Wall clock time and date at job start Tue Mar 31 2020 18:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47311 * 2 1 4 4 N 1.28594 * 124.62147 * 90.01820 * 3 2 1 5 5 C 1.31383 * 108.72262 * 179.97438 * 4 3 2 6 6 C 1.50701 * 127.05416 * 180.02562 * 5 4 3 7 7 C 1.39678 * 105.89597 * 0.26312 * 5 4 3 8 8 C 1.50702 * 127.04942 * 179.73537 * 7 5 4 9 9 N 1.46497 * 109.46826 * 90.00080 * 8 7 5 10 10 C 1.34777 * 120.00041 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99650 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00374 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00308 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46932 * 325.00279 * 13 12 10 15 15 C 1.50703 * 109.47131 * 205.00357 * 13 12 10 16 16 H 1.07995 * 119.99712 * 274.93703 * 15 13 12 17 17 C 1.37877 * 120.00180 * 94.94382 * 15 13 12 18 18 N 1.31514 * 120.00008 * 184.87443 * 17 15 13 19 19 Si 1.86805 * 119.99875 * 4.87297 * 17 15 13 20 20 H 1.48504 * 109.46881 * 84.81332 * 19 17 15 21 21 H 1.48495 * 109.46936 * 204.80837 * 19 17 15 22 22 H 1.48494 * 109.47085 * 324.81351 * 19 17 15 23 23 C 1.52993 * 109.47270 * 85.00049 * 13 12 10 24 24 F 1.39899 * 109.47074 * 54.93910 * 23 13 12 25 25 F 1.39895 * 109.47290 * 174.94118 * 23 13 12 26 26 F 1.39903 * 109.47107 * 294.93787 * 23 13 12 27 27 N 1.28601 * 124.61529 * 270.02215 * 3 2 1 28 28 H 1.09000 * 109.46668 * 60.00863 * 1 2 3 29 29 H 1.09000 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47359 * 300.00444 * 1 2 3 31 31 H 1.08998 * 109.47359 * 239.99556 * 2 1 3 32 32 H 1.09003 * 109.46989 * 119.99836 * 2 1 3 33 33 H 1.08998 * 109.47289 * 90.02432 * 6 5 4 34 34 H 1.08994 * 109.46975 * 210.02850 * 6 5 4 35 35 H 1.09002 * 109.46822 * 330.02106 * 6 5 4 36 36 H 1.08996 * 109.47021 * 210.00042 * 8 7 5 37 37 H 1.08999 * 109.47174 * 329.99968 * 8 7 5 38 38 H 0.96998 * 120.00384 * 0.02562 * 9 8 7 39 39 H 0.96998 * 120.00050 * 0.02562 * 12 10 9 40 40 H 0.97004 * 119.99825 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2622 2.0699 1.0582 5 6 2.6839 3.2610 0.6983 6 6 3.0858 4.3947 1.6062 7 6 2.6780 3.2630 -0.6984 8 6 3.0717 4.3995 -1.6065 9 7 4.5028 4.3112 -1.9068 10 6 5.0814 5.2287 -2.7068 11 8 4.4156 6.1300 -3.1787 12 7 6.3981 5.1478 -2.9827 13 6 7.0271 6.1455 -3.8518 14 1 6.3229 6.4477 -4.6269 15 6 8.2548 5.5510 -4.4924 16 1 9.1986 5.5659 -3.9677 17 6 8.1731 4.9883 -5.7485 18 7 9.2198 4.3847 -6.2679 19 14 6.5758 5.0832 -6.7124 20 1 6.5124 6.3768 -7.4391 21 1 6.5188 3.9646 -7.6873 22 1 5.4267 4.9840 -5.7772 23 6 7.4259 7.3666 -3.0209 24 9 8.2379 6.9613 -1.9563 25 9 8.1287 8.2692 -3.8261 26 9 6.2756 7.9861 -2.5205 27 7 2.2615 2.0700 -1.0584 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.1515 4.3252 1.8243 34 1 2.8766 5.3450 1.1153 35 1 2.5200 4.3337 2.5359 36 1 2.5014 4.3383 -2.5333 37 1 2.8619 5.3484 -1.1128 38 1 5.0339 3.5919 -1.5307 39 1 6.9293 4.4290 -2.6060 40 1 9.1622 3.9885 -7.1515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932899175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:47 Heat of formation + Delta-G solvation = -108.532973 kcal Electronic energy + Delta-G solvation = -29518.383397 eV Core-core repulsion = 24761.826236 eV Total energy + Delta-G solvation = -4756.557161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.80206 -48.30141 -48.29888 -44.67543 -40.91676 -37.14988 -36.37053 -35.37230 -34.47877 -33.85249 -32.49599 -30.87005 -29.01224 -27.72558 -26.83734 -24.24713 -23.29833 -22.33708 -21.95906 -21.87912 -20.35496 -19.34557 -19.07483 -18.61361 -18.35654 -18.27533 -17.55053 -17.28238 -16.29350 -16.17858 -15.74823 -15.41882 -15.27542 -15.17186 -14.92510 -14.85228 -14.75320 -14.59169 -14.49440 -14.44299 -14.36309 -14.24639 -14.14154 -13.69048 -13.41505 -13.40137 -13.04199 -13.00123 -12.52876 -12.33650 -12.13017 -11.97481 -11.87755 -11.81214 -11.48076 -11.19755 -10.97015 -10.33829 -10.09102 -9.81055 -8.54464 -6.72545 0.63457 1.06850 1.28537 1.32912 1.34217 1.45810 1.85129 2.00200 2.18759 2.33098 2.85918 2.95247 3.22077 3.41639 3.45057 3.56907 3.80020 3.90036 3.91296 3.96561 4.19252 4.30961 4.40984 4.57262 4.68061 4.69322 4.80599 4.80923 4.94390 4.96962 5.08323 5.14833 5.32518 5.42798 5.53707 5.70910 5.83643 6.11585 6.45414 7.01200 7.15190 7.24483 7.62561 8.57699 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003296 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.879996 B = 8491.931576 C = 9619.114928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 N -0.150 5.150 4 N -0.303 5.303 5 C 0.016 3.984 6 C -0.066 4.066 7 C -0.027 4.027 8 C 0.238 3.762 9 N -0.730 5.730 10 C 0.696 3.304 11 O -0.623 6.623 12 N -0.725 5.725 13 C 0.229 3.771 14 H 0.077 0.923 15 C -0.535 4.535 16 H 0.067 0.933 17 C 0.065 3.935 18 N -0.897 5.897 19 Si 0.920 3.080 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.260 1.260 23 C 0.439 3.561 24 F -0.187 7.187 25 F -0.186 7.186 26 F -0.191 7.191 27 N -0.286 5.286 28 H 0.052 0.948 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.406 0.594 39 H 0.408 0.592 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.063 -8.225 14.290 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.005 3.995 3 N -0.052 5.052 4 N -0.145 5.145 5 C -0.147 4.147 6 C -0.125 4.125 7 C -0.188 4.188 8 C 0.112 3.888 9 N -0.387 5.387 10 C 0.396 3.604 11 O -0.504 6.504 12 N -0.380 5.380 13 C 0.123 3.877 14 H 0.095 0.905 15 C -0.573 4.573 16 H 0.085 0.915 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.743 3.257 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.184 1.184 23 C 0.383 3.617 24 F -0.169 7.169 25 F -0.168 7.168 26 F -0.172 7.172 27 N -0.130 5.130 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.241 0.759 39 H 0.244 0.756 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.059 -8.834 13.727 22.899 hybrid contribution 0.453 0.323 -0.283 0.625 sum -15.605 -8.511 13.443 22.287 Atomic orbital electron populations 1.22144 0.92175 1.05358 1.02405 1.22458 0.96814 0.72746 1.07440 1.48538 1.43940 1.14136 0.98617 1.74001 1.18795 1.05541 1.16203 1.23534 1.02775 0.94818 0.93540 1.20228 1.02651 0.92211 0.97390 1.22860 1.07707 0.94148 0.94114 1.19058 0.79951 0.93387 0.96382 1.44956 1.10045 1.30945 1.52739 1.16327 0.82456 0.82241 0.79376 1.90869 1.63765 1.37607 1.58124 1.46214 1.07129 1.31798 1.52908 1.19570 0.95451 0.84338 0.88315 0.90526 1.20691 0.93529 1.40693 1.02374 0.91455 1.25534 0.98917 0.92239 0.97515 1.69927 1.31508 1.33809 1.17928 0.86130 0.80797 0.79191 0.79560 1.18667 1.19751 1.18417 1.21628 0.74265 0.86725 0.79112 1.93070 1.74302 1.90584 1.58934 1.93095 1.79858 1.70151 1.73676 1.93153 1.50325 1.85074 1.88672 1.73999 1.16766 1.05373 1.16867 0.92896 0.86693 0.92343 0.86130 0.85404 0.89467 0.89218 0.89474 0.91372 0.88460 0.75927 0.75566 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.24 71.98 0.74 -0.80 16 2 C 0.12 1.45 7.26 86.38 0.63 2.08 16 3 N -0.15 -3.19 3.95 -187.52 -0.74 -3.93 16 4 N -0.30 -6.90 12.05 -47.24 -0.57 -7.47 16 5 C 0.02 0.35 7.35 42.98 0.32 0.67 16 6 C -0.07 -1.06 10.34 71.24 0.74 -0.32 16 7 C -0.03 -0.66 6.72 42.97 0.29 -0.37 16 8 C 0.24 6.32 6.12 85.63 0.52 6.85 16 9 N -0.73 -21.48 5.55 -482.31 -2.68 -24.16 16 10 C 0.70 26.76 8.22 179.06 1.47 28.24 16 11 O -0.62 -28.18 14.91 -4.00 -0.06 -28.24 16 12 N -0.72 -28.81 4.91 -461.42 -2.27 -31.08 16 13 C 0.23 10.54 1.71 44.24 0.08 10.61 16 14 H 0.08 3.77 4.73 -2.39 -0.01 3.75 16 15 C -0.54 -27.48 8.52 25.60 0.22 -27.26 16 16 H 0.07 3.77 8.00 -2.91 -0.02 3.75 16 17 C 0.06 3.39 5.47 84.65 0.46 3.85 16 18 N -0.90 -49.65 13.96 21.45 0.30 -49.35 16 19 Si 0.92 41.91 26.99 68.60 1.85 43.77 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.26 -12.15 6.82 99.48 0.68 -11.47 16 23 C 0.44 19.42 2.83 71.98 0.20 19.62 16 24 F -0.19 -7.90 16.93 44.97 0.76 -7.14 16 25 F -0.19 -8.44 16.89 44.97 0.76 -7.68 16 26 F -0.19 -8.30 15.83 44.97 0.71 -7.59 16 27 N -0.29 -7.29 12.05 -47.24 -0.57 -7.86 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.31 7.50 -2.39 -0.02 1.29 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.10 2.40 7.50 -2.39 -0.02 2.38 16 38 H 0.41 10.30 8.48 -92.71 -0.79 9.51 16 39 H 0.41 14.46 8.61 -92.71 -0.80 13.66 16 40 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -67.80 358.09 2.67 -65.13 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.49 Total: 22.44 kcal Atomic # 6 Polarization: 37.51 SS G_CDS: 5.66 Total: 43.17 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -6.52 Total: -123.85 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.06 Total: -28.24 kcal Atomic # 9 Polarization: -24.64 SS G_CDS: 2.23 Total: -22.41 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.85 Total: 43.77 kcal Total: -67.80 2.67 -65.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932899175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.407 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds