Wall clock time and date at job start Tue Mar 31 2020 18:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21277 * 119.99474 * 2 1 4 4 N 1.34776 * 120.00091 * 179.97438 * 2 1 3 5 5 C 1.39292 * 119.99673 * 185.52882 * 4 2 1 6 6 C 1.38773 * 120.15649 * 24.85603 * 5 4 2 7 7 C 1.38097 * 120.14616 * 179.97438 * 6 5 4 8 8 C 1.38433 * 120.44557 * 0.04569 * 7 6 5 9 9 C 1.38146 * 120.30226 * 359.95932 * 8 7 6 10 10 F 1.35100 * 120.07196 * 180.02562 * 9 8 7 11 11 C 1.39941 * 119.85107 * 0.29678 * 9 8 7 12 12 C 1.47370 * 120.22057 * 179.70325 * 11 9 8 13 13 O 1.21615 * 119.99854 * 90.00081 * 12 11 9 14 14 N 1.34776 * 119.99985 * 269.99507 * 12 11 9 15 15 C 1.47015 * 125.64665 * 0.03124 * 14 12 11 16 16 C 1.54323 * 107.27140 * 181.02029 * 15 14 12 17 17 C 1.55161 * 102.94281 * 22.18780 * 16 15 14 18 18 H 1.09004 * 110.99983 * 82.57261 * 17 16 15 19 19 N 1.46497 * 111.00547 * 206.42582 * 17 16 15 20 20 C 1.36938 * 119.99909 * 205.00201 * 19 17 16 21 21 H 1.07994 * 120.00135 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99714 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00431 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99585 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47282 * 60.00048 * 24 22 20 26 26 H 1.48502 * 109.47119 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47270 * 299.99659 * 24 22 20 28 28 C 1.47417 * 125.64894 * 179.71501 * 14 12 11 29 29 H 1.08994 * 109.47605 * 270.00343 * 1 2 3 30 30 H 1.08995 * 109.47471 * 30.00975 * 1 2 3 31 31 H 1.09005 * 109.46788 * 150.00345 * 1 2 3 32 32 H 0.96998 * 119.99936 * 5.52647 * 4 2 1 33 33 H 1.08002 * 119.92637 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.77940 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.84598 * 179.97438 * 8 7 6 36 36 H 1.09003 * 109.88232 * 300.43368 * 15 14 12 37 37 H 1.09004 * 109.88634 * 61.44589 * 15 14 12 38 38 H 1.09003 * 110.72309 * 140.55606 * 16 15 14 39 39 H 1.08999 * 110.71930 * 263.65192 * 16 15 14 40 40 H 0.97003 * 119.99765 * 24.99864 * 19 17 16 41 41 H 0.96994 * 120.00403 * 180.02562 * 23 22 20 42 42 H 1.09004 * 110.36813 * 274.75128 * 28 14 12 43 43 H 1.09007 * 110.36741 * 37.06863 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5690 -1.1698 0.1168 6 6 4.2193 -0.1077 0.7289 7 6 5.5955 -0.1108 0.8445 8 6 6.3384 -1.1698 0.3516 9 6 5.7101 -2.2365 -0.2613 10 9 6.4397 -3.2678 -0.7402 11 6 4.3166 -2.2439 -0.3899 12 6 3.6384 -3.3746 -1.0481 13 8 3.2754 -4.3317 -0.3913 14 7 3.4203 -3.3481 -2.3779 15 6 3.8055 -2.2595 -3.2877 16 6 3.3322 -2.6554 -4.7022 17 6 2.2070 -3.6849 -4.4166 18 1 1.2646 -3.1828 -4.1973 19 7 2.0541 -4.6193 -5.5345 20 6 0.8559 -5.2492 -5.7413 21 1 0.0238 -5.0576 -5.0801 22 6 0.7113 -6.1350 -6.8002 23 7 1.7255 -6.3691 -7.6058 24 14 -0.9230 -6.9949 -7.0819 25 1 -1.9823 -5.9806 -7.3153 26 1 -0.8176 -7.8819 -8.2683 27 1 -1.2684 -7.8054 -5.8865 28 6 2.7619 -4.4088 -3.1619 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8898 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6993 -2.0053 -0.0800 33 1 3.6479 0.7228 1.1165 34 1 6.0955 0.7187 1.3224 35 1 7.4142 -1.1620 0.4468 36 1 3.3223 -1.3317 -2.9813 37 1 4.8883 -2.1339 -3.2782 38 1 2.9369 -1.7893 -5.2331 39 1 4.1442 -3.1142 -5.2663 40 1 2.8016 -4.7917 -6.1282 41 1 1.6243 -6.9878 -8.3459 42 1 3.4850 -5.1719 -3.4501 43 1 1.9476 -4.8535 -2.5897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970163809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:03 Heat of formation + Delta-G solvation = -64.076908 kcal Electronic energy + Delta-G solvation = -29203.244281 eV Core-core repulsion = 24970.551659 eV Total energy + Delta-G solvation = -4232.692622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.11981 -41.17104 -39.76294 -38.38948 -37.24507 -35.19432 -34.20987 -31.95136 -31.24471 -30.93170 -29.67231 -28.95552 -27.62234 -24.79442 -23.53397 -23.41792 -22.45603 -20.87895 -20.33043 -19.66760 -18.49991 -17.75141 -17.62182 -17.16224 -16.49313 -16.15920 -15.99204 -15.81676 -15.65075 -15.40838 -14.87301 -14.51309 -14.26834 -14.00005 -13.57508 -13.48146 -13.26336 -13.08337 -12.94487 -12.90542 -12.69271 -12.49542 -12.33163 -12.19336 -11.97346 -11.58375 -11.16589 -10.93422 -10.89021 -10.78904 -10.38524 -10.23161 -10.15175 -10.00629 -9.80228 -9.10401 -9.06191 -8.51054 -8.49168 -7.14355 -5.88711 -3.20110 0.63000 0.83070 2.14559 2.43023 2.58536 2.99201 3.31180 3.38273 3.43192 3.43812 3.95385 4.22958 4.31398 4.49377 4.56779 4.72882 4.81256 4.89240 4.98356 4.98911 5.01829 5.17344 5.21441 5.43728 5.46827 5.53472 5.63140 5.70142 5.71064 5.74356 5.87334 5.98439 6.04850 6.06557 6.17879 6.30215 6.40277 6.48950 6.55864 6.78320 6.89112 7.57393 7.59034 7.60392 8.09722 8.28459 9.40401 9.92841 10.27698 11.33092 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003246 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.358025 B = 8624.351148 C = 9751.811657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.517 3.483 3 O -0.520 6.520 4 N -0.668 5.668 5 C 0.212 3.788 6 C -0.147 4.147 7 C -0.056 4.056 8 C -0.175 4.175 9 C 0.153 3.847 10 F -0.127 7.127 11 C -0.187 4.187 12 C 0.570 3.430 13 O -0.532 6.532 14 N -0.599 5.599 15 C 0.105 3.895 16 C -0.141 4.141 17 C 0.175 3.825 18 H 0.068 0.932 19 N -0.710 5.710 20 C -0.252 4.252 21 H 0.072 0.928 22 C -0.007 4.007 23 N -0.929 5.929 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.079 3.921 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.418 0.582 33 H 0.157 0.843 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.388 0.612 41 H 0.258 0.742 42 H 0.071 0.929 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 15.759 16.920 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.306 3.694 3 O -0.396 6.396 4 N -0.312 5.312 5 C 0.115 3.885 6 C -0.167 4.167 7 C -0.075 4.075 8 C -0.195 4.195 9 C 0.133 3.867 10 F -0.105 7.105 11 C -0.194 4.194 12 C 0.357 3.643 13 O -0.410 6.410 14 N -0.331 5.331 15 C -0.018 4.018 16 C -0.180 4.180 17 C 0.062 3.938 18 H 0.086 0.914 19 N -0.349 5.349 20 C -0.383 4.383 21 H 0.090 0.910 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.046 4.046 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.255 0.745 33 H 0.174 0.826 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.222 0.778 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.716 15.878 17.249 23.914 hybrid contribution -0.532 -1.343 -0.545 1.544 sum 4.184 14.535 16.703 22.534 Atomic orbital electron populations 1.21927 0.89962 1.05947 1.05446 1.21104 0.91200 0.82584 0.74486 1.90695 1.70365 1.31156 1.47378 1.43667 1.05009 1.11002 1.71560 1.17350 0.82972 0.93540 0.94624 1.21407 0.94970 0.99414 1.00887 1.21008 0.93150 0.97097 0.96255 1.21061 1.01379 0.93972 1.03056 1.17301 0.86987 0.85767 0.96686 1.91561 1.76674 1.56595 1.85675 1.19589 0.92779 0.98862 1.08163 1.17518 0.79702 0.85921 0.81204 1.90843 1.51955 1.34499 1.63660 1.48554 1.57409 1.21561 1.05611 1.22021 0.99671 0.89834 0.90270 1.22957 1.00192 1.00724 0.94124 1.21332 0.95275 0.89693 0.87521 0.91376 1.42304 1.13466 1.49479 1.29659 1.19203 0.89887 1.19220 1.09989 0.90971 1.24778 0.97740 0.99963 0.97860 1.69644 1.30143 1.39175 1.18626 0.86244 0.83106 0.79308 0.77362 1.21108 1.21593 1.21062 1.23603 0.96899 0.90456 0.93643 0.88091 0.88021 0.89406 0.74459 0.82613 0.84195 0.84040 0.91837 0.91847 0.90093 0.90305 0.77779 0.93203 0.91108 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.31 36.01 0.37 -0.65 16 2 C 0.52 4.99 7.74 -10.98 -0.09 4.91 16 3 O -0.52 -6.47 14.25 5.56 0.08 -6.39 16 4 N -0.67 -6.95 5.15 -9.69 -0.05 -7.00 16 5 C 0.21 2.53 6.44 -83.49 -0.54 1.99 16 6 C -0.15 -1.53 8.70 -39.44 -0.34 -1.88 16 7 C -0.06 -0.48 10.02 -39.56 -0.40 -0.88 16 8 C -0.18 -1.68 10.00 -39.54 -0.40 -2.08 16 9 C 0.15 1.97 7.29 -38.98 -0.28 1.68 16 10 F -0.13 -1.84 16.83 2.25 0.04 -1.80 16 11 C -0.19 -2.56 4.82 -104.76 -0.51 -3.07 16 12 C 0.57 9.33 5.84 -12.54 -0.07 9.26 16 13 O -0.53 -10.42 17.36 5.26 0.09 -10.33 16 14 N -0.60 -9.49 3.32 -171.67 -0.57 -10.06 16 15 C 0.11 1.44 6.47 -3.07 -0.02 1.42 16 16 C -0.14 -2.11 6.59 -24.89 -0.16 -2.27 16 17 C 0.17 3.22 3.73 -65.66 -0.24 2.98 16 18 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 19 N -0.71 -16.75 5.24 -51.24 -0.27 -17.02 16 20 C -0.25 -6.67 9.96 -15.06 -0.15 -6.82 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 24 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.08 1.44 6.61 -2.42 -0.02 1.43 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.42 4.17 7.90 -40.82 -0.32 3.85 16 33 H 0.16 1.64 5.78 -52.49 -0.30 1.34 16 34 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 40 H 0.39 9.74 7.77 -40.82 -0.32 9.43 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.07 1.42 8.03 -51.92 -0.42 1.00 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -33.07 370.95 -7.88 -40.95 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.55 Total: 10.05 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -2.94 Total: 5.74 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.16 Total: -60.45 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.17 Total: -16.73 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.07 -7.88 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970163809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.128 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds