Wall clock time and date at job start Tue Mar 31 2020 18:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21280 * 119.99819 * 2 1 4 4 N 1.34774 * 120.00837 * 179.97438 * 2 1 3 5 5 C 1.39285 * 120.00689 * 185.72752 * 4 2 1 6 6 C 1.38781 * 120.14989 * 24.80994 * 5 4 2 7 7 C 1.38097 * 120.14290 * 180.30118 * 6 5 4 8 8 C 1.38434 * 120.44904 * 359.70881 * 7 6 5 9 9 C 1.38147 * 120.30183 * 359.97438 * 8 7 6 10 10 F 1.35097 * 120.07840 * 180.02562 * 9 8 7 11 11 C 1.39947 * 119.84780 * 0.02562 * 9 8 7 12 12 C 1.47367 * 120.22018 * 180.02562 * 11 9 8 13 13 O 1.21612 * 119.99885 * 90.00019 * 12 11 9 14 14 N 1.34778 * 120.00415 * 270.00185 * 12 11 9 15 15 C 1.46500 * 120.00347 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.63971 * 323.31791 * 15 14 12 17 17 C 1.55156 * 110.72067 * 199.97393 * 15 14 12 18 18 C 1.55129 * 101.48756 * 205.96780 * 17 15 14 19 19 N 1.47434 * 104.71991 * 37.29726 * 18 17 15 20 20 C 1.36929 * 125.64383 * 155.81422 * 19 18 17 21 21 H 1.08008 * 119.99453 * 184.87668 * 20 19 18 22 22 C 1.38803 * 120.00570 * 4.88396 * 20 19 18 23 23 N 1.31618 * 120.00229 * 214.15712 * 22 20 19 24 24 Si 1.86802 * 120.00090 * 34.42515 * 22 20 19 25 25 H 1.48494 * 109.47212 * 269.73094 * 24 22 20 26 26 H 1.48499 * 109.46858 * 29.72949 * 24 22 20 27 27 H 1.48502 * 109.47118 * 149.72841 * 24 22 20 28 28 C 1.47024 * 108.70298 * 335.55419 * 19 18 17 29 29 H 1.09001 * 109.47081 * 239.99823 * 1 2 3 30 30 H 1.08992 * 109.47526 * 0.02562 * 1 2 3 31 31 H 1.09009 * 109.46785 * 120.00539 * 1 2 3 32 32 H 0.97008 * 119.99547 * 5.72458 * 4 2 1 33 33 H 1.08005 * 119.93155 * 0.02562 * 6 5 4 34 34 H 1.08003 * 119.77858 * 179.69589 * 7 6 5 35 35 H 1.07997 * 119.84927 * 179.97438 * 8 7 6 36 36 H 0.96999 * 119.99482 * 359.97438 * 14 12 11 37 37 H 1.08999 * 111.00698 * 324.21193 * 17 15 14 38 38 H 1.09007 * 110.99982 * 88.02366 * 17 15 14 39 39 H 1.08996 * 110.49532 * 278.46003 * 18 17 15 40 40 H 1.08997 * 110.34466 * 156.06203 * 18 17 15 41 41 H 0.96996 * 119.99838 * 355.26512 * 23 22 20 42 42 H 1.08996 * 109.88312 * 120.70314 * 28 19 18 43 43 H 1.09003 * 109.87981 * 241.86961 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5686 -1.1700 0.1209 6 6 4.2172 -0.1084 0.7361 7 6 5.5934 -0.1085 0.8498 8 6 6.3379 -1.1671 0.3583 9 6 5.7109 -2.2364 -0.2516 10 9 6.4418 -3.2673 -0.7292 11 6 4.3168 -2.2492 -0.3736 12 6 3.6395 -3.3860 -1.0222 13 8 3.2829 -4.3405 -0.3584 14 7 3.4150 -3.3677 -2.3511 15 6 2.7422 -4.4980 -2.9960 16 1 3.0454 -5.4388 -2.5364 17 6 3.0284 -4.5099 -4.5208 18 6 1.7816 -5.2567 -5.0634 19 7 0.6669 -4.7858 -4.2211 20 6 -0.6553 -4.7802 -4.5772 21 1 -1.3900 -4.3412 -3.9185 22 6 -1.0513 -5.3389 -5.7846 23 7 -2.0554 -4.8143 -6.4546 24 14 -0.1640 -6.8399 -6.4549 25 1 0.9635 -6.4042 -7.3174 26 1 0.3605 -7.6498 -5.3262 27 1 -1.1108 -7.6588 -7.2539 28 6 1.2094 -4.3290 -2.9333 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5140 -0.8900 32 1 1.6996 -2.0052 -0.0829 33 1 3.6446 0.7218 1.1228 34 1 6.0925 0.7230 1.3253 35 1 7.4137 -1.1570 0.4521 36 1 3.6991 -2.6062 -2.8804 37 1 3.0831 -3.4956 -4.9161 38 1 3.9410 -5.0632 -4.7427 39 1 1.9068 -6.3344 -4.9590 40 1 1.6064 -4.9935 -6.1065 41 1 -2.5625 -4.0808 -6.0730 42 1 0.9583 -3.2800 -2.7763 43 1 0.8024 -4.9349 -2.1237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015786020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:41 Heat of formation + Delta-G solvation = -78.909127 kcal Electronic energy + Delta-G solvation = -29204.587112 eV Core-core repulsion = 24971.251316 eV Total energy + Delta-G solvation = -4233.335796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.11633 -42.09487 -40.94302 -39.50361 -38.82413 -36.05117 -35.79358 -34.19162 -32.40826 -31.85891 -31.07446 -29.74958 -29.33408 -26.17876 -24.88421 -24.33507 -22.83047 -22.18818 -21.70688 -21.49113 -19.77484 -19.39976 -18.78242 -18.57860 -17.83424 -17.30147 -17.00446 -16.85839 -16.73757 -16.62550 -16.23926 -15.81707 -15.54202 -15.34962 -15.32538 -14.99939 -14.65342 -14.34168 -14.15432 -13.87359 -13.63910 -13.56035 -13.32856 -13.11706 -13.00419 -12.99739 -12.91481 -12.65110 -12.40195 -11.88817 -11.78450 -11.61500 -11.44608 -11.24446 -11.06163 -10.53989 -10.33367 -10.03137 -9.36063 -9.20223 -8.69471 -5.37407 -0.24854 -0.02083 1.17748 1.35067 1.41084 1.54867 1.71179 1.75382 1.86768 2.44324 2.50657 2.96565 3.05256 3.28799 3.47757 3.52472 3.60346 3.77948 3.80821 3.89567 4.06027 4.16348 4.21362 4.31158 4.39639 4.42990 4.49343 4.68342 4.74922 4.80452 4.84805 4.87161 4.90216 4.95672 5.00953 5.12242 5.17820 5.27111 5.31973 5.56571 5.73614 6.05092 6.09064 6.24800 6.77882 6.80521 6.90017 7.47524 8.12490 8.80840 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.003527 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.896377 B = 7937.652716 C = 9474.447409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.517 3.483 3 O -0.548 6.548 4 N -0.670 5.670 5 C 0.204 3.796 6 C -0.154 4.154 7 C -0.037 4.037 8 C -0.164 4.164 9 C 0.140 3.860 10 F -0.137 7.137 11 C -0.215 4.215 12 C 0.567 3.433 13 O -0.561 6.561 14 N -0.691 5.691 15 C 0.143 3.857 16 H 0.092 0.908 17 C -0.117 4.117 18 C 0.101 3.899 19 N -0.624 5.624 20 C -0.333 4.333 21 H 0.046 0.954 22 C -0.066 4.066 23 N -0.940 5.940 24 Si 1.093 2.907 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.303 1.303 28 C 0.130 3.870 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.418 0.582 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.414 0.586 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.034 0.966 40 H 0.053 0.947 41 H 0.251 0.749 42 H 0.031 0.969 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.976 11.076 14.950 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.308 3.692 3 O -0.425 6.425 4 N -0.314 5.314 5 C 0.106 3.894 6 C -0.175 4.175 7 C -0.055 4.055 8 C -0.183 4.183 9 C 0.119 3.881 10 F -0.116 7.116 11 C -0.221 4.221 12 C 0.353 3.647 13 O -0.440 6.440 14 N -0.342 5.342 15 C 0.037 3.963 16 H 0.111 0.889 17 C -0.156 4.156 18 C -0.024 4.024 19 N -0.352 5.352 20 C -0.461 4.461 21 H 0.063 0.937 22 C -0.262 4.262 23 N -0.583 5.583 24 Si 0.919 3.081 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.231 1.231 28 C 0.004 3.996 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.255 0.745 33 H 0.171 0.829 34 H 0.196 0.804 35 H 0.190 0.810 36 H 0.252 0.748 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 18.032 10.108 14.113 25.030 hybrid contribution -1.040 0.452 0.925 1.463 sum 16.992 10.560 15.038 25.028 Atomic orbital electron populations 1.22020 0.87580 1.07182 1.06325 1.21636 0.92287 0.81931 0.73331 1.90669 1.71212 1.31946 1.48680 1.43731 1.04983 1.11206 1.71449 1.17573 0.83310 0.93719 0.94778 1.21572 0.96153 0.98962 1.00766 1.21461 0.92148 0.97614 0.94322 1.21408 1.02922 0.92680 1.01287 1.17563 0.86517 0.86360 0.97614 1.91526 1.76731 1.57325 1.86012 1.19420 0.93352 0.98448 1.10928 1.18210 0.78188 0.85929 0.82397 1.90837 1.52672 1.35991 1.64487 1.45924 1.58607 1.22197 1.07442 1.21856 0.90695 0.89771 0.93940 0.88949 1.23012 0.98059 1.02573 0.91932 1.22100 0.87587 0.96903 0.95835 1.44858 1.02100 1.75192 1.13062 1.19797 0.83707 1.37096 1.05531 0.93652 1.26875 1.00907 1.04301 0.94128 1.71050 1.25956 1.26873 1.34381 0.83435 0.74775 0.74248 0.75669 1.18902 1.20296 1.23078 1.21676 0.92965 0.97229 0.87758 0.86593 0.87403 0.88380 0.74510 0.82901 0.80413 0.80982 0.74847 0.89151 0.87032 0.94876 0.92892 0.93972 0.95125 0.96691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.32 71.23 0.74 -1.71 16 2 C 0.52 10.67 7.74 87.66 0.68 11.34 16 3 O -0.55 -14.04 14.24 -3.03 -0.04 -14.09 16 4 N -0.67 -14.21 5.16 -302.97 -1.56 -15.77 16 5 C 0.20 4.52 6.44 38.59 0.25 4.77 16 6 C -0.15 -2.88 8.70 22.37 0.19 -2.68 16 7 C -0.04 -0.47 10.02 22.28 0.22 -0.25 16 8 C -0.16 -2.31 10.00 22.29 0.22 -2.08 16 9 C 0.14 2.95 7.29 22.66 0.17 3.11 16 10 F -0.14 -3.26 16.83 44.97 0.76 -2.50 16 11 C -0.21 -5.15 5.65 -19.95 -0.11 -5.26 16 12 C 0.57 16.23 5.80 86.65 0.50 16.73 16 13 O -0.56 -20.24 16.83 -4.07 -0.07 -20.31 16 14 N -0.69 -18.02 5.13 -440.22 -2.26 -20.27 16 15 C 0.14 4.45 3.23 46.18 0.15 4.59 16 16 H 0.09 3.05 7.69 -2.39 -0.02 3.03 16 17 C -0.12 -3.36 6.71 32.06 0.22 -3.14 16 18 C 0.10 4.02 4.77 86.93 0.42 4.44 16 19 N -0.62 -29.84 3.32 -691.53 -2.29 -32.14 16 20 C -0.33 -19.12 10.35 84.03 0.87 -18.25 16 21 H 0.05 2.81 8.06 -2.91 -0.02 2.78 16 22 C -0.07 -3.87 5.32 84.86 0.45 -3.42 16 23 N -0.94 -59.00 13.70 21.65 0.30 -58.71 16 24 Si 1.09 52.25 24.85 68.60 1.70 53.95 16 25 H -0.26 -11.28 6.50 99.48 0.65 -10.63 16 26 H -0.28 -12.57 6.72 99.48 0.67 -11.90 16 27 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 28 C 0.13 5.18 6.99 86.73 0.61 5.79 16 29 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.11 1.39 8.12 -2.39 -0.02 1.37 16 31 H 0.10 1.44 8.14 -2.38 -0.02 1.43 16 32 H 0.42 8.93 7.89 -92.70 -0.73 8.19 16 33 H 0.15 3.02 5.78 -2.91 -0.02 3.00 16 34 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.41 8.92 8.50 -92.71 -0.79 8.13 16 37 H 0.09 2.35 8.00 -2.39 -0.02 2.33 16 38 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.03 1.33 6.29 -2.39 -0.02 1.31 16 40 H 0.05 2.26 5.99 -2.39 -0.01 2.24 16 41 H 0.25 15.80 8.73 -92.71 -0.81 14.99 16 42 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -77.43 361.50 1.52 -75.91 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.58 Total: 19.94 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.56 Total: 13.99 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.82 Total: -126.89 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.11 Total: -34.40 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.76 Total: -2.50 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 1.70 Total: 53.95 kcal Total: -77.43 1.52 -75.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015786020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.996 kcal (2) G-P(sol) polarization free energy of solvation -77.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds