Wall clock time and date at job start Tue Mar 31 2020 18:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21280 * 119.99819 * 2 1 4 4 N 1.34774 * 120.00837 * 179.97438 * 2 1 3 5 5 C 1.39285 * 120.00689 * 185.72752 * 4 2 1 6 6 C 1.38781 * 120.14989 * 24.80994 * 5 4 2 7 7 C 1.38097 * 120.14290 * 180.30118 * 6 5 4 8 8 C 1.38434 * 120.44904 * 359.70881 * 7 6 5 9 9 C 1.38147 * 120.30183 * 359.97438 * 8 7 6 10 10 F 1.35097 * 120.07840 * 180.02562 * 9 8 7 11 11 C 1.39947 * 119.84780 * 0.02562 * 9 8 7 12 12 C 1.47367 * 120.22018 * 180.02562 * 11 9 8 13 13 O 1.21612 * 119.99885 * 90.00019 * 12 11 9 14 14 N 1.34778 * 120.00415 * 270.00185 * 12 11 9 15 15 C 1.46500 * 120.00347 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.63971 * 323.31791 * 15 14 12 17 17 C 1.55156 * 110.72067 * 199.97393 * 15 14 12 18 18 C 1.55129 * 101.48756 * 205.96780 * 17 15 14 19 19 N 1.47434 * 104.71991 * 37.29726 * 18 17 15 20 20 C 1.36929 * 125.64383 * 155.81422 * 19 18 17 21 21 H 1.08008 * 119.99453 * 184.87668 * 20 19 18 22 22 C 1.38803 * 120.00570 * 4.88396 * 20 19 18 23 23 N 1.31618 * 120.00229 * 214.15712 * 22 20 19 24 24 Si 1.86802 * 120.00090 * 34.42515 * 22 20 19 25 25 H 1.48494 * 109.47212 * 269.73094 * 24 22 20 26 26 H 1.48499 * 109.46858 * 29.72949 * 24 22 20 27 27 H 1.48502 * 109.47118 * 149.72841 * 24 22 20 28 28 C 1.47024 * 108.70298 * 335.55419 * 19 18 17 29 29 H 1.09001 * 109.47081 * 239.99823 * 1 2 3 30 30 H 1.08992 * 109.47526 * 0.02562 * 1 2 3 31 31 H 1.09009 * 109.46785 * 120.00539 * 1 2 3 32 32 H 0.97008 * 119.99547 * 5.72458 * 4 2 1 33 33 H 1.08005 * 119.93155 * 0.02562 * 6 5 4 34 34 H 1.08003 * 119.77858 * 179.69589 * 7 6 5 35 35 H 1.07997 * 119.84927 * 179.97438 * 8 7 6 36 36 H 0.96999 * 119.99482 * 359.97438 * 14 12 11 37 37 H 1.08999 * 111.00698 * 324.21193 * 17 15 14 38 38 H 1.09007 * 110.99982 * 88.02366 * 17 15 14 39 39 H 1.08996 * 110.49532 * 278.46003 * 18 17 15 40 40 H 1.08997 * 110.34466 * 156.06203 * 18 17 15 41 41 H 0.96996 * 119.99838 * 355.26512 * 23 22 20 42 42 H 1.08996 * 109.88312 * 120.70314 * 28 19 18 43 43 H 1.09003 * 109.87981 * 241.86961 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5686 -1.1700 0.1209 6 6 4.2172 -0.1084 0.7361 7 6 5.5934 -0.1085 0.8498 8 6 6.3379 -1.1671 0.3583 9 6 5.7109 -2.2364 -0.2516 10 9 6.4418 -3.2673 -0.7292 11 6 4.3168 -2.2492 -0.3736 12 6 3.6395 -3.3860 -1.0222 13 8 3.2829 -4.3405 -0.3584 14 7 3.4150 -3.3677 -2.3511 15 6 2.7422 -4.4980 -2.9960 16 1 3.0454 -5.4388 -2.5364 17 6 3.0284 -4.5099 -4.5208 18 6 1.7816 -5.2567 -5.0634 19 7 0.6669 -4.7858 -4.2211 20 6 -0.6553 -4.7802 -4.5772 21 1 -1.3900 -4.3412 -3.9185 22 6 -1.0513 -5.3389 -5.7846 23 7 -2.0554 -4.8143 -6.4546 24 14 -0.1640 -6.8399 -6.4549 25 1 0.9635 -6.4042 -7.3174 26 1 0.3605 -7.6498 -5.3262 27 1 -1.1108 -7.6588 -7.2539 28 6 1.2094 -4.3290 -2.9333 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5140 -0.8900 32 1 1.6996 -2.0052 -0.0829 33 1 3.6446 0.7218 1.1228 34 1 6.0925 0.7230 1.3253 35 1 7.4137 -1.1570 0.4521 36 1 3.6991 -2.6062 -2.8804 37 1 3.0831 -3.4956 -4.9161 38 1 3.9410 -5.0632 -4.7427 39 1 1.9068 -6.3344 -4.9590 40 1 1.6064 -4.9935 -6.1065 41 1 -2.5625 -4.0808 -6.0730 42 1 0.9583 -3.2800 -2.7763 43 1 0.8024 -4.9349 -2.1237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015786020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:42 Heat of formation + Delta-G solvation = -53.454251 kcal Electronic energy + Delta-G solvation = -29203.483305 eV Core-core repulsion = 24971.251316 eV Total energy + Delta-G solvation = -4232.231989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.22246 -41.19476 -39.79498 -38.45332 -37.46668 -35.21287 -34.25847 -32.33901 -31.40684 -31.07393 -29.46295 -28.94904 -27.84534 -24.69141 -23.58118 -23.50904 -21.22059 -20.99467 -20.87676 -19.97679 -18.70046 -17.97697 -17.72985 -17.33977 -16.58832 -16.35876 -16.05006 -15.79893 -15.72085 -15.36523 -15.25557 -14.52438 -14.34625 -14.10940 -13.66825 -13.49460 -13.47446 -13.13318 -13.09373 -12.91890 -12.65367 -12.54479 -12.26478 -12.12569 -11.93314 -11.54458 -11.16846 -11.09648 -10.96613 -10.75637 -10.24389 -10.14178 -10.02814 -9.79710 -9.42844 -9.19020 -9.07188 -8.55236 -8.36758 -7.17206 -6.43153 -3.18203 0.55987 0.77086 2.15087 2.32348 2.55915 2.97880 3.24798 3.38665 3.52279 3.66154 3.87434 4.24981 4.38507 4.51966 4.55762 4.66730 4.85665 4.93327 4.94974 4.95475 5.01458 5.08685 5.22291 5.38768 5.43790 5.48686 5.57023 5.65526 5.67318 5.77090 5.89352 5.94038 6.00255 6.10874 6.19861 6.44594 6.49178 6.50496 6.66488 6.70018 6.87771 7.38287 7.60566 7.64189 8.03455 8.28467 8.97196 9.55937 10.21540 11.06267 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.003527 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.896377 B = 7937.652716 C = 9474.447409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.519 3.481 3 O -0.520 6.520 4 N -0.670 5.670 5 C 0.217 3.783 6 C -0.148 4.148 7 C -0.053 4.053 8 C -0.177 4.177 9 C 0.155 3.845 10 F -0.127 7.127 11 C -0.198 4.198 12 C 0.561 3.439 13 O -0.523 6.523 14 N -0.703 5.703 15 C 0.128 3.872 16 H 0.097 0.903 17 C -0.135 4.135 18 C 0.113 3.887 19 N -0.604 5.604 20 C -0.340 4.340 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.906 5.906 24 Si 1.051 2.949 25 H -0.292 1.292 26 H -0.289 1.289 27 H -0.296 1.296 28 C 0.131 3.869 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.419 0.581 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.402 0.598 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.264 0.736 42 H 0.029 0.971 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.762 10.399 14.370 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.308 3.692 3 O -0.396 6.396 4 N -0.314 5.314 5 C 0.120 3.880 6 C -0.168 4.168 7 C -0.072 4.072 8 C -0.197 4.197 9 C 0.135 3.865 10 F -0.106 7.106 11 C -0.205 4.205 12 C 0.346 3.654 13 O -0.399 6.399 14 N -0.353 5.353 15 C 0.024 3.976 16 H 0.115 0.885 17 C -0.174 4.174 18 C -0.013 4.013 19 N -0.332 5.332 20 C -0.467 4.467 21 H 0.095 0.905 22 C -0.216 4.216 23 N -0.546 5.546 24 Si 0.882 3.118 25 H -0.220 1.220 26 H -0.215 1.215 27 H -0.224 1.224 28 C 0.003 3.997 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.257 0.743 33 H 0.175 0.825 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.237 0.763 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 14.769 9.401 13.522 22.122 hybrid contribution -0.028 0.564 0.962 1.115 sum 14.741 9.965 14.485 22.943 Atomic orbital electron populations 1.21984 0.89769 1.06404 1.05463 1.21137 0.91280 0.82493 0.74254 1.90690 1.70461 1.31171 1.47232 1.43666 1.04961 1.11179 1.71595 1.17381 0.83044 0.93405 0.94201 1.21437 0.95013 0.99554 1.00778 1.21031 0.93122 0.97079 0.95964 1.21059 1.01403 0.94017 1.03177 1.17277 0.86893 0.85690 0.96680 1.91553 1.76642 1.56658 1.85713 1.19575 0.92754 0.98767 1.09428 1.17896 0.79056 0.85917 0.82576 1.90859 1.51084 1.34282 1.63694 1.46100 1.59296 1.22469 1.07439 1.22191 0.93317 0.89096 0.93043 0.88465 1.23071 0.99120 1.01815 0.93398 1.21903 0.86606 0.96089 0.96708 1.44804 1.02702 1.74901 1.10817 1.19895 0.81948 1.38566 1.06245 0.90548 1.25710 1.00309 1.02439 0.93148 1.70939 1.24293 1.26057 1.33305 0.83996 0.74831 0.77562 0.75380 1.22019 1.21534 1.22350 1.21602 0.90281 0.97831 0.89943 0.88596 0.88111 0.88271 0.74330 0.82545 0.84142 0.84016 0.76315 0.90624 0.90721 0.95302 0.91631 0.92546 0.95338 0.95036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 10.32 36.00 0.37 -0.94 16 2 C 0.52 5.45 7.74 -10.99 -0.09 5.36 16 3 O -0.52 -6.80 14.24 5.56 0.08 -6.72 16 4 N -0.67 -7.19 5.16 -9.69 -0.05 -7.24 16 5 C 0.22 2.51 6.44 -83.49 -0.54 1.97 16 6 C -0.15 -1.51 8.70 -39.43 -0.34 -1.86 16 7 C -0.05 -0.43 10.02 -39.56 -0.40 -0.83 16 8 C -0.18 -1.55 10.00 -39.54 -0.40 -1.95 16 9 C 0.16 1.79 7.29 -38.98 -0.28 1.51 16 10 F -0.13 -1.62 16.83 2.25 0.04 -1.58 16 11 C -0.20 -2.49 5.65 -104.76 -0.59 -3.08 16 12 C 0.56 8.23 5.80 -12.55 -0.07 8.16 16 13 O -0.52 -9.43 16.83 5.27 0.09 -9.34 16 14 N -0.70 -9.68 5.13 -53.12 -0.27 -9.96 16 15 C 0.13 2.09 3.23 -66.09 -0.21 1.88 16 16 H 0.10 1.68 7.69 -51.93 -0.40 1.28 16 17 C -0.14 -2.15 6.71 -24.46 -0.16 -2.31 16 18 C 0.11 2.36 4.77 -2.40 -0.01 2.35 16 19 N -0.60 -14.48 3.32 -169.93 -0.56 -15.04 16 20 C -0.34 -9.51 10.35 -15.07 -0.16 -9.67 16 21 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 22 C -0.01 -0.41 5.32 -17.43 -0.09 -0.50 16 23 N -0.91 -27.64 13.70 55.49 0.76 -26.88 16 24 Si 1.05 25.95 24.85 -169.99 -4.22 21.73 16 25 H -0.29 -6.74 6.50 56.52 0.37 -6.38 16 26 H -0.29 -6.89 6.72 56.52 0.38 -6.51 16 27 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 28 C 0.13 2.60 6.99 -3.06 -0.02 2.58 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.42 4.42 7.89 -40.82 -0.32 4.10 16 33 H 0.16 1.65 5.78 -52.48 -0.30 1.35 16 34 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.40 4.75 8.50 -40.82 -0.35 4.40 16 37 H 0.08 1.12 8.00 -51.93 -0.42 0.70 16 38 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.03 0.62 6.29 -51.93 -0.33 0.29 16 40 H 0.07 1.47 5.99 -51.93 -0.31 1.15 16 41 H 0.26 7.95 8.73 -40.82 -0.36 7.60 16 42 H 0.03 0.56 8.03 -51.93 -0.42 0.14 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -34.54 361.50 -7.12 -41.66 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.43 Total: 5.23 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -2.99 Total: 2.69 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.13 Total: -59.11 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.17 Total: -16.06 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -4.22 Total: 21.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.54 -7.12 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015786020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.795 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds