Wall clock time and date at job start Tue Mar 31 2020 18:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35725 * 117.00187 * 2 1 4 4 C 1.39354 * 120.35825 * 359.97438 * 3 2 1 5 5 N 1.31289 * 120.88130 * 180.02562 * 4 3 2 6 6 C 1.32893 * 121.71544 * 0.02562 * 5 4 3 7 7 C 1.47766 * 119.68669 * 180.02562 * 6 5 4 8 8 O 1.21565 * 119.99686 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99935 * 359.97438 * 7 6 5 10 10 C 1.46504 * 120.00039 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47043 * 180.02562 * 10 9 7 12 12 C 1.29457 * 117.69719 * 94.99790 * 11 10 9 13 13 C 1.50321 * 123.65525 * 180.85454 * 12 11 10 14 14 N 1.47003 * 109.16406 * 349.02546 * 13 12 11 15 15 C 1.36935 * 121.37428 * 222.96382 * 14 13 12 16 16 H 1.08005 * 119.99765 * 155.96476 * 15 14 13 17 17 C 1.38818 * 120.00187 * 335.97255 * 15 14 13 18 18 N 1.31618 * 119.99941 * 344.52117 * 17 15 14 19 19 Si 1.86795 * 119.99880 * 164.52093 * 17 15 14 20 20 H 1.48496 * 109.47360 * 60.00233 * 19 17 15 21 21 H 1.48504 * 109.46905 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47459 * 299.99843 * 19 17 15 23 23 C 1.47335 * 117.25120 * 42.94829 * 14 13 12 24 24 C 1.49970 * 117.69550 * 274.73895 * 11 10 9 25 25 C 1.39717 * 120.62779 * 359.97438 * 6 5 4 26 26 F 1.35103 * 120.46651 * 180.02562 * 25 6 5 27 27 C 1.38691 * 119.06613 * 0.02562 * 25 6 5 28 28 H 1.08994 * 109.47619 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47286 * 300.00681 * 1 2 3 30 30 H 1.09011 * 109.46667 * 60.00219 * 1 2 3 31 31 H 1.07999 * 119.56472 * 359.74456 * 4 3 2 32 32 H 0.97004 * 120.00304 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.46639 * 299.99626 * 10 9 7 34 34 H 1.08994 * 109.47113 * 59.99730 * 10 9 7 35 35 H 1.08009 * 118.17052 * 0.87825 * 12 11 10 36 36 H 1.08999 * 109.52109 * 108.93010 * 13 12 11 37 37 H 1.09002 * 109.52265 * 229.11705 * 13 12 11 38 38 H 0.96993 * 120.00142 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.78044 * 57.80399 * 23 14 13 40 40 H 1.09003 * 109.77920 * 178.61563 * 23 14 13 41 41 H 1.08999 * 109.31100 * 281.28980 * 24 11 10 42 42 H 1.08992 * 109.31785 * 40.71707 * 24 11 10 43 43 H 1.07997 * 120.78473 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.2936 2.3828 -0.0005 5 7 1.8790 3.5579 -0.0010 6 6 3.2024 3.6792 -0.0016 7 6 3.8140 5.0244 -0.0016 8 8 5.0240 5.1419 -0.0016 9 7 3.0304 6.1209 -0.0015 10 6 3.6368 7.4546 -0.0021 11 6 2.5513 8.4998 -0.0013 12 6 2.1880 8.9892 1.1408 13 6 1.1079 10.0226 1.2987 14 7 0.7484 10.5512 -0.0251 15 6 0.5501 11.8908 -0.2280 16 1 0.6720 12.3113 -1.2153 17 6 0.1924 12.7084 0.8353 18 7 -0.2507 12.1763 1.9546 19 14 0.3400 14.5638 0.6775 20 1 -0.5156 15.0352 -0.4409 21 1 -0.1019 15.2048 1.9421 22 1 1.7541 14.9267 0.4059 23 6 0.6108 9.5802 -1.1246 24 6 1.9721 8.9042 -1.3242 25 6 4.0210 2.5469 -0.0011 26 9 5.3660 2.6740 -0.0011 27 6 3.4333 1.2907 -0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.2152 2.3248 -0.0051 32 1 2.0649 6.0271 -0.0012 33 1 4.2552 7.5728 0.8877 34 1 4.2546 7.5724 -0.8923 35 1 2.6893 8.6355 2.0298 36 1 0.2315 9.5661 1.7589 37 1 1.4700 10.8347 1.9292 38 1 -0.5010 12.7476 2.6974 39 1 -0.1411 8.8345 -0.8662 40 1 0.3197 10.0971 -2.0390 41 1 2.6532 9.5963 -1.8195 42 1 1.8452 8.0194 -1.9479 43 1 4.0395 0.3969 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000758622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:15 Heat of formation + Delta-G solvation = -55.812637 kcal Electronic energy + Delta-G solvation = -27911.332780 eV Core-core repulsion = 23678.998523 eV Total energy + Delta-G solvation = -4232.334257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.18547 -41.96694 -40.73897 -39.43577 -38.91835 -36.46333 -34.60874 -33.54903 -32.68073 -31.74437 -31.36438 -28.82312 -28.30592 -26.33927 -25.40142 -24.43864 -24.07663 -22.84322 -21.97990 -19.82802 -19.56213 -19.32224 -18.93008 -17.50976 -17.44540 -17.33375 -17.02056 -16.94195 -16.63609 -16.29730 -16.18003 -15.74677 -15.56877 -15.33666 -15.17604 -14.81694 -14.59505 -14.38568 -14.21059 -13.95594 -13.87145 -13.60748 -13.26966 -12.93284 -12.93042 -12.76861 -12.58067 -12.51461 -12.25401 -12.11396 -11.70345 -11.54702 -11.26401 -10.89126 -10.75473 -10.67111 -10.23472 -9.70312 -9.66597 -8.74287 -7.87396 -5.28576 -0.67223 -0.21685 1.14233 1.47860 1.50647 1.51436 1.56926 1.82831 2.21031 2.48843 2.52203 2.88240 2.98886 3.29571 3.32573 3.55401 3.62348 3.73138 3.86183 3.96641 4.00612 4.39004 4.40569 4.42987 4.43253 4.54013 4.62898 4.69535 4.73195 4.82675 4.84602 4.91751 5.10482 5.12060 5.21796 5.28232 5.40460 5.48460 5.62100 5.76107 5.95560 6.15844 6.24922 6.34799 6.53121 7.03578 7.14329 7.84298 8.38431 9.21161 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.002247 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.010367 B =12457.243324 C =13339.721687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.148 3.852 4 C 0.019 3.981 5 N -0.401 5.401 6 C -0.017 4.017 7 C 0.567 3.433 8 O -0.566 6.566 9 N -0.692 5.692 10 C 0.165 3.835 11 C -0.140 4.140 12 C -0.140 4.140 13 C 0.206 3.794 14 N -0.615 5.615 15 C -0.257 4.257 16 H 0.071 0.929 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.968 3.032 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.281 1.281 23 C 0.140 3.860 24 C -0.084 4.084 25 C 0.141 3.859 26 F -0.115 7.115 27 C -0.158 4.158 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.209 0.791 32 H 0.417 0.583 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.015 0.985 37 H 0.058 0.942 38 H 0.250 0.750 39 H 0.028 0.972 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 -27.847 -4.683 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.216 6.216 3 C 0.098 3.902 4 C -0.145 4.145 5 N -0.113 5.113 6 C -0.155 4.155 7 C 0.353 3.647 8 O -0.446 6.446 9 N -0.342 5.342 10 C 0.042 3.958 11 C -0.141 4.141 12 C -0.160 4.160 13 C 0.081 3.919 14 N -0.339 5.339 15 C -0.387 4.387 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.586 5.586 19 Si 0.796 3.204 20 H -0.200 1.200 21 H -0.221 1.221 22 H -0.207 1.207 23 C 0.014 3.986 24 C -0.123 4.123 25 C 0.118 3.882 26 F -0.093 7.093 27 C -0.185 4.185 28 H 0.146 0.854 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.225 0.775 32 H 0.254 0.746 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.685 -27.059 -4.568 27.494 hybrid contribution 0.138 0.601 0.389 0.728 sum 1.823 -26.459 -4.180 26.849 Atomic orbital electron populations 1.23687 0.74564 1.06982 1.03607 1.86097 1.24803 1.24369 1.86374 1.20034 0.91762 0.86796 0.91651 1.23669 1.02724 0.85506 1.02626 1.67483 1.08400 1.28436 1.06978 1.20930 0.90344 0.93002 1.11187 1.17889 0.85958 0.84139 0.76755 1.90825 1.14689 1.86997 1.52046 1.45851 1.11233 1.04626 1.72519 1.20355 0.93716 0.79357 1.02341 1.20579 0.99154 0.98699 0.95621 1.22978 0.97877 0.97432 0.97763 1.19401 0.92119 0.93087 0.87335 1.44401 1.80560 1.02931 1.06002 1.19485 1.39450 0.84168 0.95636 0.91171 1.25739 0.99577 1.02301 0.97286 1.70155 1.47775 1.35161 1.05511 0.85325 0.77935 0.80494 0.76609 1.20022 1.22065 1.20716 1.21169 0.94636 0.91545 0.91210 1.20726 0.97448 1.00095 0.93996 1.18413 0.78078 0.93618 0.98089 1.91606 1.28435 1.96582 1.92646 1.21002 0.93740 0.97232 1.06495 0.85354 0.90426 0.90295 0.77506 0.74579 0.91546 0.90786 0.87018 0.96699 0.92397 0.94108 0.95351 0.92142 0.91638 0.89648 0.79916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.79 10.50 -90.47 -0.95 -3.74 16 3 C 0.15 1.87 6.72 22.73 0.15 2.02 16 4 C 0.02 0.25 10.21 85.04 0.87 1.12 16 5 N -0.40 -8.19 9.52 -184.39 -1.76 -9.94 16 6 C -0.02 -0.43 6.75 41.86 0.28 -0.15 16 7 C 0.57 17.14 7.80 86.76 0.68 17.82 16 8 O -0.57 -20.72 15.30 -3.92 -0.06 -20.78 16 9 N -0.69 -19.29 5.54 -469.79 -2.60 -21.89 16 10 C 0.17 4.92 5.66 85.63 0.48 5.40 16 11 C -0.14 -4.69 5.22 -15.14 -0.08 -4.77 16 12 C -0.14 -5.35 9.47 27.10 0.26 -5.10 16 13 C 0.21 10.00 5.23 85.42 0.45 10.45 16 14 N -0.61 -30.89 3.01 -703.03 -2.11 -33.01 16 15 C -0.26 -14.18 9.71 84.04 0.82 -13.36 16 16 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 17 C -0.05 -3.04 5.01 84.86 0.43 -2.61 16 18 N -0.94 -55.46 11.08 21.65 0.24 -55.22 16 19 Si 0.97 45.12 29.58 68.60 2.03 47.15 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 C 0.14 5.61 6.59 86.32 0.57 6.18 16 24 C -0.08 -2.78 5.95 29.72 0.18 -2.60 16 25 C 0.14 3.19 7.31 22.74 0.17 3.36 16 26 F -0.11 -3.10 15.54 44.97 0.70 -2.40 16 27 C -0.16 -2.44 10.10 22.57 0.23 -2.22 16 28 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.08 -0.03 7.68 -2.39 -0.02 -0.04 16 30 H 0.08 -0.05 7.67 -2.38 -0.02 -0.07 16 31 H 0.21 1.16 6.31 -2.91 -0.02 1.14 16 32 H 0.42 10.76 7.78 -92.71 -0.72 10.03 16 33 H 0.07 2.04 7.78 -2.39 -0.02 2.03 16 34 H 0.07 2.18 8.11 -2.39 -0.02 2.16 16 35 H 0.11 3.85 7.73 -2.91 -0.02 3.83 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 3.19 6.41 -2.39 -0.02 3.17 16 38 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 2.35 7.96 -2.39 -0.02 2.33 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -72.48 365.30 2.41 -70.07 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.34 Total: 13.10 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 6.58 Total: 16.66 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -6.23 Total: -120.06 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.01 Total: -24.52 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.70 Total: -2.40 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -72.48 2.41 -70.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000758622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.260 kcal (2) G-P(sol) polarization free energy of solvation -72.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds