Wall clock time and date at job start Tue Mar 31 2020 18:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35727 * 117.00063 * 2 1 4 4 C 1.39358 * 120.36129 * 0.02562 * 3 2 1 5 5 N 1.31285 * 120.88142 * 180.02562 * 4 3 2 6 6 C 1.32881 * 121.72147 * 359.97438 * 5 4 3 7 7 C 1.47761 * 119.69016 * 180.02562 * 6 5 4 8 8 O 1.21567 * 119.99972 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99972 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00130 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47341 * 179.97438 * 10 9 7 12 12 H 1.08999 * 115.51223 * 330.41018 * 11 10 9 13 13 C 1.52997 * 117.44560 * 185.00176 * 11 10 9 14 14 H 1.09006 * 119.53667 * 4.11309 * 13 11 10 15 15 C 1.54384 * 118.12726 * 160.80715 * 13 11 10 16 16 N 1.48151 * 104.61683 * 87.18572 * 15 13 11 17 17 C 1.36937 * 127.83671 * 140.39658 * 16 15 13 18 18 H 1.07991 * 120.00106 * 195.60007 * 17 16 15 19 19 C 1.38815 * 119.99952 * 15.59371 * 17 16 15 20 20 N 1.31626 * 119.99944 * 9.10327 * 19 17 16 21 21 Si 1.86800 * 120.00202 * 189.09438 * 19 17 16 22 22 H 1.48502 * 109.47011 * 90.00184 * 21 19 17 23 23 H 1.48499 * 109.47121 * 210.00593 * 21 19 17 24 24 H 1.48504 * 109.47014 * 330.00573 * 21 19 17 25 25 C 1.48142 * 104.32385 * 320.41775 * 16 15 13 26 26 C 1.52999 * 117.44575 * 115.75715 * 11 10 9 27 27 H 1.09003 * 119.53595 * 355.88471 * 26 11 10 28 28 C 1.39725 * 120.62573 * 0.27458 * 6 5 4 29 29 F 1.35102 * 120.46567 * 179.70536 * 28 6 5 30 30 C 1.38688 * 119.06360 * 359.45956 * 28 6 5 31 31 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47064 * 299.99538 * 1 2 3 33 33 H 1.08999 * 109.47274 * 59.99681 * 1 2 3 34 34 H 1.08001 * 119.55445 * 0.03956 * 4 3 2 35 35 H 0.97003 * 120.00063 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.47272 * 300.00062 * 10 9 7 37 37 H 1.09001 * 109.47597 * 59.99740 * 10 9 7 38 38 H 1.09002 * 110.41112 * 205.97442 * 15 13 11 39 39 H 1.09000 * 110.40449 * 328.40802 * 15 13 11 40 40 H 0.96992 * 119.99761 * 179.97438 * 20 19 17 41 41 H 1.08996 * 110.40713 * 280.79946 * 25 16 15 42 42 H 1.09006 * 110.50639 * 158.41563 * 25 16 15 43 43 H 1.07995 * 120.78444 * 180.28211 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2935 2.3829 0.0005 5 7 1.8789 3.5580 0.0000 6 6 3.2022 3.6793 -0.0005 7 6 3.8137 5.0245 -0.0005 8 8 5.0237 5.1420 -0.0014 9 7 3.0301 6.1210 -0.0004 10 6 3.6364 7.4546 -0.0010 11 6 2.5343 8.5159 -0.0015 12 1 1.6028 8.2252 -0.4871 13 6 2.9647 9.9793 -0.1204 14 1 4.0177 10.2195 -0.2679 15 6 1.9108 11.0134 -0.5714 16 7 1.2384 11.4323 0.6805 17 6 0.8301 12.6907 1.0342 18 1 0.5841 12.9093 2.0627 19 6 0.7327 13.6852 0.0707 20 7 0.8569 13.3811 -1.2039 21 14 0.4248 15.4550 0.5829 22 1 1.7241 16.1400 0.8019 23 1 -0.3302 16.1557 -0.4867 24 1 -0.3641 15.4762 1.8409 25 6 1.1084 10.1812 1.4630 26 6 2.4356 9.4306 1.2210 27 1 3.0945 9.2620 2.0729 28 6 4.0208 2.5471 -0.0063 29 9 5.3658 2.6742 -0.0128 30 6 3.4332 1.2908 -0.0001 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 0.2151 2.3248 0.0016 35 1 2.0646 6.0272 -0.0008 36 1 4.2549 7.5729 0.8887 37 1 4.2543 7.5725 -0.8912 38 1 2.3947 11.8667 -1.0469 39 1 1.1943 10.5537 -1.2522 40 1 0.7885 14.0760 -1.8772 41 1 0.2667 9.5916 1.1000 42 1 0.9860 10.4047 2.5229 43 1 4.0394 0.3971 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978257550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:19 Heat of formation + Delta-G solvation = -13.001487 kcal Electronic energy + Delta-G solvation = -27470.595916 eV Core-core repulsion = 23240.118090 eV Total energy + Delta-G solvation = -4230.477826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.34112 -41.31186 -39.81236 -38.83513 -38.23575 -35.00596 -33.40773 -32.83640 -31.27712 -30.65931 -28.33543 -27.37687 -27.08788 -25.33947 -24.55607 -23.44679 -21.23261 -21.02369 -20.00377 -19.24539 -19.11519 -18.44369 -18.04507 -16.80847 -16.80510 -16.71298 -16.05863 -15.89430 -15.54851 -15.18558 -15.13406 -14.72437 -14.28931 -13.95893 -13.82921 -13.75318 -13.50811 -13.15499 -13.02708 -12.73727 -12.67994 -12.63564 -12.15182 -11.81475 -11.24958 -11.08601 -10.83562 -10.63696 -10.62938 -10.28776 -10.12197 -10.08935 -10.06543 -9.72991 -9.40888 -9.18419 -9.09196 -8.87755 -8.62391 -6.85619 -5.78874 -3.13126 0.06500 0.41963 2.28407 2.38517 2.90259 3.30467 3.38974 3.44184 3.46023 3.58833 3.67282 3.87368 4.13705 4.26722 4.36869 4.42760 4.47855 4.50954 4.74582 4.88352 4.92330 5.06542 5.25521 5.32239 5.41983 5.46175 5.53997 5.75425 5.82320 5.91247 5.94205 5.99395 6.24936 6.35443 6.38988 6.57867 6.68750 6.73433 6.94332 7.00111 7.37551 7.47416 7.54626 7.72984 8.07333 8.22164 9.12095 9.74808 10.52114 11.35456 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.001960 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.179462 B =14282.173112 C =15154.965483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.302 6.302 3 C 0.132 3.868 4 C 0.011 3.989 5 N -0.390 5.390 6 C 0.009 3.991 7 C 0.570 3.430 8 O -0.527 6.527 9 N -0.701 5.701 10 C 0.153 3.847 11 C -0.150 4.150 12 H 0.104 0.896 13 C -0.161 4.161 14 H 0.104 0.896 15 C 0.184 3.816 16 N -0.595 5.595 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.154 3.846 26 C -0.171 4.171 27 H 0.103 0.897 28 C 0.156 3.844 29 F -0.097 7.097 30 C -0.161 4.161 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.175 0.825 35 H 0.412 0.588 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.024 0.976 40 H 0.254 0.746 41 H 0.024 0.976 42 H 0.049 0.951 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 -28.956 1.507 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.213 6.213 3 C 0.082 3.918 4 C -0.152 4.152 5 N -0.101 5.101 6 C -0.131 4.131 7 C 0.354 3.646 8 O -0.403 6.403 9 N -0.352 5.352 10 C 0.030 3.970 11 C -0.169 4.169 12 H 0.122 0.878 13 C -0.181 4.181 14 H 0.122 0.878 15 C 0.058 3.942 16 N -0.318 5.318 17 C -0.354 4.354 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.028 3.972 26 C -0.191 4.191 27 H 0.121 0.879 28 C 0.133 3.867 29 F -0.075 7.075 30 C -0.188 4.188 31 H 0.127 0.873 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.192 0.808 35 H 0.248 0.752 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.683 -27.977 1.425 28.021 hybrid contribution -0.155 0.082 0.211 0.275 sum 0.528 -27.894 1.637 27.947 Atomic orbital electron populations 1.23301 0.76750 1.05172 1.02338 1.86073 1.22626 1.25388 1.87215 1.20028 0.92060 0.86178 0.93517 1.23091 1.01218 0.86340 1.04572 1.67486 1.09271 1.26936 1.06407 1.21287 0.89411 0.94099 1.08264 1.17480 0.86328 0.83109 0.77732 1.90869 1.13157 1.86285 1.50007 1.45824 1.11005 1.05309 1.73033 1.20956 0.94611 0.79007 1.02378 1.22518 0.99595 0.91464 1.03300 0.87801 1.24239 1.00892 0.91930 1.01089 0.87837 1.21068 0.90477 0.94073 0.88577 1.45211 1.67360 1.02438 1.16814 1.19002 1.38843 0.84414 0.93178 0.90580 1.24904 1.01551 0.98753 0.95162 1.69899 1.55524 1.31832 0.98946 0.86105 0.77758 0.84432 0.77376 1.21499 1.21671 1.20559 1.21135 0.92092 0.88042 0.95962 1.23996 1.01479 1.02216 0.91417 0.87901 1.18235 0.78791 0.92733 0.96912 1.91659 1.27157 1.96405 1.92250 1.20835 0.92930 0.97776 1.07264 0.87269 0.91640 0.91645 0.80839 0.75215 0.91113 0.90785 0.89175 0.95841 0.93565 0.95805 0.93210 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.82 101.05 0.99 1.03 16 2 O -0.30 -1.74 10.50 -18.89 -0.20 -1.94 16 3 C 0.13 0.93 6.72 -38.86 -0.26 0.67 16 4 C 0.01 0.08 10.21 -17.37 -0.18 -0.10 16 5 N -0.39 -3.92 9.52 -9.63 -0.09 -4.01 16 6 C 0.01 0.11 6.75 -82.96 -0.56 -0.45 16 7 C 0.57 8.11 7.80 -12.37 -0.10 8.01 16 8 O -0.53 -9.09 15.30 5.31 0.08 -9.01 16 9 N -0.70 -9.14 5.54 -61.28 -0.34 -9.48 16 10 C 0.15 2.16 5.95 -4.04 -0.02 2.13 16 11 C -0.15 -2.34 5.39 -90.62 -0.49 -2.82 16 12 H 0.10 1.62 8.04 -51.93 -0.42 1.20 16 13 C -0.16 -3.05 6.85 -89.22 -0.61 -3.66 16 14 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 15 C 0.18 4.41 5.70 -2.41 -0.01 4.40 16 16 N -0.59 -15.29 3.38 -168.86 -0.57 -15.86 16 17 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 19 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 20 N -0.92 -26.85 10.87 55.49 0.60 -26.24 16 21 Si 0.91 21.99 29.56 -169.99 -5.03 16.96 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.15 3.22 7.04 -2.41 -0.02 3.21 16 26 C -0.17 -3.04 6.74 -89.22 -0.60 -3.64 16 27 H 0.10 1.70 8.12 -51.93 -0.42 1.27 16 28 C 0.16 1.70 7.31 -38.86 -0.28 1.42 16 29 F -0.10 -1.23 15.54 2.25 0.03 -1.19 16 30 C -0.16 -1.29 10.10 -39.11 -0.40 -1.69 16 31 H 0.11 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.06 0.08 7.67 -51.93 -0.40 -0.32 16 33 H 0.06 0.08 7.67 -51.93 -0.40 -0.32 16 34 H 0.17 0.69 6.31 -52.49 -0.33 0.36 16 35 H 0.41 4.79 7.72 -40.82 -0.32 4.48 16 36 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -33.58 366.71 -8.31 -41.89 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.54 Total: 1.62 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.79 Total: 1.73 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.40 Total: -55.59 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.12 Total: -10.94 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.03 Total: -1.19 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.58 -8.31 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978257550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.888 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds