Wall clock time and date at job start Tue Mar 31 2020 18:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21277 * 119.99474 * 2 1 4 4 N 1.34776 * 120.00091 * 179.97438 * 2 1 3 5 5 C 1.39292 * 119.99673 * 185.52882 * 4 2 1 6 6 C 1.38773 * 120.15649 * 24.85603 * 5 4 2 7 7 C 1.38097 * 120.14616 * 179.97438 * 6 5 4 8 8 C 1.38433 * 120.44557 * 0.04569 * 7 6 5 9 9 C 1.38146 * 120.30226 * 359.95932 * 8 7 6 10 10 F 1.35100 * 120.07196 * 180.02562 * 9 8 7 11 11 C 1.39941 * 119.85107 * 0.29678 * 9 8 7 12 12 C 1.47370 * 120.22057 * 179.70325 * 11 9 8 13 13 O 1.21615 * 119.99854 * 90.00081 * 12 11 9 14 14 N 1.34776 * 119.99985 * 269.99507 * 12 11 9 15 15 C 1.47015 * 125.64665 * 0.03124 * 14 12 11 16 16 C 1.54323 * 107.27140 * 181.02029 * 15 14 12 17 17 C 1.55161 * 102.94281 * 22.18780 * 16 15 14 18 18 H 1.09004 * 110.99983 * 82.57261 * 17 16 15 19 19 N 1.46497 * 111.00547 * 206.42582 * 17 16 15 20 20 C 1.36938 * 119.99909 * 205.00201 * 19 17 16 21 21 H 1.07994 * 120.00135 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99714 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00431 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99585 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47282 * 60.00048 * 24 22 20 26 26 H 1.48502 * 109.47119 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47270 * 299.99659 * 24 22 20 28 28 C 1.47417 * 125.64894 * 179.71501 * 14 12 11 29 29 H 1.08994 * 109.47605 * 270.00343 * 1 2 3 30 30 H 1.08995 * 109.47471 * 30.00975 * 1 2 3 31 31 H 1.09005 * 109.46788 * 150.00345 * 1 2 3 32 32 H 0.96998 * 119.99936 * 5.52647 * 4 2 1 33 33 H 1.08002 * 119.92637 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.77940 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.84598 * 179.97438 * 8 7 6 36 36 H 1.09003 * 109.88232 * 300.43368 * 15 14 12 37 37 H 1.09004 * 109.88634 * 61.44589 * 15 14 12 38 38 H 1.09003 * 110.72309 * 140.55606 * 16 15 14 39 39 H 1.08999 * 110.71930 * 263.65192 * 16 15 14 40 40 H 0.97003 * 119.99765 * 24.99864 * 19 17 16 41 41 H 0.96994 * 120.00403 * 180.02562 * 23 22 20 42 42 H 1.09004 * 110.36813 * 274.75128 * 28 14 12 43 43 H 1.09007 * 110.36741 * 37.06863 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5690 -1.1698 0.1168 6 6 4.2193 -0.1077 0.7289 7 6 5.5955 -0.1108 0.8445 8 6 6.3384 -1.1698 0.3516 9 6 5.7101 -2.2365 -0.2613 10 9 6.4397 -3.2678 -0.7402 11 6 4.3166 -2.2439 -0.3899 12 6 3.6384 -3.3746 -1.0481 13 8 3.2754 -4.3317 -0.3913 14 7 3.4203 -3.3481 -2.3779 15 6 3.8055 -2.2595 -3.2877 16 6 3.3322 -2.6554 -4.7022 17 6 2.2070 -3.6849 -4.4166 18 1 1.2646 -3.1828 -4.1973 19 7 2.0541 -4.6193 -5.5345 20 6 0.8559 -5.2492 -5.7413 21 1 0.0238 -5.0576 -5.0801 22 6 0.7113 -6.1350 -6.8002 23 7 1.7255 -6.3691 -7.6058 24 14 -0.9230 -6.9949 -7.0819 25 1 -1.9823 -5.9806 -7.3153 26 1 -0.8176 -7.8819 -8.2683 27 1 -1.2684 -7.8054 -5.8865 28 6 2.7619 -4.4088 -3.1619 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8898 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6993 -2.0053 -0.0800 33 1 3.6479 0.7228 1.1165 34 1 6.0955 0.7187 1.3224 35 1 7.4142 -1.1620 0.4468 36 1 3.3223 -1.3317 -2.9813 37 1 4.8883 -2.1339 -3.2782 38 1 2.9369 -1.7893 -5.2331 39 1 4.1442 -3.1142 -5.2663 40 1 2.8016 -4.7917 -6.1282 41 1 1.6243 -6.9878 -8.3459 42 1 3.4850 -5.1719 -3.4501 43 1 1.9476 -4.8535 -2.5897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970163809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:02 Heat of formation + Delta-G solvation = -86.401243 kcal Electronic energy + Delta-G solvation = -29204.212337 eV Core-core repulsion = 24970.551659 eV Total energy + Delta-G solvation = -4233.660678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.13515 -42.08260 -40.93415 -39.35089 -38.60234 -36.02305 -35.97639 -33.52397 -32.26190 -31.81252 -31.12174 -29.68730 -29.11356 -26.27658 -24.96346 -24.30284 -23.67264 -21.81903 -21.65645 -20.86492 -19.52127 -19.23897 -18.57893 -18.55293 -17.49850 -17.44885 -16.91522 -16.84413 -16.72767 -16.42156 -16.19252 -15.80044 -15.48853 -15.23146 -14.95555 -14.86771 -14.39098 -14.37643 -13.93437 -13.82581 -13.77055 -13.49611 -13.24961 -13.18341 -12.96749 -12.92602 -12.83744 -12.60494 -12.42862 -12.15625 -11.80996 -11.75395 -11.68521 -11.30712 -11.00872 -10.99323 -10.00747 -9.87252 -9.33925 -9.10893 -7.97843 -5.28598 -0.22841 -0.00952 1.17550 1.41578 1.48302 1.50779 1.56528 1.75709 1.81598 2.46388 2.54816 3.06887 3.17317 3.35712 3.54973 3.59557 3.80782 3.84713 3.91410 3.99482 4.15017 4.20265 4.22608 4.27276 4.44525 4.46148 4.57382 4.59891 4.69993 4.76570 4.86501 4.91784 4.99401 5.05115 5.06971 5.11332 5.19788 5.27906 5.28785 5.50519 5.75460 6.11898 6.22752 6.29262 6.79429 6.85089 7.30488 8.00697 8.24791 9.24724 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003246 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.358025 B = 8624.351148 C = 9751.811657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.516 3.484 3 O -0.549 6.549 4 N -0.669 5.669 5 C 0.205 3.795 6 C -0.149 4.149 7 C -0.038 4.038 8 C -0.163 4.163 9 C 0.131 3.869 10 F -0.144 7.144 11 C -0.208 4.208 12 C 0.574 3.426 13 O -0.574 6.574 14 N -0.597 5.597 15 C 0.112 3.888 16 C -0.129 4.129 17 C 0.172 3.828 18 H 0.075 0.925 19 N -0.722 5.722 20 C -0.250 4.250 21 H 0.080 0.920 22 C -0.068 4.068 23 N -0.966 5.966 24 Si 0.971 3.029 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.281 1.281 28 C 0.090 3.910 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.418 0.582 33 H 0.158 0.842 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.047 0.953 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 18.303 18.331 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.307 3.693 3 O -0.427 6.427 4 N -0.313 5.313 5 C 0.108 3.892 6 C -0.170 4.170 7 C -0.056 4.056 8 C -0.182 4.182 9 C 0.110 3.890 10 F -0.122 7.122 11 C -0.214 4.214 12 C 0.362 3.638 13 O -0.454 6.454 14 N -0.328 5.328 15 C -0.010 4.010 16 C -0.168 4.168 17 C 0.061 3.939 18 H 0.093 0.907 19 N -0.360 5.360 20 C -0.381 4.381 21 H 0.097 0.903 22 C -0.261 4.261 23 N -0.616 5.616 24 Si 0.800 3.200 25 H -0.199 1.199 26 H -0.223 1.223 27 H -0.207 1.207 28 C -0.036 4.036 29 H 0.139 0.861 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.255 0.745 33 H 0.176 0.824 34 H 0.198 0.802 35 H 0.188 0.812 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.210 0.790 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.654 18.471 18.695 26.690 hybrid contribution -0.463 -2.041 -0.860 2.263 sum 4.192 16.430 17.835 24.609 Atomic orbital electron populations 1.21989 0.87002 1.06705 1.06987 1.21766 0.92493 0.81747 0.73279 1.90675 1.71230 1.31947 1.48828 1.43799 1.04666 1.11376 1.71458 1.17530 0.83619 0.93417 0.94655 1.21587 0.95975 0.98813 1.00593 1.21471 0.92333 0.97432 0.94384 1.21390 1.02841 0.92664 1.01320 1.17682 0.86753 0.86493 0.98052 1.91517 1.76954 1.57620 1.86148 1.19399 0.93284 0.98702 1.10047 1.17951 0.78831 0.86163 0.80888 1.90807 1.53664 1.36397 1.64520 1.48543 1.57051 1.21353 1.05887 1.22091 1.00623 0.89568 0.88712 1.22869 0.98569 1.00150 0.95168 1.21475 0.96937 0.89562 0.85944 0.90735 1.42437 1.12359 1.50357 1.30891 1.19605 0.90879 1.18350 1.09268 0.90254 1.25550 1.00864 1.01418 0.98287 1.69795 1.32066 1.40335 1.19377 0.85252 0.79701 0.78245 0.76793 1.19932 1.22341 1.20680 1.23185 0.95977 0.90656 0.93793 0.86065 0.87411 0.88412 0.74485 0.82435 0.80221 0.81202 0.89910 0.90593 0.88045 0.90805 0.79012 0.93888 0.93459 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.31 71.24 0.73 -0.88 16 2 C 0.52 9.13 7.74 87.66 0.68 9.81 16 3 O -0.55 -12.73 14.25 -3.02 -0.04 -12.77 16 4 N -0.67 -13.20 5.15 -302.95 -1.56 -14.76 16 5 C 0.21 4.62 6.44 38.59 0.25 4.87 16 6 C -0.15 -2.76 8.70 22.36 0.19 -2.57 16 7 C -0.04 -0.51 10.02 22.28 0.22 -0.29 16 8 C -0.16 -2.63 10.00 22.29 0.22 -2.40 16 9 C 0.13 3.19 7.29 22.66 0.17 3.36 16 10 F -0.14 -4.14 16.83 44.97 0.76 -3.39 16 11 C -0.21 -5.54 4.82 -19.95 -0.10 -5.64 16 12 C 0.57 18.97 5.84 86.65 0.51 19.48 16 13 O -0.57 -23.25 17.36 -4.08 -0.07 -23.32 16 14 N -0.60 -18.93 3.32 -815.30 -2.71 -21.64 16 15 C 0.11 2.90 6.47 86.73 0.56 3.46 16 16 C -0.13 -3.69 6.59 31.78 0.21 -3.49 16 17 C 0.17 6.32 3.73 46.46 0.17 6.49 16 18 H 0.07 2.67 8.09 -2.38 -0.02 2.65 16 19 N -0.72 -34.51 5.24 -316.02 -1.66 -36.17 16 20 C -0.25 -13.26 9.96 84.03 0.84 -12.42 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 22 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 23 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 24 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 C 0.09 3.36 6.61 86.93 0.57 3.94 16 29 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.42 8.16 7.90 -92.71 -0.73 7.43 16 33 H 0.16 2.94 5.78 -2.91 -0.02 2.92 16 34 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 35 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.07 2.22 8.01 -2.39 -0.02 2.20 16 40 H 0.38 19.42 7.77 -92.71 -0.72 18.70 16 41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.06 2.34 8.03 -2.38 -0.02 2.33 16 Total: -1.00 -73.57 370.95 2.34 -71.23 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.38 Total: 30.81 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 5.70 Total: 20.38 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -5.64 Total: -129.88 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.11 Total: -36.09 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.76 Total: -3.39 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -73.57 2.34 -71.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970163809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.175 kcal (2) G-P(sol) polarization free energy of solvation -73.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds