Wall clock time and date at job start Tue Mar 31 2020 18:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21289 * 120.00174 * 2 1 4 4 N 1.34779 * 119.99692 * 179.97438 * 2 1 3 5 5 C 1.40060 * 119.99662 * 184.62657 * 4 2 1 6 6 C 1.39044 * 119.96566 * 324.64766 * 5 4 2 7 7 C 1.38106 * 120.26953 * 179.72534 * 6 5 4 8 8 C 1.38339 * 120.19869 * 0.54951 * 7 6 5 9 9 F 1.35092 * 120.04018 * 179.75139 * 8 7 6 10 10 C 1.39818 * 119.91596 * 359.72682 * 8 7 6 11 11 C 1.47709 * 120.13030 * 180.02562 * 10 8 7 12 12 O 1.21569 * 119.99693 * 359.97192 * 11 10 8 13 13 N 1.34768 * 120.00018 * 179.97438 * 11 10 8 14 14 C 1.46502 * 120.00180 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.88403 * 328.87537 * 14 13 11 16 16 C 1.55153 * 111.00626 * 204.99646 * 14 13 11 17 17 C 1.54321 * 102.94342 * 277.42463 * 16 14 13 18 18 N 1.47026 * 107.27009 * 337.80938 * 17 16 14 19 19 C 1.36939 * 125.64590 * 178.89488 * 18 17 16 20 20 H 1.08000 * 119.99467 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00504 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99616 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00130 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47163 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46814 * 119.99697 * 23 21 19 26 26 H 1.48493 * 109.46860 * 239.99711 * 23 21 19 27 27 C 1.47420 * 108.70124 * 358.93703 * 18 17 16 28 28 C 1.38479 * 119.96090 * 144.92401 * 5 4 2 29 29 H 1.08997 * 109.47144 * 240.00410 * 1 2 3 30 30 H 1.09001 * 109.46835 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47380 * 120.00312 * 1 2 3 32 32 H 0.96990 * 120.00246 * 4.62835 * 4 2 1 33 33 H 1.08002 * 119.86043 * 359.97314 * 6 5 4 34 34 H 1.07997 * 119.90240 * 180.25673 * 7 6 5 35 35 H 0.97003 * 120.00262 * 359.97438 * 13 11 10 36 36 H 1.09004 * 110.72101 * 35.78578 * 16 14 13 37 37 H 1.08998 * 110.72378 * 158.88167 * 16 14 13 38 38 H 1.09003 * 109.88494 * 97.22229 * 17 16 14 39 39 H 1.08995 * 109.89004 * 218.38899 * 17 16 14 40 40 H 0.96999 * 119.99587 * 179.97438 * 22 21 19 41 41 H 1.09003 * 110.36952 * 265.29320 * 27 18 17 42 42 H 1.09002 * 110.36644 * 142.97126 * 27 18 17 43 43 H 1.07996 * 120.10209 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5780 -1.1692 0.0984 6 6 4.3181 -0.1607 -0.5086 7 6 5.6957 -0.1533 -0.4114 8 6 6.3498 -1.1562 0.2815 9 9 7.6977 -1.1486 0.3704 10 6 5.6138 -2.1775 0.8902 11 6 6.3073 -3.2504 1.6317 12 8 7.5202 -3.2468 1.7132 13 7 5.5953 -4.2331 2.2178 14 6 6.2831 -5.2976 2.9528 15 1 7.2639 -5.4967 2.5211 16 6 5.4228 -6.5880 2.9976 17 6 4.4589 -6.3202 4.1726 18 7 5.0866 -5.3032 5.0290 19 6 4.5423 -4.7727 6.1681 20 1 5.0855 -4.0269 6.7294 21 6 3.2925 -5.1936 6.6014 22 7 2.6303 -6.1022 5.9170 23 14 2.5498 -4.4695 8.1550 24 1 3.4875 -3.4745 8.7346 25 1 1.2635 -3.8047 7.8253 26 1 2.3084 -5.5540 9.1401 27 6 6.3984 -4.9483 4.4576 28 6 4.2211 -2.1787 0.7947 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5139 -0.8899 32 1 1.6983 -2.0059 -0.0669 33 1 3.8133 0.6223 -1.0550 34 1 6.2645 0.6352 -0.8817 35 1 4.6274 -4.2358 2.1530 36 1 4.8700 -6.7155 2.0668 37 1 6.0455 -7.4600 3.1971 38 1 3.5065 -5.9493 3.7938 39 1 4.3024 -7.2374 4.7403 40 1 1.7572 -6.3966 6.2200 41 1 7.1876 -5.5377 4.9244 42 1 6.5926 -3.8835 4.5861 43 1 3.6470 -2.9649 1.2622 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016381018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:48 Heat of formation + Delta-G solvation = -55.651475 kcal Electronic energy + Delta-G solvation = -28816.825697 eV Core-core repulsion = 24584.498429 eV Total energy + Delta-G solvation = -4232.327268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.79510 -40.84976 -39.73722 -38.26445 -37.13768 -34.93340 -33.85342 -32.26956 -31.13287 -30.99980 -29.18375 -28.53449 -27.30092 -24.80346 -24.16787 -22.83321 -21.76430 -20.45302 -20.13042 -19.81356 -18.38932 -17.63478 -17.56725 -16.91965 -16.49218 -16.11867 -15.77137 -15.65151 -15.26543 -14.69808 -14.63325 -14.46796 -14.23386 -13.82985 -13.77482 -13.43393 -13.30156 -13.15627 -12.88418 -12.79509 -12.51742 -12.28759 -11.97011 -11.88042 -11.61894 -11.00720 -10.94491 -10.76125 -10.54979 -10.42742 -10.26003 -10.14968 -9.99561 -9.72386 -9.65535 -9.34832 -8.79569 -8.57391 -8.31623 -6.86674 -5.77051 -3.09260 0.59058 0.85285 2.16640 2.65334 2.90301 3.32703 3.35867 3.42787 3.44707 3.64321 4.10447 4.30099 4.46238 4.50589 4.56301 4.84473 4.93759 4.99936 5.01235 5.14791 5.25529 5.39921 5.43394 5.46867 5.52033 5.73274 5.79005 5.79298 5.88067 5.93405 6.08026 6.15990 6.32792 6.44144 6.46539 6.61923 6.67391 6.97872 6.98978 7.47650 7.50910 7.71883 7.74494 7.78215 8.19696 8.42595 9.17726 9.77318 10.42906 11.35007 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.003908 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.320377 B = 7162.938302 C = 9229.052259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.513 3.487 3 O -0.528 6.528 4 N -0.672 5.672 5 C 0.123 3.877 6 C -0.070 4.070 7 C -0.148 4.148 8 C 0.145 3.855 9 F -0.115 7.115 10 C -0.147 4.147 11 C 0.556 3.444 12 O -0.531 6.531 13 N -0.696 5.696 14 C 0.128 3.872 15 H 0.093 0.907 16 C -0.154 4.154 17 C 0.176 3.824 18 N -0.604 5.604 19 C -0.222 4.222 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.924 5.924 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.124 3.876 28 C -0.080 4.080 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.416 0.584 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.401 0.599 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.251 0.749 41 H 0.030 0.970 42 H 0.043 0.957 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 7.258 -17.182 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.302 3.698 3 O -0.404 6.404 4 N -0.319 5.319 5 C 0.029 3.971 6 C -0.090 4.090 7 C -0.167 4.167 8 C 0.124 3.876 9 F -0.093 7.093 10 C -0.152 4.152 11 C 0.342 3.658 12 O -0.409 6.409 13 N -0.346 5.346 14 C 0.023 3.977 15 H 0.111 0.889 16 C -0.192 4.192 17 C 0.051 3.949 18 N -0.331 5.331 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.003 4.003 28 C -0.101 4.101 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.252 0.748 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.349 7.987 -16.951 18.885 hybrid contribution -1.073 -0.152 0.974 1.457 sum -3.422 7.835 -15.976 18.120 Atomic orbital electron populations 1.21938 0.90326 1.06141 1.04911 1.21066 0.91053 0.82947 0.74780 1.90731 1.70515 1.31303 1.47819 1.43572 1.04709 1.10358 1.73224 1.17559 0.83102 0.97377 0.99042 1.21267 0.92526 0.98196 0.97008 1.21041 0.94754 0.99065 1.01878 1.17683 0.77690 0.94698 0.97503 1.91589 1.27931 1.95896 1.93868 1.19909 0.93440 0.97918 1.03901 1.17873 0.87032 0.81583 0.79263 1.90816 1.13089 1.75837 1.61151 1.45716 1.10492 1.25499 1.52942 1.22188 0.96029 0.86569 0.92961 0.88931 1.23233 0.99380 0.95890 1.00734 1.21171 0.92631 0.93081 0.88011 1.44498 1.15380 1.46120 1.27117 1.19126 0.99458 1.17474 0.99010 0.90480 1.24754 0.97256 0.99263 0.99185 1.69960 1.14222 1.33416 1.39675 0.86063 0.78912 0.78210 0.82745 1.20532 1.21842 1.21748 1.21959 0.89595 0.98415 0.90328 1.21009 0.92804 0.99358 0.96897 0.88623 0.88480 0.88939 0.74797 0.83146 0.83705 0.76376 0.91607 0.90795 0.93682 0.93698 0.93901 0.95253 0.93858 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.32 36.01 0.37 -0.49 16 2 C 0.51 4.66 7.78 -10.98 -0.09 4.57 16 3 O -0.53 -6.92 14.53 5.55 0.08 -6.84 16 4 N -0.67 -5.47 5.34 -9.88 -0.05 -5.52 16 5 C 0.12 1.33 6.29 -83.71 -0.53 0.81 16 6 C -0.07 -0.78 8.69 -39.33 -0.34 -1.12 16 7 C -0.15 -1.69 10.00 -39.59 -0.40 -2.09 16 8 C 0.15 2.07 7.28 -38.95 -0.28 1.79 16 9 F -0.11 -1.87 15.54 2.25 0.03 -1.83 16 10 C -0.15 -2.13 5.88 -104.93 -0.62 -2.74 16 11 C 0.56 9.56 7.77 -12.39 -0.10 9.47 16 12 O -0.53 -10.83 14.97 5.30 0.08 -10.75 16 13 N -0.70 -11.38 5.14 -52.71 -0.27 -11.65 16 14 C 0.13 2.26 3.43 -65.78 -0.23 2.03 16 15 H 0.09 1.60 7.54 -51.93 -0.39 1.21 16 16 C -0.15 -2.61 6.55 -24.90 -0.16 -2.78 16 17 C 0.18 3.94 5.36 -3.06 -0.02 3.93 16 18 N -0.60 -14.88 3.39 -170.07 -0.58 -15.45 16 19 C -0.22 -6.09 10.28 -15.06 -0.15 -6.24 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -25.94 10.31 55.49 0.57 -25.37 16 23 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.12 2.63 6.93 -2.53 -0.02 2.61 16 28 C -0.08 -0.93 9.45 -38.99 -0.37 -1.30 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.42 2.03 8.82 -40.82 -0.36 1.67 16 33 H 0.15 1.65 6.23 -52.49 -0.33 1.32 16 34 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.40 5.98 6.70 -40.82 -0.27 5.70 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 1.08 7.38 -51.93 -0.38 0.70 16 39 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 40 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.14 1.44 6.40 -52.49 -0.34 1.10 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -34.94 363.34 -8.09 -43.03 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.39 Total: 4.07 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -3.02 Total: 8.11 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.33 Total: -58.00 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.16 Total: -17.59 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.03 Total: -1.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.94 -8.09 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016381018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.626 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds