Wall clock time and date at job start Tue Mar 31 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28594 * 124.62006 * 2 1 4 4 C 1.31384 * 108.72176 * 179.97438 * 3 2 1 5 5 C 1.39673 * 105.89803 * 359.97438 * 4 3 2 6 6 C 1.50696 * 127.05203 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47283 * 125.00043 * 6 5 4 8 8 C 1.52995 * 109.47369 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47264 * 180.02562 * 8 7 6 10 10 C 1.34784 * 120.00243 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00015 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00061 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99910 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47452 * 324.99846 * 13 12 10 15 15 C 1.50698 * 109.46840 * 204.99595 * 13 12 10 16 16 H 1.07993 * 120.00472 * 359.97438 * 15 13 12 17 17 C 1.37884 * 119.99909 * 179.97438 * 15 13 12 18 18 N 1.31522 * 119.99817 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00071 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46971 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46790 * 119.99973 * 19 17 15 22 22 H 1.48501 * 109.47046 * 239.99648 * 19 17 15 23 23 C 1.53006 * 109.46998 * 84.99768 * 13 12 10 24 24 F 1.39897 * 109.47129 * 60.00160 * 23 13 12 25 25 F 1.39900 * 109.46764 * 180.02562 * 23 13 12 26 26 F 1.39895 * 109.46931 * 299.99881 * 23 13 12 27 27 N 1.28607 * 124.61780 * 180.23664 * 2 1 3 28 28 H 1.09002 * 109.46826 * 90.03035 * 1 2 3 29 29 H 1.08998 * 109.47404 * 210.02283 * 1 2 3 30 30 H 1.08994 * 109.47547 * 330.03034 * 1 2 3 31 31 H 1.07994 * 127.05190 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47056 * 5.00546 * 6 5 4 33 33 H 1.08991 * 109.47597 * 245.00211 * 6 5 4 34 34 H 1.09001 * 109.47062 * 60.00003 * 7 6 5 35 35 H 1.08997 * 109.47315 * 300.00785 * 7 6 5 36 36 H 1.08996 * 109.47213 * 60.00355 * 8 7 6 37 37 H 1.09003 * 109.47027 * 300.00257 * 8 7 6 38 38 H 0.97001 * 120.00244 * 0.02562 * 9 8 7 39 39 H 0.97003 * 120.00095 * 359.97438 * 12 10 9 40 40 H 0.96991 * 120.00052 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0582 0.0000 4 6 3.4592 0.6983 0.0006 5 6 3.4592 -0.6984 0.0015 6 6 4.6618 -1.6064 0.0019 7 6 4.5706 -2.5733 1.1842 8 6 5.7919 -3.4947 1.1850 9 7 5.7042 -4.4208 2.3167 10 6 6.6767 -5.3320 2.5188 11 8 7.6269 -5.3850 1.7622 12 7 6.5957 -6.1843 3.5596 13 6 7.6530 -7.1743 3.7797 14 1 8.0337 -7.5190 2.8183 15 6 7.0936 -8.3443 4.5472 16 1 6.0547 -8.3498 4.8421 17 6 7.9083 -9.4079 4.8731 18 7 9.1737 -9.4011 4.5145 19 14 7.2149 -10.8586 5.8240 20 1 5.7757 -10.6239 6.1047 21 1 7.3660 -12.0965 5.0178 22 1 7.9516 -11.0088 7.1046 23 6 8.7905 -6.5363 4.5797 24 9 8.3018 -6.0939 5.8136 25 9 9.8004 -7.4816 4.7893 26 9 9.3097 -5.4502 3.8671 27 7 2.1956 -1.0584 -0.0044 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5133 31 1 4.3211 1.3490 0.0011 32 1 5.5686 -1.0082 0.0910 33 1 4.6900 -2.1725 -0.9290 34 1 3.6637 -3.1714 1.0952 35 1 4.5424 -2.0071 2.1152 36 1 6.6985 -2.8963 1.2743 37 1 5.8205 -4.0609 0.2540 38 1 4.9460 -4.3789 2.9201 39 1 5.8378 -6.1418 4.1635 40 1 9.7469 -10.1490 4.7440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932900121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:10 Heat of formation + Delta-G solvation = -89.374531 kcal Electronic energy + Delta-G solvation = -28625.385833 eV Core-core repulsion = 23869.659445 eV Total energy + Delta-G solvation = -4755.726388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.37330 -48.00625 -47.68725 -44.47163 -40.88487 -37.35709 -36.34305 -35.20569 -34.43409 -33.76507 -32.64880 -30.30971 -28.79013 -26.66975 -26.41681 -23.75412 -23.25266 -22.89174 -21.91941 -21.33460 -19.87672 -18.84122 -18.72795 -18.51809 -18.20018 -17.82269 -17.69682 -16.98191 -16.60686 -16.47520 -15.74846 -15.58047 -15.33828 -15.06610 -14.91178 -14.57880 -14.49890 -14.41575 -14.26066 -14.07572 -13.99074 -13.84536 -13.66398 -13.55055 -13.28497 -13.01561 -12.71840 -12.63721 -12.45424 -12.24103 -12.17737 -11.76672 -11.67021 -11.52189 -11.24935 -11.17781 -10.67754 -10.26183 -10.02342 -9.71426 -8.19052 -6.49496 0.85055 1.46096 1.47769 1.48762 1.55335 1.61370 1.82064 2.18979 2.38965 2.60388 2.96833 3.20803 3.36538 3.73934 3.83138 3.91669 4.06779 4.16906 4.24016 4.27634 4.31317 4.43926 4.51409 4.57776 4.72402 4.76231 4.87541 4.94867 5.08322 5.25427 5.31655 5.40706 5.47300 5.55226 5.62974 5.68351 5.80971 6.18435 6.56129 7.19172 7.24832 7.38099 7.70522 8.74040 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.002130 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.104323 B =13145.014067 C =13858.517709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.166 5.166 3 N -0.314 5.314 4 C -0.028 4.028 5 C -0.002 4.002 6 C -0.023 4.023 7 C -0.107 4.107 8 C 0.140 3.860 9 N -0.733 5.733 10 C 0.693 3.307 11 O -0.629 6.629 12 N -0.722 5.722 13 C 0.270 3.730 14 H 0.046 0.954 15 C -0.559 4.559 16 H 0.092 0.908 17 C 0.013 3.987 18 N -0.875 5.875 19 Si 0.984 3.016 20 H -0.255 1.255 21 H -0.278 1.278 22 H -0.281 1.281 23 C 0.413 3.587 24 F -0.204 7.204 25 F -0.151 7.151 26 F -0.218 7.218 27 N -0.308 5.308 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.224 0.776 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.410 0.590 39 H 0.410 0.590 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.343 16.887 -6.241 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.068 5.068 3 N -0.156 5.156 4 C -0.210 4.210 5 C -0.164 4.164 6 C -0.062 4.062 7 C -0.145 4.145 8 C 0.016 3.984 9 N -0.390 5.390 10 C 0.393 3.607 11 O -0.510 6.510 12 N -0.376 5.376 13 C 0.162 3.838 14 H 0.064 0.936 15 C -0.596 4.596 16 H 0.110 0.890 17 C -0.192 4.192 18 N -0.509 5.509 19 Si 0.808 3.192 20 H -0.179 1.179 21 H -0.204 1.204 22 H -0.207 1.207 23 C 0.356 3.644 24 F -0.185 7.185 25 F -0.133 7.133 26 F -0.200 7.200 27 N -0.152 5.152 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.240 0.760 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.246 0.754 39 H 0.246 0.754 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.729 16.784 -6.942 24.693 hybrid contribution 0.629 -0.527 1.051 1.334 sum -16.100 16.257 -5.891 23.626 Atomic orbital electron populations 1.22484 0.68325 1.07150 1.06235 1.48371 1.10076 0.98863 1.49502 1.74012 1.04803 1.16855 1.19929 1.25204 0.94915 0.95040 1.05807 1.23441 0.92720 0.94679 1.05602 1.19844 0.92211 0.95085 0.99106 1.21567 0.96758 0.96770 0.99436 1.21240 0.98991 0.90329 0.87866 1.44948 1.24697 1.36179 1.33171 1.16278 0.83087 0.79832 0.81484 1.90882 1.35562 1.75015 1.49547 1.45007 1.26449 1.36083 1.30082 1.19167 0.83034 0.86025 0.95565 0.93645 1.21251 0.98484 1.01281 1.38574 0.88987 1.26019 0.94846 1.01710 0.96635 1.70547 1.05750 1.30658 1.43953 0.85096 0.79079 0.77524 0.77510 1.17863 1.20359 1.20722 1.23344 0.86727 0.75584 0.78732 1.92979 1.88290 1.90270 1.47002 1.93372 1.63110 1.61842 1.94933 1.93060 1.89086 1.59065 1.78833 1.73982 1.04448 1.16417 1.20308 0.87968 0.86829 0.86529 0.75974 0.87045 0.89281 0.90984 0.90706 0.92073 0.92373 0.75445 0.75418 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 11.57 127.77 1.48 2.21 16 2 N -0.17 -2.93 4.35 -206.56 -0.90 -3.83 16 3 N -0.31 -6.01 12.05 -56.87 -0.69 -6.70 16 4 C -0.03 -0.45 12.15 85.11 1.03 0.58 16 5 C 0.00 -0.04 6.61 42.97 0.28 0.25 16 6 C -0.02 -0.31 5.81 29.85 0.17 -0.14 16 7 C -0.11 -1.72 5.31 30.59 0.16 -1.56 16 8 C 0.14 3.22 5.67 86.38 0.49 3.71 16 9 N -0.73 -20.40 5.56 -478.55 -2.66 -23.06 16 10 C 0.69 27.79 8.10 179.05 1.45 29.24 16 11 O -0.63 -31.07 14.92 -3.98 -0.06 -31.13 16 12 N -0.72 -29.59 4.99 -461.41 -2.30 -31.90 16 13 C 0.27 13.74 2.21 44.25 0.10 13.84 16 14 H 0.05 2.68 7.58 -2.39 -0.02 2.66 16 15 C -0.56 -28.34 8.46 25.60 0.22 -28.12 16 16 H 0.09 4.29 7.74 -2.91 -0.02 4.26 16 17 C 0.01 0.68 5.20 84.66 0.44 1.12 16 18 N -0.87 -48.83 9.50 21.45 0.20 -48.63 16 19 Si 0.98 40.61 29.54 68.60 2.03 42.64 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 23 C 0.41 21.71 2.81 71.98 0.20 21.91 16 24 F -0.20 -10.06 16.94 44.97 0.76 -9.30 16 25 F -0.15 -8.64 12.91 44.97 0.58 -8.06 16 26 F -0.22 -11.52 15.67 44.97 0.70 -10.82 16 27 N -0.31 -6.20 12.05 -47.25 -0.57 -6.77 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.22 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.41 8.68 8.49 -92.71 -0.79 7.89 16 39 H 0.41 13.91 8.55 -92.71 -0.79 13.12 16 40 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -75.48 355.70 2.66 -72.82 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.47 Total: 21.69 kcal Atomic # 6 Polarization: 37.00 SS G_CDS: 6.03 Total: 43.03 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -6.91 Total: -120.88 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.06 Total: -31.13 kcal Atomic # 9 Polarization: -30.23 SS G_CDS: 2.05 Total: -28.18 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -75.48 2.66 -72.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932900121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.554 kcal (2) G-P(sol) polarization free energy of solvation -75.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds