Wall clock time and date at job start Tue Mar 31 2020 18:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21293 * 120.00380 * 2 1 4 4 N 1.34775 * 120.00258 * 180.02562 * 2 1 3 5 5 C 1.40068 * 120.00725 * 185.52900 * 4 2 1 6 6 C 1.38475 * 120.00420 * 24.81671 * 5 4 2 7 7 C 1.39572 * 119.80597 * 180.32181 * 6 5 4 8 8 C 1.47733 * 120.08713 * 179.97438 * 7 6 5 9 9 O 1.21569 * 120.00594 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99970 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00010 * 180.02562 * 10 8 7 12 12 H 1.08991 * 110.88855 * 328.87785 * 11 10 8 13 13 C 1.55158 * 111.00299 * 204.99909 * 11 10 8 14 14 C 1.54324 * 102.94329 * 277.42929 * 13 11 10 15 15 N 1.47021 * 107.27118 * 337.80506 * 14 13 11 16 16 C 1.36935 * 125.64874 * 178.98722 * 15 14 13 17 17 H 1.08001 * 119.99718 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00133 * 359.97438 * 16 15 14 19 19 N 1.31625 * 120.00050 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00258 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47281 * 89.99800 * 20 18 16 22 22 H 1.48505 * 109.46994 * 210.00025 * 20 18 16 23 23 H 1.48501 * 109.46593 * 329.99796 * 20 18 16 24 24 C 1.47430 * 108.70200 * 358.94396 * 15 14 13 25 25 C 1.39658 * 119.82022 * 359.95450 * 7 6 5 26 26 C 1.37900 * 120.01384 * 0.02562 * 25 7 6 27 27 C 1.38498 * 120.19709 * 0.02562 * 26 25 7 28 28 F 1.35102 * 119.91368 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47248 * 239.99922 * 1 2 3 30 30 H 1.09002 * 109.47136 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47137 * 120.00151 * 1 2 3 32 32 H 0.97003 * 119.99809 * 5.52864 * 4 2 1 33 33 H 1.08003 * 120.09697 * 0.25532 * 6 5 4 34 34 H 0.96997 * 119.99849 * 0.02562 * 10 8 7 35 35 H 1.09000 * 110.71655 * 35.79013 * 13 11 10 36 36 H 1.08991 * 110.72200 * 158.88640 * 13 11 10 37 37 H 1.09002 * 109.88286 * 97.22755 * 14 13 11 38 38 H 1.08997 * 109.87914 * 218.38930 * 14 13 11 39 39 H 0.96992 * 120.00147 * 179.97438 * 19 18 16 40 40 H 1.09005 * 110.36137 * 265.28833 * 24 15 14 41 41 H 1.09002 * 110.36308 * 142.96623 * 24 15 14 42 42 H 1.07997 * 119.99161 * 180.02562 * 25 7 6 43 43 H 1.07999 * 119.90136 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1701 0.1163 6 6 4.2226 -0.1089 0.7280 7 6 5.6141 -0.1130 0.8362 8 6 6.3097 1.0162 1.4871 9 8 5.6700 1.9504 1.9297 10 7 7.6535 1.0106 1.5902 11 6 8.3433 2.1301 2.2361 12 1 7.7962 3.0611 2.0882 13 6 9.8023 2.2549 1.7231 14 6 10.5597 1.2186 2.5798 15 7 9.7629 0.9898 3.7940 16 6 10.0800 0.1225 4.8051 17 1 9.4261 0.0266 5.6592 18 6 11.2420 -0.6334 4.7322 19 7 12.0387 -0.5170 3.6909 20 14 11.6743 -1.8171 6.1111 21 1 11.0851 -3.1494 5.8228 22 1 13.1507 -1.9403 6.2130 23 1 11.1307 -1.3025 7.3936 24 6 8.5664 1.8497 3.7432 25 6 6.3471 -1.1877 0.3279 26 6 5.6962 -2.2408 -0.2794 27 6 4.3155 -2.2369 -0.3881 28 9 3.6837 -3.2714 -0.9847 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6992 -2.0052 -0.0818 33 1 3.6514 0.7200 1.1192 34 1 8.1640 0.2654 1.2367 35 1 9.8623 1.9988 0.6654 36 1 10.1878 3.2593 1.8977 37 1 10.6665 0.2862 2.0252 38 1 11.5420 1.6069 2.8487 39 1 12.8507 -1.0449 3.6401 40 1 8.7458 2.7813 4.2799 41 1 7.7064 1.3282 4.1634 42 1 7.4239 -1.1939 0.4105 43 1 6.2648 -3.0707 -0.6722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016381096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:07 Heat of formation + Delta-G solvation = -55.023037 kcal Electronic energy + Delta-G solvation = -28545.053522 eV Core-core repulsion = 24312.753505 eV Total energy + Delta-G solvation = -4232.300017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.25924 -40.86878 -39.76655 -38.22447 -37.06444 -35.18703 -33.77261 -31.99061 -31.32650 -30.77170 -29.23884 -28.78785 -27.21607 -24.69059 -23.86355 -23.49941 -21.04882 -20.84541 -20.10053 -19.78765 -18.68208 -17.73265 -17.35247 -16.93816 -16.67122 -16.23514 -15.96564 -15.62085 -15.43379 -14.67952 -14.62558 -14.51074 -14.17006 -13.90960 -13.79982 -13.47490 -13.25028 -13.12138 -12.89643 -12.83395 -12.55343 -12.26693 -11.93453 -11.84227 -11.73041 -10.98579 -10.92456 -10.89461 -10.71184 -10.37097 -10.13969 -10.12494 -9.95889 -9.68678 -9.67218 -9.07627 -8.74730 -8.53979 -8.41482 -6.82874 -5.73024 -3.05449 0.50291 0.95444 2.15423 2.54954 2.85356 3.38644 3.41034 3.44806 3.46417 3.74199 3.82182 4.25650 4.47067 4.49448 4.72971 4.79038 4.85095 4.89893 5.03554 5.17317 5.30301 5.39616 5.46223 5.47668 5.60367 5.77562 5.79594 5.84226 5.87701 5.98954 6.14883 6.21228 6.37512 6.49475 6.51290 6.61213 6.70162 6.89824 7.03922 7.52319 7.55293 7.67296 7.78416 7.85372 8.23762 8.48942 9.21294 9.81073 10.46934 11.38930 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.002864 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.199744 B = 9772.757378 C =10595.121894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.512 6.512 4 N -0.670 5.670 5 C 0.107 3.893 6 C -0.050 4.050 7 C -0.114 4.114 8 C 0.557 3.443 9 O -0.538 6.538 10 N -0.697 5.697 11 C 0.127 3.873 12 H 0.092 0.908 13 C -0.154 4.154 14 C 0.175 3.825 15 N -0.604 5.604 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.125 3.875 25 C -0.072 4.072 26 C -0.136 4.136 27 C 0.085 3.915 28 F -0.136 7.136 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.415 0.585 33 H 0.168 0.832 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.251 0.749 40 H 0.029 0.971 41 H 0.043 0.957 42 H 0.143 0.857 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.312 -3.533 -11.855 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.386 6.386 4 N -0.316 5.316 5 C 0.011 3.989 6 C -0.071 4.071 7 C -0.118 4.118 8 C 0.343 3.657 9 O -0.417 6.417 10 N -0.347 5.347 11 C 0.022 3.978 12 H 0.110 0.890 13 C -0.193 4.193 14 C 0.051 3.949 15 N -0.331 5.331 16 C -0.351 4.351 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.003 4.003 25 C -0.092 4.092 26 C -0.155 4.155 27 C 0.063 3.937 28 F -0.115 7.115 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.251 0.749 33 H 0.185 0.815 34 H 0.238 0.762 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.160 0.840 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.246 -2.237 -11.478 22.520 hybrid contribution 0.293 -1.871 0.398 1.935 sum -18.953 -4.108 -11.081 22.336 Atomic orbital electron populations 1.21926 0.90167 1.06299 1.04682 1.21111 0.91122 0.82875 0.75288 1.90789 1.70191 1.31125 1.46531 1.43484 1.04557 1.10565 1.73000 1.17600 0.83521 0.96256 1.01518 1.21416 0.93450 0.97812 0.94381 1.20013 0.93736 0.96052 1.02008 1.18003 0.82409 0.85863 0.79381 1.90773 1.65993 1.35995 1.48902 1.45750 1.05811 1.24098 1.59022 1.22184 0.92676 0.88809 0.94124 0.88961 1.23235 0.94276 1.01708 1.00068 1.21176 0.93153 0.94522 0.86076 1.44487 1.21423 1.46204 1.20974 1.19058 1.04522 1.13976 0.97591 0.90558 1.24769 0.97329 1.00282 0.98134 1.69948 1.14235 1.43862 1.29166 0.86129 0.77361 0.80965 0.81392 1.21685 1.21720 1.20749 1.21956 0.90979 0.94560 0.92760 1.21283 1.00765 0.91837 0.95310 1.20913 0.91541 1.00759 1.02294 1.17576 0.90758 0.86200 0.99193 1.91478 1.82361 1.56330 1.81338 0.88806 0.88238 0.89004 0.74901 0.81463 0.76214 0.91556 0.90838 0.93609 0.93722 0.93821 0.95317 0.93878 0.83969 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.32 36.00 0.37 -0.43 16 2 C 0.51 4.93 7.74 -10.99 -0.09 4.85 16 3 O -0.51 -7.49 14.25 5.55 0.08 -7.41 16 4 N -0.67 -5.97 5.31 -9.84 -0.05 -6.03 16 5 C 0.11 1.26 6.43 -83.64 -0.54 0.72 16 6 C -0.05 -0.72 8.25 -39.00 -0.32 -1.04 16 7 C -0.11 -1.67 5.87 -104.99 -0.62 -2.29 16 8 C 0.56 9.68 7.77 -12.38 -0.10 9.59 16 9 O -0.54 -11.05 15.98 5.31 0.08 -10.96 16 10 N -0.70 -11.67 5.14 -52.71 -0.27 -11.94 16 11 C 0.13 2.30 3.43 -65.78 -0.23 2.08 16 12 H 0.09 1.63 7.54 -51.93 -0.39 1.24 16 13 C -0.15 -2.71 6.55 -24.90 -0.16 -2.87 16 14 C 0.18 4.02 5.36 -3.06 -0.02 4.01 16 15 N -0.60 -15.02 3.39 -170.07 -0.58 -15.60 16 16 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -26.35 10.31 55.49 0.57 -25.77 16 20 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.12 2.66 6.93 -2.53 -0.02 2.64 16 25 C -0.07 -0.87 9.53 -39.18 -0.37 -1.24 16 26 C -0.14 -1.42 10.00 -39.61 -0.40 -1.82 16 27 C 0.08 0.92 7.31 -39.12 -0.29 0.64 16 28 F -0.14 -1.36 16.80 2.25 0.04 -1.32 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.41 2.31 8.45 -40.82 -0.34 1.97 16 33 H 0.17 2.79 5.38 -52.48 -0.28 2.50 16 34 H 0.40 6.21 6.69 -40.82 -0.27 5.94 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 38 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.14 1.52 6.39 -52.49 -0.34 1.19 16 43 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -34.66 363.85 -8.01 -42.67 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.33 Total: 5.80 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -3.01 Total: 8.17 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.33 Total: -59.34 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.16 Total: -18.37 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.66 -8.01 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016381096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.352 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds