Wall clock time and date at job start Tue Mar 31 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21293 * 120.00380 * 2 1 4 4 N 1.34775 * 120.00258 * 180.02562 * 2 1 3 5 5 C 1.40068 * 120.00725 * 185.52900 * 4 2 1 6 6 C 1.38475 * 120.00420 * 24.81671 * 5 4 2 7 7 C 1.39572 * 119.80597 * 180.32181 * 6 5 4 8 8 C 1.47733 * 120.08713 * 179.97438 * 7 6 5 9 9 O 1.21569 * 120.00594 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99970 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00010 * 180.02562 * 10 8 7 12 12 H 1.08991 * 110.88855 * 328.87785 * 11 10 8 13 13 C 1.55158 * 111.00299 * 204.99909 * 11 10 8 14 14 C 1.54324 * 102.94329 * 277.42929 * 13 11 10 15 15 N 1.47021 * 107.27118 * 337.80506 * 14 13 11 16 16 C 1.36935 * 125.64874 * 178.98722 * 15 14 13 17 17 H 1.08001 * 119.99718 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00133 * 359.97438 * 16 15 14 19 19 N 1.31625 * 120.00050 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00258 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47281 * 89.99800 * 20 18 16 22 22 H 1.48505 * 109.46994 * 210.00025 * 20 18 16 23 23 H 1.48501 * 109.46593 * 329.99796 * 20 18 16 24 24 C 1.47430 * 108.70200 * 358.94396 * 15 14 13 25 25 C 1.39658 * 119.82022 * 359.95450 * 7 6 5 26 26 C 1.37900 * 120.01384 * 0.02562 * 25 7 6 27 27 C 1.38498 * 120.19709 * 0.02562 * 26 25 7 28 28 F 1.35102 * 119.91368 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47248 * 239.99922 * 1 2 3 30 30 H 1.09002 * 109.47136 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47137 * 120.00151 * 1 2 3 32 32 H 0.97003 * 119.99809 * 5.52864 * 4 2 1 33 33 H 1.08003 * 120.09697 * 0.25532 * 6 5 4 34 34 H 0.96997 * 119.99849 * 0.02562 * 10 8 7 35 35 H 1.09000 * 110.71655 * 35.79013 * 13 11 10 36 36 H 1.08991 * 110.72200 * 158.88640 * 13 11 10 37 37 H 1.09002 * 109.88286 * 97.22755 * 14 13 11 38 38 H 1.08997 * 109.87914 * 218.38930 * 14 13 11 39 39 H 0.96992 * 120.00147 * 179.97438 * 19 18 16 40 40 H 1.09005 * 110.36137 * 265.28833 * 24 15 14 41 41 H 1.09002 * 110.36308 * 142.96623 * 24 15 14 42 42 H 1.07997 * 119.99161 * 180.02562 * 25 7 6 43 43 H 1.07999 * 119.90136 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1701 0.1163 6 6 4.2226 -0.1089 0.7280 7 6 5.6141 -0.1130 0.8362 8 6 6.3097 1.0162 1.4871 9 8 5.6700 1.9504 1.9297 10 7 7.6535 1.0106 1.5902 11 6 8.3433 2.1301 2.2361 12 1 7.7962 3.0611 2.0882 13 6 9.8023 2.2549 1.7231 14 6 10.5597 1.2186 2.5798 15 7 9.7629 0.9898 3.7940 16 6 10.0800 0.1225 4.8051 17 1 9.4261 0.0266 5.6592 18 6 11.2420 -0.6334 4.7322 19 7 12.0387 -0.5170 3.6909 20 14 11.6743 -1.8171 6.1111 21 1 11.0851 -3.1494 5.8228 22 1 13.1507 -1.9403 6.2130 23 1 11.1307 -1.3025 7.3936 24 6 8.5664 1.8497 3.7432 25 6 6.3471 -1.1877 0.3279 26 6 5.6962 -2.2408 -0.2794 27 6 4.3155 -2.2369 -0.3881 28 9 3.6837 -3.2714 -0.9847 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6992 -2.0052 -0.0818 33 1 3.6514 0.7200 1.1192 34 1 8.1640 0.2654 1.2367 35 1 9.8623 1.9988 0.6654 36 1 10.1878 3.2593 1.8977 37 1 10.6665 0.2862 2.0252 38 1 11.5420 1.6069 2.8487 39 1 12.8507 -1.0449 3.6401 40 1 8.7458 2.7813 4.2799 41 1 7.7064 1.3282 4.1634 42 1 7.4239 -1.1939 0.4105 43 1 6.2648 -3.0707 -0.6722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016381096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:06 Heat of formation + Delta-G solvation = -79.277121 kcal Electronic energy + Delta-G solvation = -28546.105258 eV Core-core repulsion = 24312.753505 eV Total energy + Delta-G solvation = -4233.351753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.11065 -41.81184 -40.99837 -39.41444 -38.58896 -36.09729 -35.44999 -33.72668 -32.13244 -31.89060 -30.90993 -29.63221 -28.85090 -26.52739 -25.11400 -24.41229 -22.30742 -21.87310 -21.75672 -21.25417 -19.71790 -18.91132 -18.60712 -18.23216 -17.67336 -17.43460 -17.07166 -16.67536 -16.51560 -16.27957 -16.06626 -15.73323 -15.56180 -15.30169 -14.91608 -14.70095 -14.32754 -14.12166 -13.97352 -13.82516 -13.63055 -13.55102 -13.43905 -13.06447 -12.89394 -12.78977 -12.69460 -12.30199 -12.11298 -12.01135 -11.84389 -11.80125 -11.59186 -11.10633 -10.98756 -10.70646 -10.21295 -9.96776 -9.33116 -8.85003 -7.83626 -5.17703 -0.50940 0.00498 1.34692 1.47293 1.48110 1.56857 1.72461 1.83403 2.12009 2.50398 2.61825 2.89721 3.35042 3.48579 3.60321 3.68033 3.72059 3.82013 3.95422 4.03137 4.07683 4.28664 4.32416 4.47914 4.62248 4.66093 4.68371 4.73547 4.81890 4.88756 4.93947 4.99945 5.04271 5.05443 5.12313 5.16983 5.45923 5.52564 5.67329 5.69612 5.78481 6.21388 6.23423 6.50539 6.97263 7.13264 7.13896 7.78197 8.42726 9.26270 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.002864 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.199744 B = 9772.757378 C =10595.121894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.501 3.499 3 O -0.568 6.568 4 N -0.660 5.660 5 C 0.105 3.895 6 C -0.068 4.068 7 C -0.133 4.133 8 C 0.556 3.444 9 O -0.577 6.577 10 N -0.691 5.691 11 C 0.139 3.861 12 H 0.102 0.898 13 C -0.134 4.134 14 C 0.184 3.816 15 N -0.620 5.620 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.058 4.058 19 N -0.945 5.945 20 Si 0.973 3.027 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.276 1.276 24 C 0.122 3.878 25 C -0.069 4.069 26 C -0.125 4.125 27 C 0.096 3.904 28 F -0.125 7.125 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.432 0.568 33 H 0.140 0.860 34 H 0.409 0.591 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.025 0.975 38 H 0.010 0.990 39 H 0.248 0.752 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.155 0.845 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.483 -5.369 -13.075 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.292 3.708 3 O -0.447 6.447 4 N -0.307 5.307 5 C 0.008 3.992 6 C -0.089 4.089 7 C -0.137 4.137 8 C 0.345 3.655 9 O -0.459 6.459 10 N -0.342 5.342 11 C 0.033 3.967 12 H 0.120 0.880 13 C -0.172 4.172 14 C 0.059 3.941 15 N -0.347 5.347 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.251 4.251 19 N -0.594 5.594 20 Si 0.802 3.198 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.202 1.202 24 C -0.004 4.004 25 C -0.088 4.088 26 C -0.144 4.144 27 C 0.073 3.927 28 F -0.104 7.104 29 H 0.136 0.864 30 H 0.113 0.887 31 H 0.140 0.860 32 H 0.272 0.728 33 H 0.158 0.842 34 H 0.246 0.754 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.043 0.957 38 H 0.028 0.972 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.173 0.827 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -20.455 -4.114 -12.714 24.433 hybrid contribution 0.585 -1.343 0.774 1.657 sum -19.870 -5.457 -11.941 23.815 Atomic orbital electron populations 1.21975 0.85912 1.06877 1.07204 1.22112 0.93051 0.82031 0.73566 1.90778 1.71641 1.33112 1.49127 1.43526 1.03513 1.11463 1.72183 1.17624 0.84994 0.95711 1.00850 1.21215 0.93465 0.98268 0.95938 1.19834 0.93871 0.96277 1.03717 1.18443 0.82317 0.86087 0.78668 1.90743 1.66718 1.37708 1.50695 1.45690 1.05787 1.24037 1.58641 1.22014 0.93274 0.89610 0.91832 0.88020 1.23098 0.92605 1.00950 1.00563 1.20975 0.92295 0.94905 0.85919 1.44702 1.22679 1.46221 1.21054 1.19326 1.04688 1.14631 0.98318 0.91026 1.25502 0.97320 1.01922 1.00377 1.70135 1.14280 1.44448 1.30521 0.85158 0.76652 0.79006 0.78972 1.21084 1.21953 1.20175 1.22052 0.89222 0.93809 0.95336 1.21392 1.01275 0.91285 0.94874 1.21235 0.91501 1.00803 1.00850 1.17562 0.90929 0.85853 0.98313 1.91513 1.82230 1.55678 1.80970 0.86381 0.88717 0.86012 0.72796 0.84204 0.75355 0.88624 0.89051 0.95708 0.97150 0.94278 0.94957 0.95453 0.82710 0.80348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 10.32 71.23 0.74 -0.44 16 2 C 0.50 9.48 7.74 87.66 0.68 10.16 16 3 O -0.57 -17.36 14.25 -3.07 -0.04 -17.41 16 4 N -0.66 -10.88 5.31 -303.43 -1.61 -12.49 16 5 C 0.10 2.39 6.43 38.12 0.25 2.63 16 6 C -0.07 -2.01 8.25 22.65 0.19 -1.83 16 7 C -0.13 -3.93 5.87 -20.10 -0.12 -4.05 16 8 C 0.56 19.74 7.77 86.75 0.67 20.41 16 9 O -0.58 -24.64 15.98 -3.93 -0.06 -24.70 16 10 N -0.69 -22.99 5.14 -438.93 -2.26 -25.25 16 11 C 0.14 4.93 3.43 46.38 0.16 5.09 16 12 H 0.10 3.52 7.54 -2.39 -0.02 3.50 16 13 C -0.13 -4.51 6.55 31.78 0.21 -4.30 16 14 C 0.18 8.49 5.36 86.73 0.47 8.95 16 15 N -0.62 -31.26 3.39 -691.97 -2.35 -33.61 16 16 C -0.24 -13.43 10.28 84.03 0.86 -12.57 16 17 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.06 -3.22 5.49 84.86 0.47 -2.75 16 19 N -0.94 -54.58 10.31 21.65 0.22 -54.35 16 20 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.12 5.28 6.93 86.85 0.60 5.88 16 25 C -0.07 -1.55 9.53 22.53 0.21 -1.33 16 26 C -0.13 -2.27 10.00 22.25 0.22 -2.05 16 27 C 0.10 1.85 7.31 22.57 0.17 2.02 16 28 F -0.13 -2.08 16.80 44.97 0.76 -1.32 16 29 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.43 3.74 8.45 -92.71 -0.78 2.96 16 33 H 0.14 5.02 5.38 -2.91 -0.02 5.00 16 34 H 0.41 12.34 6.69 -92.71 -0.62 11.72 16 35 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.02 1.24 7.38 -2.39 -0.02 1.22 16 38 H 0.01 0.54 7.51 -2.39 -0.02 0.52 16 39 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.16 3.03 6.39 -2.91 -0.02 3.02 16 43 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -78.53 363.85 2.13 -76.40 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.32 Total: 19.64 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 5.77 Total: 25.83 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -5.99 Total: -125.70 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.11 Total: -42.11 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.76 Total: -1.32 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -78.53 2.13 -76.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016381096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.880 kcal (2) G-P(sol) polarization free energy of solvation -78.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds