39896 * 109.47069 * 299.99980 * 23 13 12 27 27 N 1.30715 * 108.94879 * 0.26137 * 5 4 3 28 28 H 1.09000 * 109.47206 * 89.97631 * 1 2 3 29 29 H 1.08998 * 109.47342 * 209.97490 * 1 2 3 30 30 H 1.09001 * 109.46849 * 329.97681 * 1 2 3 31 31 H 1.07996 * 125.95766 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46974 * 330.02211 * 6 5 4 33 33 H 1.09001 * 109.46547 * 210.02301 * 6 5 4 34 34 H 1.09000 * 109.47486 * 60.00062 * 7 6 5 35 35 H 1.09001 * 109.47362 * 299.99339 * 7 6 5 36 36 H 1.08993 * 109.46955 * 300.00075 * 8 7 6 37 37 H 1.09000 * 109.47050 * 59.99904 * 8 7 6 38 38 H 0.97010 * 119.99909 * 359.97438 * 9 8 7 39 39 H 0.96996 * 120.00043 * 359.97438 * 12 10 9 40 40 H 0.97000 * 120.00439 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2707 1.0761 0.0000 4 7 3.5096 0.6556 0.0006 5 6 3.5348 -0.6766 0.0015 6 6 4.7776 -1.5290 0.0029 7 6 5.1968 -1.8170 1.4459 8 6 6.4583 -2.6830 1.4472 9 7 6.8601 -2.9582 2.8289 10 6 7.9526 -3.7075 3.0764 11 8 8.6046 -4.1554 2.1530 12 7 8.3220 -3.9612 4.3474 13 6 9.5094 -4.7762 4.6164 14 1 9.5977 -5.5517 3.8557 15 6 9.3816 -5.4169 5.9744 16 1 8.5041 -5.2349 6.5770 17 6 10.3857 -6.2347 6.4480 18 7 11.4546 -6.4559 5.7144 19 14 10.2278 -7.0284 8.1316 20 1 8.9400 -6.6238 8.7508 21 1 10.2645 -8.5059 7.9877 22 1 11.3527 -6.5869 8.9945 23 6 10.7550 -3.8882 4.5865 24 9 10.6416 -2.8928 5.5631 25 9 11.8886 -4.6663 4.8440 26 9 10.8735 -3.2933 3.3259 27 7 2.3067 -1.1243 -0.0041 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 1.9510 2.1077 -0.0004 32 1 5.5810 -1.0008 -0.5104 33 1 4.5742 -2.4686 -0.5108 34 1 4.3934 -2.3453 1.9592 35 1 5.4002 -0.8774 1.9596 36 1 6.2545 -3.6225 0.9336 37 1 7.2619 -2.1551 0.9338 38 1 6.3402 -2.6005 3.5656 39 1 7.8018 -3.6042 5.0841 40 1 12.1611 -7.0309 6.0477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932897326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:55 Heat of formation + Delta-G solvation = -81.044983 kcal Electronic energy + Delta-G solvation = -28547.904254 eV Core-core repulsion = 23792.539062 eV Total energy + Delta-G solvation = -4755.365192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.25749 -45.90857 -45.53020 -42.39274 -39.28103 -36.21145 -34.75430 -34.24850 -32.84250 -32.35858 -31.20105 -28.68260 -27.63035 -25.73975 -24.48418 -22.43234 -22.30284 -21.40060 -20.65967 -20.01929 -18.21470 -17.33829 -16.81137 -16.72939 -16.52719 -16.30173 -16.03510 -15.89873 -15.16419 -15.13089 -14.74452 -14.24012 -14.01285 -13.81639 -13.67958 -13.23707 -13.20321 -12.82359 -12.53327 -12.38378 -12.31667 -12.27381 -12.19658 -12.12785 -11.90181 -11.74247 -11.48379 -11.13316 -11.01763 -10.82522 -10.70464 -10.35714 -10.29684 -10.13588 -9.81921 -9.59128 -9.46261 -8.72800 -8.66396 -8.08812 -6.19281 -4.42648 1.26807 1.94843 2.57720 3.20321 3.23776 3.28908 3.33678 3.81631 3.87130 4.04164 4.22678 4.38875 4.59562 4.64616 4.71069 4.83330 4.86729 4.98143 5.01254 5.05666 5.14614 5.46710 5.58112 5.74536 5.91614 5.93317 5.96269 6.06279 6.10124 6.16604 6.30225 6.42693 6.87237 6.91721 7.28464 7.43719 7.67291 7.75506 7.78568 8.54723 8.73620 9.20514 9.32588 10.72384 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.002092 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.445915 B =13383.298168 C =14003.954187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.388 5.388 3 C 0.252 3.748 4 N -0.540 5.540 5 C 0.230 3.770 6 C -0.023 4.023 7 C -0.122 4.122 8 C 0.143 3.857 9 N -0.754 5.754 10 C 0.698 3.302 11 O -0.584 6.584 12 N -0.728 5.728 13 C 0.262 3.738 14 H 0.085 0.915 15 C -0.550 4.550 16 H 0.077 0.923 17 C 0.064 3.936 18 N -0.839 5.839 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.416 3.584 24 F -0.211 7.211 25 F -0.138 7.138 26 F -0.216 7.216 27 N -0.316 5.316 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.219 0.781 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.392 0.608 39 H 0.394 0.606 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.322 13.215 -8.364 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.179 5.179 3 C -0.045 4.045 4 N -0.267 5.267 5 C -0.052 4.052 6 C -0.063 4.063 7 C -0.161 4.161 8 C 0.018 3.982 9 N -0.411 5.411 10 C 0.398 3.602 11 O -0.462 6.462 12 N -0.380 5.380 13 C 0.156 3.844 14 H 0.103 0.897 15 C -0.587 4.587 16 H 0.095 0.905 17 C -0.145 4.145 18 N -0.473 5.473 19 Si 0.742 3.258 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.359 3.641 24 F -0.193 7.193 25 F -0.119 7.119 26 F -0.198 7.198 27 N -0.144 5.144 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.235 0.765 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.225 0.775 39 H 0.227 0.773 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.487 12.137 -9.265 24.756 hybrid contribution -0.658 0.539 1.548 1.766 sum -20.144 12.676 -7.718 25.021 Atomic orbital electron populations 1.21947 0.73730 1.05015 1.03842 1.50410 1.08132 1.04513 1.54863 1.26063 0.85890 0.95519 0.97002 1.70445 1.20458 1.11231 1.24573 1.24268 0.93706 0.89734 0.97483 1.19853 0.90479 0.97843 0.98150 1.21702 0.97700 1.00770 0.95941 1.21038 0.95277 0.99055 0.82841 1.45059 1.30204 1.57584 1.08263 1.16059 0.80691 0.79315 0.84128 1.90915 1.55414 1.56431 1.43400 1.45263 1.31041 1.56535 1.05179 1.19593 0.76803 0.87182 1.00861 0.89738 1.20918 1.06834 1.30481 1.00493 0.90485 1.25088 0.94456 0.96114 0.98839 1.70419 1.06994 1.33027 1.36831 0.86159 0.78380 0.78888 0.82373 1.19463 1.20601 1.20610 1.23173 0.90158 0.79487 0.71254 1.92980 1.96631 1.64986 1.64669 1.93397 1.53480 1.71919 1.93100 1.93072 1.96943 1.86034 1.43756 1.78078 1.01639 1.07830 1.26904 0.90230 0.88954 0.88885 0.76510 0.88472 0.88999 0.91084 0.90733 0.91588 0.91484 0.77481 0.77295 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.29 11.53 59.84 0.69 0.98 16 2 N -0.39 -3.04 4.04 -69.45 -0.28 -3.32 16 3 C 0.25 1.87 12.66 -90.65 -1.15 0.72 16 4 N -0.54 -5.92 11.19 -11.97 -0.13 -6.06 16 5 C 0.23 2.59 7.39 -156.84 -1.16 1.43 16 6 C -0.02 -0.22 5.84 -27.88 -0.16 -0.38 16 7 C -0.12 -1.22 5.31 -26.73 -0.14 -1.36 16 8 C 0.14 1.84 5.67 -4.04 -0.02 1.82 16 9 N -0.75 -11.36 5.56 -65.23 -0.36 -11.73 16 10 C 0.70 14.38 8.10 -86.93 -0.70 13.67 16 11 O -0.58 -14.44 14.92 5.29 0.08 -14.36 16 12 N -0.73 -15.31 4.99 -59.81 -0.30 -15.61 16 13 C 0.26 6.67 2.21 -69.08 -0.15 6.52 16 14 H 0.09 2.42 7.58 -51.93 -0.39 2.02 16 15 C -0.55 -14.22 8.47 -34.44 -0.29 -14.51 16 16 H 0.08 1.88 7.74 -52.49 -0.41 1.48 16 17 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 18 N -0.84 -23.33 9.50 55.43 0.53 -22.80 16 19 Si 0.92 20.31 29.54 -169.99 -5.02 15.29 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.42 10.95 2.81 37.16 0.10 11.06 16 24 F -0.21 -5.33 16.94 2.25 0.04 -5.29 16 25 F -0.14 -3.90 12.91 2.25 0.03 -3.87 16 26 F -0.22 -5.70 15.68 2.25 0.04 -5.67 16 27 N -0.32 -3.57 12.70 32.43 0.41 -3.16 16 28 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.22 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.39 4.74 8.49 -40.82 -0.35 4.40 16 39 H 0.39 7.09 8.55 -40.82 -0.35 6.75 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -36.17 356.47 -7.54 -43.72 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.86 Total: 5.98 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: -3.08 Total: 21.51 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.14 Total: -62.68 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.08 Total: -14.36 kcal Atomic # 9 Polarization: -14.92 SS G_CDS: 0.10 Total: -14.82 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.17 -7.54 -43.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.327 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds