Wall clock time and date at job start Tue Mar 31 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28594 * 124.62006 * 2 1 4 4 C 1.31384 * 108.72176 * 179.97438 * 3 2 1 5 5 C 1.39673 * 105.89803 * 359.97438 * 4 3 2 6 6 C 1.50696 * 127.05203 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47283 * 125.00043 * 6 5 4 8 8 C 1.52995 * 109.47369 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47264 * 180.02562 * 8 7 6 10 10 C 1.34784 * 120.00243 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00015 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00061 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99910 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47452 * 324.99846 * 13 12 10 15 15 C 1.50698 * 109.46840 * 204.99595 * 13 12 10 16 16 H 1.07993 * 120.00472 * 359.97438 * 15 13 12 17 17 C 1.37884 * 119.99909 * 179.97438 * 15 13 12 18 18 N 1.31522 * 119.99817 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00071 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46971 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46790 * 119.99973 * 19 17 15 22 22 H 1.48501 * 109.47046 * 239.99648 * 19 17 15 23 23 C 1.53006 * 109.46998 * 84.99768 * 13 12 10 24 24 F 1.39897 * 109.47129 * 60.00160 * 23 13 12 25 25 F 1.39900 * 109.46764 * 180.02562 * 23 13 12 26 26 F 1.39895 * 109.46931 * 299.99881 * 23 13 12 27 27 N 1.28607 * 124.61780 * 180.23664 * 2 1 3 28 28 H 1.09002 * 109.46826 * 90.03035 * 1 2 3 29 29 H 1.08998 * 109.47404 * 210.02283 * 1 2 3 30 30 H 1.08994 * 109.47547 * 330.03034 * 1 2 3 31 31 H 1.07994 * 127.05190 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47056 * 5.00546 * 6 5 4 33 33 H 1.08991 * 109.47597 * 245.00211 * 6 5 4 34 34 H 1.09001 * 109.47062 * 60.00003 * 7 6 5 35 35 H 1.08997 * 109.47315 * 300.00785 * 7 6 5 36 36 H 1.08996 * 109.47213 * 60.00355 * 8 7 6 37 37 H 1.09003 * 109.47027 * 300.00257 * 8 7 6 38 38 H 0.97001 * 120.00244 * 0.02562 * 9 8 7 39 39 H 0.97003 * 120.00095 * 359.97438 * 12 10 9 40 40 H 0.96991 * 120.00052 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0582 0.0000 4 6 3.4592 0.6983 0.0006 5 6 3.4592 -0.6984 0.0015 6 6 4.6618 -1.6064 0.0019 7 6 4.5706 -2.5733 1.1842 8 6 5.7919 -3.4947 1.1850 9 7 5.7042 -4.4208 2.3167 10 6 6.6767 -5.3320 2.5188 11 8 7.6269 -5.3850 1.7622 12 7 6.5957 -6.1843 3.5596 13 6 7.6530 -7.1743 3.7797 14 1 8.0337 -7.5190 2.8183 15 6 7.0936 -8.3443 4.5472 16 1 6.0547 -8.3498 4.8421 17 6 7.9083 -9.4079 4.8731 18 7 9.1737 -9.4011 4.5145 19 14 7.2149 -10.8586 5.8240 20 1 5.7757 -10.6239 6.1047 21 1 7.3660 -12.0965 5.0178 22 1 7.9516 -11.0088 7.1046 23 6 8.7905 -6.5363 4.5797 24 9 8.3018 -6.0939 5.8136 25 9 9.8004 -7.4816 4.7893 26 9 9.3097 -5.4502 3.8671 27 7 2.1956 -1.0584 -0.0044 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5133 31 1 4.3211 1.3490 0.0011 32 1 5.5686 -1.0082 0.0910 33 1 4.6900 -2.1725 -0.9290 34 1 3.6637 -3.1714 1.0952 35 1 4.5424 -2.0071 2.1152 36 1 6.6985 -2.8963 1.2743 37 1 5.8205 -4.0609 0.2540 38 1 4.9460 -4.3789 2.9201 39 1 5.8378 -6.1418 4.1635 40 1 9.7469 -10.1490 4.7440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932900121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:11 Heat of formation + Delta-G solvation = -63.397144 kcal Electronic energy + Delta-G solvation = -28624.259369 eV Core-core repulsion = 23869.659445 eV Total energy + Delta-G solvation = -4754.599924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.27785 -45.93024 -45.54827 -43.82069 -39.30062 -36.30742 -34.71706 -34.13591 -33.08365 -32.54176 -31.73137 -28.84474 -27.78032 -25.69875 -24.50086 -22.65520 -22.43898 -21.41752 -20.80297 -20.04075 -18.21834 -17.59375 -17.12304 -16.82725 -16.73365 -16.54101 -16.07705 -15.66174 -15.26812 -15.01174 -14.78828 -14.37375 -14.03175 -13.66380 -13.56058 -13.24910 -13.17566 -12.85495 -12.75985 -12.61017 -12.37161 -12.32411 -12.22297 -11.92130 -11.76207 -11.68936 -11.43916 -11.13674 -11.04698 -10.95360 -10.83749 -10.72236 -10.48905 -10.36964 -9.60961 -9.52109 -9.38069 -8.74514 -8.67810 -8.10554 -6.20709 -4.44096 1.52089 2.02544 2.14199 3.19273 3.22272 3.27894 3.32607 3.77750 3.85040 4.21306 4.39219 4.57981 4.61344 4.63604 4.79442 4.84594 4.85234 4.96065 4.96771 5.13585 5.23267 5.42508 5.51959 5.70283 5.81968 5.89848 5.94375 5.94500 6.09362 6.14028 6.28253 6.38902 6.86031 6.90032 7.26669 7.42183 7.65956 7.73942 8.04431 8.53355 8.71868 9.19046 9.30858 10.71022 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.002130 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.104323 B =13145.014067 C =13858.517709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.162 5.162 3 N -0.293 5.293 4 C -0.023 4.023 5 C 0.008 3.992 6 C -0.026 4.026 7 C -0.124 4.124 8 C 0.141 3.859 9 N -0.754 5.754 10 C 0.698 3.302 11 O -0.585 6.585 12 N -0.728 5.728 13 C 0.262 3.738 14 H 0.085 0.915 15 C -0.550 4.550 16 H 0.077 0.923 17 C 0.064 3.936 18 N -0.839 5.839 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.416 3.584 24 F -0.211 7.211 25 F -0.138 7.138 26 F -0.216 7.216 27 N -0.285 5.285 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.198 0.802 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.392 0.608 39 H 0.394 0.606 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.452 16.302 -6.811 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.063 5.063 3 N -0.134 5.134 4 C -0.206 4.206 5 C -0.155 4.155 6 C -0.066 4.066 7 C -0.163 4.163 8 C 0.016 3.984 9 N -0.411 5.411 10 C 0.398 3.602 11 O -0.462 6.462 12 N -0.380 5.380 13 C 0.156 3.844 14 H 0.103 0.897 15 C -0.588 4.588 16 H 0.095 0.905 17 C -0.145 4.145 18 N -0.473 5.473 19 Si 0.742 3.258 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.359 3.641 24 F -0.193 7.193 25 F -0.119 7.119 26 F -0.198 7.198 27 N -0.127 5.127 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.214 0.786 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.227 0.773 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.754 16.148 -7.519 23.130 hybrid contribution 0.076 -0.429 1.278 1.350 sum -14.678 15.719 -6.242 22.394 Atomic orbital electron populations 1.22103 0.70340 1.05827 1.04860 1.47910 1.08856 0.99392 1.50144 1.74032 1.04068 1.16202 1.19144 1.24702 0.94439 0.94801 1.06628 1.23212 0.92687 0.94126 1.05458 1.19820 0.91836 0.95261 0.99709 1.21734 0.98767 0.97320 0.98479 1.21073 0.97514 0.90580 0.89205 1.45075 1.25767 1.37696 1.32599 1.16072 0.82642 0.79347 0.82164 1.90912 1.33409 1.73740 1.48138 1.45267 1.26858 1.36580 1.29321 1.19591 0.82305 0.84914 0.97618 0.89741 1.20919 0.97792 1.01195 1.38844 0.90481 1.25091 0.94640 0.98953 0.95803 1.70419 1.04365 1.29727 1.42770 0.86159 0.79169 0.81196 0.79281 1.19454 1.20589 1.20603 1.23179 0.86731 0.75799 0.78366 1.92979 1.88446 1.90379 1.47454 1.93399 1.62437 1.61241 1.94819 1.93070 1.88996 1.59027 1.78743 1.74023 1.03683 1.15491 1.19544 0.89366 0.87904 0.88024 0.78556 0.89047 0.89518 0.90700 0.91284 0.91677 0.91700 0.77483 0.77295 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.49 11.57 59.85 0.69 1.18 16 2 N -0.16 -1.53 4.35 -16.64 -0.07 -1.60 16 3 N -0.29 -2.99 12.05 30.67 0.37 -2.62 16 4 C -0.02 -0.21 12.15 -17.21 -0.21 -0.42 16 5 C 0.01 0.08 6.61 -82.25 -0.54 -0.47 16 6 C -0.03 -0.21 5.81 -27.88 -0.16 -0.37 16 7 C -0.12 -1.13 5.31 -26.73 -0.14 -1.27 16 8 C 0.14 1.72 5.67 -4.05 -0.02 1.70 16 9 N -0.75 -11.03 5.56 -65.23 -0.36 -11.39 16 10 C 0.70 14.12 8.10 -86.91 -0.70 13.41 16 11 O -0.58 -14.23 14.92 5.29 0.08 -14.15 16 12 N -0.73 -15.11 4.99 -59.81 -0.30 -15.41 16 13 C 0.26 6.61 2.21 -69.08 -0.15 6.46 16 14 H 0.09 2.40 7.58 -51.93 -0.39 2.00 16 15 C -0.55 -14.12 8.46 -34.44 -0.29 -14.41 16 16 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16 17 C 0.06 1.67 5.20 -17.81 -0.09 1.58 16 18 N -0.84 -23.18 9.50 55.43 0.53 -22.66 16 19 Si 0.92 20.17 29.54 -169.99 -5.02 15.15 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.42 10.85 2.81 37.16 0.10 10.95 16 24 F -0.21 -5.27 16.94 2.25 0.04 -5.23 16 25 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 26 F -0.22 -5.64 15.67 2.25 0.04 -5.61 16 27 N -0.28 -3.04 12.05 33.71 0.41 -2.64 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.20 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.39 4.60 8.49 -40.82 -0.35 4.25 16 39 H 0.39 7.00 8.55 -40.82 -0.35 6.65 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -34.94 355.70 -5.29 -40.23 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.86 Total: 6.07 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: -1.52 Total: 18.34 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.57 Total: -56.32 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.08 Total: -14.15 kcal Atomic # 9 Polarization: -14.78 SS G_CDS: 0.10 Total: -14.68 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.94 -5.29 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932900121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.168 kcal (2) G-P(sol) polarization free energy of solvation -34.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds