Wall clock time and date at job start Tue Mar 31 2020 18:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47311 * 2 1 4 4 N 1.28594 * 124.62147 * 90.01820 * 3 2 1 5 5 C 1.31383 * 108.72262 * 179.97438 * 4 3 2 6 6 C 1.50701 * 127.05416 * 180.02562 * 5 4 3 7 7 C 1.39678 * 105.89597 * 0.26312 * 5 4 3 8 8 C 1.50702 * 127.04942 * 179.73537 * 7 5 4 9 9 N 1.46497 * 109.46826 * 90.00080 * 8 7 5 10 10 C 1.34777 * 120.00041 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99650 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00374 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00308 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46932 * 325.00279 * 13 12 10 15 15 C 1.50703 * 109.47131 * 205.00357 * 13 12 10 16 16 H 1.07995 * 119.99712 * 274.93703 * 15 13 12 17 17 C 1.37877 * 120.00180 * 94.94382 * 15 13 12 18 18 N 1.31514 * 120.00008 * 184.87443 * 17 15 13 19 19 Si 1.86805 * 119.99875 * 4.87297 * 17 15 13 20 20 H 1.48504 * 109.46881 * 84.81332 * 19 17 15 21 21 H 1.48495 * 109.46936 * 204.80837 * 19 17 15 22 22 H 1.48494 * 109.47085 * 324.81351 * 19 17 15 23 23 C 1.52993 * 109.47270 * 85.00049 * 13 12 10 24 24 F 1.39899 * 109.47074 * 54.93910 * 23 13 12 25 25 F 1.39895 * 109.47290 * 174.94118 * 23 13 12 26 26 F 1.39903 * 109.47107 * 294.93787 * 23 13 12 27 27 N 1.28601 * 124.61529 * 270.02215 * 3 2 1 28 28 H 1.09000 * 109.46668 * 60.00863 * 1 2 3 29 29 H 1.09000 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47359 * 300.00444 * 1 2 3 31 31 H 1.08998 * 109.47359 * 239.99556 * 2 1 3 32 32 H 1.09003 * 109.46989 * 119.99836 * 2 1 3 33 33 H 1.08998 * 109.47289 * 90.02432 * 6 5 4 34 34 H 1.08994 * 109.46975 * 210.02850 * 6 5 4 35 35 H 1.09002 * 109.46822 * 330.02106 * 6 5 4 36 36 H 1.08996 * 109.47021 * 210.00042 * 8 7 5 37 37 H 1.08999 * 109.47174 * 329.99968 * 8 7 5 38 38 H 0.96998 * 120.00384 * 0.02562 * 9 8 7 39 39 H 0.96998 * 120.00050 * 0.02562 * 12 10 9 40 40 H 0.97004 * 119.99825 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2622 2.0699 1.0582 5 6 2.6839 3.2610 0.6983 6 6 3.0858 4.3947 1.6062 7 6 2.6780 3.2630 -0.6984 8 6 3.0717 4.3995 -1.6065 9 7 4.5028 4.3112 -1.9068 10 6 5.0814 5.2287 -2.7068 11 8 4.4156 6.1300 -3.1787 12 7 6.3981 5.1478 -2.9827 13 6 7.0271 6.1455 -3.8518 14 1 6.3229 6.4477 -4.6269 15 6 8.2548 5.5510 -4.4924 16 1 9.1986 5.5659 -3.9677 17 6 8.1731 4.9883 -5.7485 18 7 9.2198 4.3847 -6.2679 19 14 6.5758 5.0832 -6.7124 20 1 6.5124 6.3768 -7.4391 21 1 6.5188 3.9646 -7.6873 22 1 5.4267 4.9840 -5.7772 23 6 7.4259 7.3666 -3.0209 24 9 8.2379 6.9613 -1.9563 25 9 8.1287 8.2692 -3.8261 26 9 6.2756 7.9861 -2.5205 27 7 2.2615 2.0700 -1.0584 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.1515 4.3252 1.8243 34 1 2.8766 5.3450 1.1153 35 1 2.5200 4.3337 2.5359 36 1 2.5014 4.3383 -2.5333 37 1 2.8619 5.3484 -1.1128 38 1 5.0339 3.5919 -1.5307 39 1 6.9293 4.4290 -2.6060 40 1 9.1622 3.9885 -7.1515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932899175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:48 Heat of formation + Delta-G solvation = -84.621063 kcal Electronic energy + Delta-G solvation = -29517.346499 eV Core-core repulsion = 24761.826236 eV Total energy + Delta-G solvation = -4755.520262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.98278 -46.50234 -46.46702 -43.77536 -39.32447 -35.98876 -34.90385 -34.12320 -32.97591 -32.54532 -31.56228 -29.24761 -28.16245 -26.62229 -24.90159 -23.52183 -21.71977 -21.27804 -21.02237 -20.25660 -18.60483 -17.70240 -17.44203 -17.32767 -16.77077 -16.67086 -16.41355 -15.72484 -14.98292 -14.85242 -14.45974 -14.20262 -14.00070 -13.63790 -13.54012 -13.40952 -13.35752 -13.16212 -12.97512 -12.92879 -12.81125 -12.68228 -12.63817 -12.54424 -12.53182 -12.44773 -11.84193 -11.74530 -11.23947 -11.10218 -10.94640 -10.64909 -10.36054 -10.10496 -9.78005 -9.70668 -9.20277 -8.95572 -8.81188 -8.23489 -6.51720 -4.66705 1.57700 2.01959 2.07679 3.13097 3.23638 3.32699 3.37805 3.69417 3.79671 4.05657 4.13945 4.38853 4.40260 4.57329 4.64802 4.67042 4.80874 4.96363 5.09059 5.17654 5.20607 5.25750 5.31067 5.43425 5.53015 5.54935 5.62122 5.71761 5.78905 6.03171 6.11990 6.32122 6.50885 6.74844 6.91591 7.24632 7.47578 7.94244 8.15568 8.54017 8.67276 9.04733 9.20524 10.56459 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003296 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.879996 B = 8491.931576 C = 9619.114928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.137 3.863 3 N -0.155 5.155 4 N -0.293 5.293 5 C 0.019 3.981 6 C -0.066 4.066 7 C -0.013 4.013 8 C 0.233 3.767 9 N -0.748 5.748 10 C 0.695 3.305 11 O -0.592 6.592 12 N -0.727 5.727 13 C 0.221 3.779 14 H 0.089 0.911 15 C -0.535 4.535 16 H 0.093 0.907 17 C 0.100 3.900 18 N -0.860 5.860 19 Si 0.868 3.132 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.251 1.251 23 C 0.436 3.564 24 F -0.194 7.194 25 F -0.183 7.183 26 F -0.194 7.194 27 N -0.268 5.268 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.394 0.606 39 H 0.396 0.604 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 -7.358 13.213 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 N -0.056 5.056 4 N -0.134 5.134 5 C -0.145 4.145 6 C -0.125 4.125 7 C -0.176 4.176 8 C 0.107 3.893 9 N -0.406 5.406 10 C 0.395 3.605 11 O -0.470 6.470 12 N -0.382 5.382 13 C 0.117 3.883 14 H 0.107 0.893 15 C -0.573 4.573 16 H 0.111 0.889 17 C -0.110 4.110 18 N -0.493 5.493 19 Si 0.693 3.307 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.175 1.175 23 C 0.380 3.620 24 F -0.175 7.175 25 F -0.164 7.164 26 F -0.176 7.176 27 N -0.110 5.110 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.227 0.773 39 H 0.232 0.768 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.726 -7.929 12.612 20.948 hybrid contribution 0.090 0.122 -0.064 0.165 sum -14.636 -7.807 12.548 20.800 Atomic orbital electron populations 1.22182 0.93174 1.03841 1.03684 1.21975 0.95980 0.74462 1.05813 1.48032 1.45039 1.13252 0.99295 1.73996 1.18364 1.05241 1.15836 1.23140 1.03369 0.94282 0.93689 1.20114 1.02115 0.92974 0.97297 1.23051 1.06504 0.94304 0.93765 1.19069 0.81502 0.92244 0.96501 1.45145 1.09228 1.31941 1.54270 1.16354 0.83051 0.81937 0.79131 1.90887 1.63243 1.36080 1.56772 1.46722 1.06513 1.31909 1.53037 1.19868 0.96666 0.83845 0.87920 0.89298 1.20755 0.93615 1.40638 1.02269 0.88912 1.25004 0.96781 0.92420 0.96795 1.69864 1.29913 1.32308 1.17168 0.86925 0.84193 0.78910 0.80693 1.19018 1.20685 1.17500 1.21788 0.74156 0.87037 0.79004 1.93059 1.74491 1.90651 1.59329 1.93101 1.79768 1.70067 1.73512 1.93146 1.50495 1.85190 1.88755 1.74050 1.16292 1.04904 1.15776 0.91351 0.89606 0.91470 0.87321 0.87418 0.90121 0.89846 0.90699 0.90225 0.89514 0.77263 0.76850 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.14 0.95 7.26 -4.05 -0.03 0.92 16 3 N -0.16 -1.77 3.95 -10.62 -0.04 -1.82 16 4 N -0.29 -3.58 12.05 33.72 0.41 -3.17 16 5 C 0.02 0.22 7.35 -82.25 -0.60 -0.38 16 6 C -0.07 -0.60 10.34 36.01 0.37 -0.22 16 7 C -0.01 -0.17 6.72 -82.25 -0.55 -0.73 16 8 C 0.23 3.24 6.12 -5.19 -0.03 3.21 16 9 N -0.75 -11.57 5.55 -66.42 -0.37 -11.94 16 10 C 0.69 13.80 8.22 -86.92 -0.71 13.09 16 11 O -0.59 -13.69 14.91 5.29 0.08 -13.61 16 12 N -0.73 -14.82 4.91 -59.82 -0.29 -15.12 16 13 C 0.22 5.15 1.71 -69.08 -0.12 5.03 16 14 H 0.09 2.22 4.73 -51.93 -0.25 1.97 16 15 C -0.54 -13.73 8.52 -34.44 -0.29 -14.02 16 16 H 0.09 2.56 8.00 -52.49 -0.42 2.14 16 17 C 0.10 2.63 5.47 -17.82 -0.10 2.54 16 18 N -0.86 -23.71 13.96 55.43 0.77 -22.94 16 19 Si 0.87 20.43 26.99 -169.99 -4.59 15.84 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.25 -6.06 6.82 56.52 0.39 -5.68 16 23 C 0.44 9.83 2.83 37.15 0.11 9.93 16 24 F -0.19 -4.18 16.93 2.25 0.04 -4.14 16 25 F -0.18 -4.20 16.89 2.25 0.04 -4.16 16 26 F -0.19 -4.34 15.83 2.25 0.04 -4.31 16 27 N -0.27 -3.57 12.05 33.72 0.41 -3.16 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.69 7.50 -51.93 -0.39 0.30 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.13 7.50 -51.93 -0.39 0.74 16 38 H 0.39 5.35 8.48 -40.82 -0.35 5.01 16 39 H 0.40 7.26 8.61 -40.82 -0.35 6.90 16 40 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -32.28 358.09 -4.38 -36.66 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.67 Total: 7.68 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: -1.58 Total: 18.79 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.88 Total: -58.14 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 9 Polarization: -12.72 SS G_CDS: 0.11 Total: -12.61 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.59 Total: 15.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.28 -4.38 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932899175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.963 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds