Wall clock time and date at job start Tue Mar 31 2020 18:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34433 * 126.82551 * 2 1 4 4 N 1.30834 * 108.07803 * 179.97438 * 3 2 1 5 5 C 1.33245 * 109.82808 * 359.97438 * 4 3 2 6 6 C 1.50706 * 125.52560 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46953 * 90.02463 * 6 5 4 8 8 C 1.53006 * 109.46623 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46998 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00237 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00170 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00179 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99844 * 179.97438 * 12 10 9 14 14 H 1.08990 * 109.47027 * 324.99334 * 13 12 10 15 15 C 1.50702 * 109.46710 * 204.99866 * 13 12 10 16 16 H 1.07999 * 120.00052 * 359.97438 * 15 13 12 17 17 C 1.37879 * 119.99633 * 180.02562 * 15 13 12 18 18 N 1.31511 * 120.00289 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99908 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47309 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46954 * 119.99664 * 19 17 15 22 22 H 1.48493 * 109.47474 * 239.99892 * 19 17 15 23 23 C 1.53001 * 109.47189 * 84.99865 * 13 12 10 24 24 F 1.39903 * 109.46954 * 60.00072 * 23 13 12 25 25 F 1.39893 * 109.46927 * 179.97438 * 23 13 12 26 26 F 1.39896 * 109.47069 * 299.99980 * 23 13 12 27 27 N 1.30715 * 108.94879 * 0.26137 * 5 4 3 28 28 H 1.09000 * 109.47206 * 89.97631 * 1 2 3 29 29 H 1.08998 * 109.47342 * 209.97490 * 1 2 3 30 30 H 1.09001 * 109.46849 * 329.97681 * 1 2 3 31 31 H 1.07996 * 125.95766 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46974 * 330.02211 * 6 5 4 33 33 H 1.09001 * 109.46547 * 210.02301 * 6 5 4 34 34 H 1.09000 * 109.47486 * 60.00062 * 7 6 5 35 35 H 1.09001 * 109.47362 * 299.99339 * 7 6 5 36 36 H 1.08993 * 109.46955 * 300.00075 * 8 7 6 37 37 H 1.09000 * 109.47050 * 59.99904 * 8 7 6 38 38 H 0.97010 * 119.99909 * 359.97438 * 9 8 7 39 39 H 0.96996 * 120.00043 * 359.97438 * 12 10 9 40 40 H 0.97000 * 120.00439 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2707 1.0761 0.0000 4 7 3.5096 0.6556 0.0006 5 6 3.5348 -0.6766 0.0015 6 6 4.7776 -1.5290 0.0029 7 6 5.1968 -1.8170 1.4459 8 6 6.4583 -2.6830 1.4472 9 7 6.8601 -2.9582 2.8289 10 6 7.9526 -3.7075 3.0764 11 8 8.6046 -4.1554 2.1530 12 7 8.3220 -3.9612 4.3474 13 6 9.5094 -4.7762 4.6164 14 1 9.5977 -5.5517 3.8557 15 6 9.3816 -5.4169 5.9744 16 1 8.5041 -5.2349 6.5770 17 6 10.3857 -6.2347 6.4480 18 7 11.4546 -6.4559 5.7144 19 14 10.2278 -7.0284 8.1316 20 1 8.9400 -6.6238 8.7508 21 1 10.2645 -8.5059 7.9877 22 1 11.3527 -6.5869 8.9945 23 6 10.7550 -3.8882 4.5865 24 9 10.6416 -2.8928 5.5631 25 9 11.8886 -4.6663 4.8440 26 9 10.8735 -3.2933 3.3259 27 7 2.3067 -1.1243 -0.0041 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 1.9510 2.1077 -0.0004 32 1 5.5810 -1.0008 -0.5104 33 1 4.5742 -2.4686 -0.5108 34 1 4.3934 -2.3453 1.9592 35 1 5.4002 -0.8774 1.9596 36 1 6.2545 -3.6225 0.9336 37 1 7.2619 -2.1551 0.9338 38 1 6.3402 -2.6005 3.5656 39 1 7.8018 -3.6042 5.0841 40 1 12.1611 -7.0309 6.0477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932897326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:54 Heat of formation + Delta-G solvation = -106.434874 kcal Electronic energy + Delta-G solvation = -28549.005242 eV Core-core repulsion = 23792.539062 eV Total energy + Delta-G solvation = -4756.466180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.37765 -48.01063 -47.69189 -43.02168 -40.90567 -37.34451 -36.33484 -35.28310 -34.46786 -33.57228 -32.00082 -30.26855 -28.51032 -26.69269 -26.44732 -23.71389 -22.97109 -22.84873 -21.92315 -21.22860 -19.90944 -18.84665 -18.73744 -18.52639 -17.95273 -17.71158 -17.00124 -16.86762 -16.72439 -16.45830 -16.05599 -15.48262 -15.28388 -15.05573 -14.92160 -14.55460 -14.51040 -14.42318 -14.26596 -14.18351 -13.99625 -13.86417 -13.83103 -13.42941 -13.15642 -12.97240 -12.70817 -12.67518 -12.63342 -12.40228 -12.18591 -11.85054 -11.52695 -11.26693 -10.99083 -10.81176 -10.68004 -10.39394 -10.28245 -9.73854 -8.19150 -6.49720 0.66386 1.47256 1.48260 1.50259 1.61004 1.73682 1.95533 2.17496 2.38753 2.59789 2.96565 3.17771 3.39334 3.57212 3.82422 3.91065 3.92426 4.04340 4.19510 4.22323 4.25659 4.41658 4.45162 4.64289 4.71594 4.75871 4.80212 4.93054 5.16729 5.19309 5.33218 5.42482 5.46420 5.54015 5.59446 5.67880 5.97236 6.16492 6.55803 7.14027 7.18440 7.23604 7.68657 8.73939 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.002092 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.445915 B =13383.298168 C =14003.954187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.389 5.389 3 C 0.259 3.741 4 N -0.579 5.579 5 C 0.216 3.784 6 C -0.021 4.021 7 C -0.101 4.101 8 C 0.142 3.858 9 N -0.732 5.732 10 C 0.694 3.306 11 O -0.629 6.629 12 N -0.721 5.721 13 C 0.270 3.730 14 H 0.046 0.954 15 C -0.559 4.559 16 H 0.093 0.907 17 C 0.013 3.987 18 N -0.875 5.875 19 Si 0.985 3.015 20 H -0.255 1.255 21 H -0.278 1.278 22 H -0.281 1.281 23 C 0.412 3.588 24 F -0.204 7.204 25 F -0.151 7.151 26 F -0.219 7.219 27 N -0.352 5.352 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.265 0.735 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.410 0.590 39 H 0.410 0.590 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.818 14.584 -7.265 28.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.179 5.179 3 C -0.036 4.036 4 N -0.307 5.307 5 C -0.066 4.066 6 C -0.061 4.061 7 C -0.140 4.140 8 C 0.018 3.982 9 N -0.389 5.389 10 C 0.394 3.606 11 O -0.510 6.510 12 N -0.375 5.375 13 C 0.162 3.838 14 H 0.064 0.936 15 C -0.596 4.596 16 H 0.110 0.890 17 C -0.193 4.193 18 N -0.509 5.509 19 Si 0.809 3.191 20 H -0.178 1.178 21 H -0.204 1.204 22 H -0.207 1.207 23 C 0.356 3.644 24 F -0.185 7.185 25 F -0.132 7.132 26 F -0.201 7.201 27 N -0.181 5.181 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.147 0.853 31 H 0.280 0.720 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.246 0.754 39 H 0.246 0.754 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.083 13.556 -8.154 27.164 hybrid contribution 0.011 0.205 1.120 1.139 sum -22.071 13.762 -7.034 26.944 Atomic orbital electron populations 1.22336 0.71113 1.06560 1.05184 1.50691 1.09534 1.03753 1.53941 1.26925 0.84916 0.97059 0.94750 1.70411 1.22711 1.11239 1.26333 1.24371 0.93943 0.90202 0.98074 1.19819 0.90504 0.98089 0.97725 1.21488 0.95996 1.00032 0.96476 1.21166 0.96328 0.99361 0.81315 1.44902 1.28378 1.55684 1.09967 1.16256 0.81525 0.79546 0.83293 1.90885 1.57216 1.58292 1.44587 1.44998 1.30142 1.56250 1.06152 1.19180 0.77980 0.86803 0.99851 0.93637 1.21249 1.07355 1.30402 1.00554 0.88951 1.26026 0.94036 0.96542 1.02653 1.70547 1.07849 1.33822 1.38696 0.85085 0.78774 0.77736 0.77543 1.17847 1.20351 1.20710 1.23351 0.90163 0.79647 0.71242 1.92980 1.96583 1.64635 1.64340 1.93371 1.54280 1.72371 1.93199 1.93062 1.96960 1.86063 1.43994 1.77966 1.02147 1.10056 1.27943 0.88967 0.89433 0.85346 0.71970 0.88268 0.88606 0.90697 0.90537 0.92016 0.92280 0.75370 0.75379 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 11.53 127.77 1.47 1.77 16 2 N -0.39 -5.35 4.04 -373.63 -1.51 -6.86 16 3 C 0.26 3.23 12.66 180.36 2.28 5.52 16 4 N -0.58 -12.01 11.19 -191.79 -2.15 -14.15 16 5 C 0.22 4.73 7.39 138.63 1.03 5.75 16 6 C -0.02 -0.40 5.84 29.85 0.17 -0.22 16 7 C -0.10 -1.92 5.31 30.60 0.16 -1.75 16 8 C 0.14 3.60 5.67 86.38 0.49 4.09 16 9 N -0.73 -21.37 5.56 -478.54 -2.66 -24.03 16 10 C 0.69 28.55 8.10 179.06 1.45 30.00 16 11 O -0.63 -31.77 14.92 -3.99 -0.06 -31.83 16 12 N -0.72 -30.11 4.99 -461.41 -2.30 -32.41 16 13 C 0.27 13.91 2.21 44.24 0.10 14.00 16 14 H 0.05 2.71 7.58 -2.39 -0.02 2.70 16 15 C -0.56 -28.58 8.47 25.60 0.22 -28.37 16 16 H 0.09 4.34 7.74 -2.91 -0.02 4.32 16 17 C 0.01 0.65 5.20 84.66 0.44 1.09 16 18 N -0.87 -49.22 9.50 21.45 0.20 -49.02 16 19 Si 0.99 40.93 29.54 68.60 2.03 42.96 16 20 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 C 0.41 21.99 2.81 71.98 0.20 22.19 16 24 F -0.20 -10.20 16.94 44.97 0.76 -9.43 16 25 F -0.15 -8.71 12.91 44.97 0.58 -8.13 16 26 F -0.22 -11.74 15.68 44.97 0.70 -11.04 16 27 N -0.35 -7.67 12.70 -51.33 -0.65 -8.33 16 28 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.13 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.26 0.23 8.06 -2.91 -0.02 0.21 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.41 9.14 8.49 -92.70 -0.79 8.35 16 39 H 0.41 14.19 8.55 -92.71 -0.79 13.39 16 40 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -79.58 356.47 2.50 -77.09 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.47 Total: 21.10 kcal Atomic # 6 Polarization: 46.06 SS G_CDS: 8.02 Total: 54.08 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -9.06 Total: -134.80 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.06 Total: -31.83 kcal Atomic # 9 Polarization: -30.65 SS G_CDS: 2.05 Total: -28.60 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -79.58 2.50 -77.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.347 kcal (2) G-P(sol) polarization free energy of solvation -79.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds