Wall clock time and date at job start Tue Mar 31 2020 18:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35725 * 117.00187 * 2 1 4 4 C 1.39354 * 120.35825 * 359.97438 * 3 2 1 5 5 N 1.31289 * 120.88130 * 180.02562 * 4 3 2 6 6 C 1.32893 * 121.71544 * 0.02562 * 5 4 3 7 7 C 1.47766 * 119.68669 * 180.02562 * 6 5 4 8 8 O 1.21565 * 119.99686 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99935 * 359.97438 * 7 6 5 10 10 C 1.46504 * 120.00039 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47043 * 180.02562 * 10 9 7 12 12 C 1.29457 * 117.69719 * 94.99790 * 11 10 9 13 13 C 1.50321 * 123.65525 * 180.85454 * 12 11 10 14 14 N 1.47003 * 109.16406 * 349.02546 * 13 12 11 15 15 C 1.36935 * 121.37428 * 222.96382 * 14 13 12 16 16 H 1.08005 * 119.99765 * 155.96476 * 15 14 13 17 17 C 1.38818 * 120.00187 * 335.97255 * 15 14 13 18 18 N 1.31618 * 119.99941 * 344.52117 * 17 15 14 19 19 Si 1.86795 * 119.99880 * 164.52093 * 17 15 14 20 20 H 1.48496 * 109.47360 * 60.00233 * 19 17 15 21 21 H 1.48504 * 109.46905 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47459 * 299.99843 * 19 17 15 23 23 C 1.47335 * 117.25120 * 42.94829 * 14 13 12 24 24 C 1.49970 * 117.69550 * 274.73895 * 11 10 9 25 25 C 1.39717 * 120.62779 * 359.97438 * 6 5 4 26 26 F 1.35103 * 120.46651 * 180.02562 * 25 6 5 27 27 C 1.38691 * 119.06613 * 0.02562 * 25 6 5 28 28 H 1.08994 * 109.47619 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47286 * 300.00681 * 1 2 3 30 30 H 1.09011 * 109.46667 * 60.00219 * 1 2 3 31 31 H 1.07999 * 119.56472 * 359.74456 * 4 3 2 32 32 H 0.97004 * 120.00304 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.46639 * 299.99626 * 10 9 7 34 34 H 1.08994 * 109.47113 * 59.99730 * 10 9 7 35 35 H 1.08009 * 118.17052 * 0.87825 * 12 11 10 36 36 H 1.08999 * 109.52109 * 108.93010 * 13 12 11 37 37 H 1.09002 * 109.52265 * 229.11705 * 13 12 11 38 38 H 0.96993 * 120.00142 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.78044 * 57.80399 * 23 14 13 40 40 H 1.09003 * 109.77920 * 178.61563 * 23 14 13 41 41 H 1.08999 * 109.31100 * 281.28980 * 24 11 10 42 42 H 1.08992 * 109.31785 * 40.71707 * 24 11 10 43 43 H 1.07997 * 120.78473 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.2936 2.3828 -0.0005 5 7 1.8790 3.5579 -0.0010 6 6 3.2024 3.6792 -0.0016 7 6 3.8140 5.0244 -0.0016 8 8 5.0240 5.1419 -0.0016 9 7 3.0304 6.1209 -0.0015 10 6 3.6368 7.4546 -0.0021 11 6 2.5513 8.4998 -0.0013 12 6 2.1880 8.9892 1.1408 13 6 1.1079 10.0226 1.2987 14 7 0.7484 10.5512 -0.0251 15 6 0.5501 11.8908 -0.2280 16 1 0.6720 12.3113 -1.2153 17 6 0.1924 12.7084 0.8353 18 7 -0.2507 12.1763 1.9546 19 14 0.3400 14.5638 0.6775 20 1 -0.5156 15.0352 -0.4409 21 1 -0.1019 15.2048 1.9421 22 1 1.7541 14.9267 0.4059 23 6 0.6108 9.5802 -1.1246 24 6 1.9721 8.9042 -1.3242 25 6 4.0210 2.5469 -0.0011 26 9 5.3660 2.6740 -0.0011 27 6 3.4333 1.2907 -0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.2152 2.3248 -0.0051 32 1 2.0649 6.0271 -0.0012 33 1 4.2552 7.5728 0.8877 34 1 4.2546 7.5724 -0.8923 35 1 2.6893 8.6355 2.0298 36 1 0.2315 9.5661 1.7589 37 1 1.4700 10.8347 1.9292 38 1 -0.5010 12.7476 2.6974 39 1 -0.1411 8.8345 -0.8662 40 1 0.3197 10.0971 -2.0390 41 1 2.6532 9.5963 -1.8195 42 1 1.8452 8.0194 -1.9479 43 1 4.0395 0.3969 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000758622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:16 Heat of formation + Delta-G solvation = -33.785058 kcal Electronic energy + Delta-G solvation = -27910.377592 eV Core-core repulsion = 23678.998523 eV Total energy + Delta-G solvation = -4231.379069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.28782 -41.25092 -39.70867 -38.39743 -37.64980 -34.95929 -33.12957 -32.63028 -31.23687 -30.63465 -29.68943 -28.23696 -26.98785 -25.12035 -24.16457 -23.32494 -22.70508 -21.22166 -20.83466 -19.09245 -18.54986 -18.17898 -17.57538 -16.75148 -16.67616 -16.00673 -15.87013 -15.78849 -15.39065 -15.18448 -14.99372 -14.82534 -14.09168 -13.83255 -13.76782 -13.74155 -13.47008 -13.38846 -13.07158 -12.89974 -12.62940 -12.26314 -12.12607 -11.99215 -11.55619 -11.34691 -10.90375 -10.72954 -10.56374 -10.38905 -10.32877 -10.03624 -9.97907 -9.82486 -9.58715 -9.16127 -8.86571 -8.67671 -8.05247 -6.74612 -5.79811 -3.18528 0.12714 0.47864 2.33138 2.45778 2.56520 3.30256 3.37795 3.39261 3.44847 3.46394 3.66923 3.78466 3.93075 4.33773 4.42217 4.49539 4.50341 4.55852 4.80940 4.92943 5.09782 5.18678 5.32586 5.36424 5.40628 5.59035 5.81421 5.84460 5.95460 6.09094 6.18698 6.35141 6.43936 6.45268 6.53572 6.74150 6.88435 7.07296 7.17760 7.26411 7.33777 7.60208 7.73001 7.82666 8.17018 8.38092 9.19456 9.82237 10.40393 11.30690 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.002247 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.010367 B =12457.243324 C =13339.721687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.303 6.303 3 C 0.131 3.869 4 C 0.011 3.989 5 N -0.389 5.389 6 C 0.010 3.990 7 C 0.567 3.433 8 O -0.530 6.530 9 N -0.697 5.697 10 C 0.156 3.844 11 C -0.166 4.166 12 C -0.123 4.123 13 C 0.194 3.806 14 N -0.595 5.595 15 C -0.246 4.246 16 H 0.068 0.932 17 C -0.001 4.001 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.144 3.856 24 C -0.090 4.090 25 C 0.155 3.845 26 F -0.097 7.097 27 C -0.162 4.162 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.175 0.825 32 H 0.412 0.588 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.024 0.976 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -25.659 -3.482 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.213 6.213 3 C 0.081 3.919 4 C -0.152 4.152 5 N -0.100 5.100 6 C -0.130 4.130 7 C 0.351 3.649 8 O -0.407 6.407 9 N -0.348 5.348 10 C 0.034 3.966 11 C -0.167 4.167 12 C -0.143 4.143 13 C 0.069 3.931 14 N -0.318 5.318 15 C -0.375 4.375 16 H 0.086 0.914 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.018 3.982 24 C -0.129 4.129 25 C 0.132 3.868 26 F -0.075 7.075 27 C -0.188 4.188 28 H 0.127 0.873 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.191 0.809 32 H 0.248 0.752 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.365 -24.848 -3.339 25.182 hybrid contribution 0.085 0.138 0.082 0.182 sum 2.450 -24.709 -3.257 25.043 Atomic orbital electron populations 1.23298 0.76768 1.05126 1.02360 1.86069 1.22609 1.25407 1.87261 1.20022 0.92053 0.86167 0.93629 1.23102 1.01230 0.86339 1.04511 1.67515 1.09276 1.26895 1.06318 1.21335 0.89401 0.94168 1.08074 1.17533 0.86369 0.83145 0.77820 1.90856 1.13179 1.86300 1.50319 1.46005 1.11042 1.05177 1.72576 1.20546 0.94613 0.79356 1.02112 1.20471 1.00181 0.99736 0.96302 1.23296 0.97638 0.97307 0.96104 1.19761 0.91774 0.93329 0.88222 1.44121 1.80239 1.02763 1.04719 1.19145 1.40235 0.82654 0.95507 0.91404 1.24987 0.99255 0.98285 0.97393 1.69994 1.46509 1.34079 1.04963 0.86319 0.77983 0.85358 0.76817 1.20942 1.21644 1.21065 1.20989 0.92731 0.92082 0.92434 1.20788 0.99448 0.99105 0.93570 1.18240 0.78774 0.92744 0.97032 1.91655 1.27177 1.96411 1.92282 1.20824 0.92920 0.97744 1.07341 0.87300 0.91635 0.91652 0.80851 0.75220 0.91350 0.91268 0.88748 0.94065 0.88872 0.93554 0.95803 0.92483 0.91696 0.92858 0.81969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.82 101.05 0.99 1.04 16 2 O -0.30 -1.92 10.50 -18.88 -0.20 -2.12 16 3 C 0.13 1.02 6.72 -38.87 -0.26 0.76 16 4 C 0.01 0.09 10.21 -17.37 -0.18 -0.09 16 5 N -0.39 -4.32 9.52 -9.63 -0.09 -4.41 16 6 C 0.01 0.12 6.75 -82.96 -0.56 -0.44 16 7 C 0.57 8.66 7.80 -12.37 -0.10 8.56 16 8 O -0.53 -9.59 15.30 5.31 0.08 -9.51 16 9 N -0.70 -10.10 5.54 -62.46 -0.35 -10.44 16 10 C 0.16 2.42 5.66 -5.19 -0.03 2.39 16 11 C -0.17 -2.89 5.22 -100.99 -0.53 -3.42 16 12 C -0.12 -2.35 9.47 -35.78 -0.34 -2.68 16 13 C 0.19 4.57 5.23 -5.10 -0.03 4.54 16 14 N -0.60 -14.78 3.01 -173.56 -0.52 -15.31 16 15 C -0.25 -6.71 9.71 -15.06 -0.15 -6.85 16 16 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 17 C 0.00 -0.04 5.01 -17.43 -0.09 -0.12 16 18 N -0.91 -26.07 11.08 55.49 0.61 -25.45 16 19 Si 0.91 21.67 29.58 -169.99 -5.03 16.64 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.14 2.96 6.59 -3.43 -0.02 2.94 16 24 C -0.09 -1.58 5.95 -28.08 -0.17 -1.74 16 25 C 0.16 1.80 7.31 -38.86 -0.28 1.51 16 26 F -0.10 -1.30 15.54 2.25 0.03 -1.26 16 27 C -0.16 -1.40 10.10 -39.12 -0.40 -1.80 16 28 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.07 0.12 7.68 -51.93 -0.40 -0.27 16 30 H 0.06 0.12 7.67 -51.92 -0.40 -0.28 16 31 H 0.17 0.85 6.31 -52.49 -0.33 0.52 16 32 H 0.41 5.61 7.78 -40.82 -0.32 5.29 16 33 H 0.07 1.08 7.78 -51.93 -0.40 0.68 16 34 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.09 1.63 7.73 -52.48 -0.41 1.22 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 2.45 6.41 -51.93 -0.33 2.11 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -32.51 365.30 -7.58 -40.09 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.51 Total: 1.66 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.13 Total: 4.61 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.34 Total: -55.61 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.12 Total: -11.63 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.03 Total: -1.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.51 -7.58 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000758622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.308 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds