Wall clock time and date at job start Tue Mar 31 2020 18:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21292 * 120.00043 * 2 1 4 4 N 1.34778 * 119.99918 * 179.97438 * 2 1 3 5 5 C 1.40083 * 119.99968 * 175.52723 * 4 2 1 6 6 C 1.38461 * 120.00563 * 34.67572 * 5 4 2 7 7 C 1.39577 * 119.80692 * 179.77340 * 6 5 4 8 8 C 1.47734 * 120.09318 * 180.27170 * 7 6 5 9 9 O 1.21572 * 119.99759 * 0.18944 * 8 7 6 10 10 N 1.34774 * 120.00128 * 180.18179 * 8 7 6 11 11 C 1.46502 * 120.00084 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88547 * 31.12612 * 11 10 8 13 13 C 1.55159 * 111.00225 * 155.00150 * 11 10 8 14 14 C 1.54317 * 102.93952 * 153.57711 * 13 11 10 15 15 N 1.47016 * 107.27635 * 337.80924 * 14 13 11 16 16 C 1.36940 * 125.65340 * 178.98348 * 15 14 13 17 17 H 1.07995 * 120.00243 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99906 * 359.97438 * 16 15 14 19 19 N 1.31619 * 119.99695 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00083 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47211 * 89.99633 * 20 18 16 22 22 H 1.48500 * 109.46984 * 210.00087 * 20 18 16 23 23 H 1.48505 * 109.46941 * 329.99565 * 20 18 16 24 24 C 1.47427 * 108.70103 * 358.94131 * 15 14 13 25 25 C 1.39664 * 119.81627 * 0.45674 * 7 6 5 26 26 C 1.37900 * 120.01193 * 359.81650 * 25 7 6 27 27 C 1.38506 * 120.19750 * 359.95284 * 26 25 7 28 28 F 1.35099 * 119.90793 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.47170 * 270.00065 * 1 2 3 30 30 H 1.09001 * 109.47285 * 30.00167 * 1 2 3 31 31 H 1.09007 * 109.47407 * 150.00044 * 1 2 3 32 32 H 0.96996 * 119.99925 * 355.53554 * 4 2 1 33 33 H 1.08006 * 120.10012 * 359.97438 * 6 5 4 34 34 H 0.97008 * 119.99964 * 0.02562 * 10 8 7 35 35 H 1.09000 * 110.72294 * 271.94595 * 13 11 10 36 36 H 1.09004 * 110.71942 * 35.21917 * 13 11 10 37 37 H 1.08999 * 109.88125 * 97.22885 * 14 13 11 38 38 H 1.09005 * 109.88276 * 218.38848 * 14 13 11 39 39 H 0.97002 * 119.99949 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.36605 * 265.29134 * 24 15 14 41 41 H 1.08998 * 110.36886 * 142.97000 * 24 15 14 42 42 H 1.07998 * 119.99026 * 179.79905 * 25 7 6 43 43 H 1.08006 * 119.89855 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5784 -1.1691 -0.0941 6 6 4.3141 -0.1579 0.5003 7 6 5.7067 -0.1664 0.4075 8 6 6.4982 0.9062 1.0445 9 8 5.9367 1.7961 1.6535 10 7 7.8426 0.8981 0.9506 11 6 8.6274 1.9621 1.5818 12 1 8.1302 2.3319 2.4785 13 6 10.0654 1.4762 1.9035 14 6 10.8840 2.7843 1.8867 15 7 10.1317 3.7598 1.0844 16 6 10.5089 5.0536 0.8412 17 1 9.8841 5.6936 0.2360 18 6 11.6944 5.5425 1.3727 19 7 12.4557 4.7626 2.1107 20 14 12.2094 7.3070 1.0404 21 1 11.6598 8.1909 2.0996 22 1 13.6916 7.3982 1.0392 23 1 11.6861 7.7347 -0.2820 24 6 8.9043 3.1143 0.5841 25 6 6.3498 -1.1897 -0.2925 26 6 5.6094 -2.1900 -0.8864 27 6 4.2277 -2.1847 -0.7906 28 9 3.5082 -3.1679 -1.3743 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6980 -2.0059 0.0663 33 1 3.8119 0.6336 1.0371 34 1 8.2906 0.1882 0.4644 35 1 10.1037 1.0098 2.8879 36 1 10.4210 0.7889 1.1359 37 1 11.0077 3.1572 2.9034 38 1 11.8593 2.6055 1.4341 39 1 13.2843 5.1041 2.4818 40 1 9.0659 2.7176 -0.4182 41 1 8.0761 3.8229 0.5836 42 1 7.4270 -1.1973 -0.3688 43 1 6.1086 -2.9802 -1.4277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016381097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:10 Heat of formation + Delta-G solvation = -54.977850 kcal Electronic energy + Delta-G solvation = -28019.677369 eV Core-core repulsion = 23787.379312 eV Total energy + Delta-G solvation = -4232.298058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.38826 -40.92186 -39.85020 -38.29827 -37.09983 -35.26794 -34.06726 -32.03402 -31.42645 -30.92670 -29.24393 -28.86779 -27.09133 -24.76454 -23.75827 -23.60891 -21.13614 -20.82704 -20.38373 -19.92331 -18.74098 -17.79735 -17.49137 -17.00278 -16.84874 -16.28827 -16.00354 -15.74559 -15.49682 -14.77965 -14.64358 -14.54946 -14.22515 -14.06059 -13.99801 -13.60778 -13.21586 -13.09364 -12.86545 -12.81046 -12.49424 -12.40541 -12.19292 -11.91194 -11.77181 -11.02494 -10.91515 -10.87544 -10.73974 -10.36508 -10.24493 -10.08200 -9.89368 -9.79555 -9.66171 -9.22571 -8.77680 -8.62549 -8.56595 -6.81636 -5.69077 -3.02402 0.34852 0.80218 2.08808 2.47743 2.70042 3.24194 3.43890 3.48774 3.50652 3.57378 3.69040 4.21783 4.31410 4.51228 4.59742 4.66074 4.68766 4.88008 4.90677 5.04811 5.26445 5.35092 5.44301 5.47567 5.61270 5.65879 5.69425 5.75461 5.81053 5.86953 5.98844 6.19592 6.32486 6.42558 6.46395 6.59229 6.72927 6.82049 6.98256 7.55304 7.59456 7.63199 7.67341 7.83795 8.26582 8.35486 9.24426 9.84163 10.48972 11.42935 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.002300 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.729092 B =12169.117101 C =13096.420757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.508 3.492 3 O -0.513 6.513 4 N -0.673 5.673 5 C 0.104 3.896 6 C -0.039 4.039 7 C -0.118 4.118 8 C 0.555 3.445 9 O -0.527 6.527 10 N -0.709 5.709 11 C 0.127 3.873 12 H 0.099 0.901 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.225 4.225 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.128 3.872 25 C -0.072 4.072 26 C -0.140 4.140 27 C 0.091 3.909 28 F -0.135 7.135 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.414 0.586 33 H 0.164 0.836 34 H 0.396 0.604 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.020 0.980 41 H 0.044 0.956 42 H 0.141 0.859 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.587 -21.040 -4.981 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.386 6.386 4 N -0.320 5.320 5 C 0.009 3.991 6 C -0.060 4.060 7 C -0.122 4.122 8 C 0.341 3.659 9 O -0.404 6.404 10 N -0.360 5.360 11 C 0.022 3.978 12 H 0.117 0.883 13 C -0.188 4.188 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.001 3.999 25 C -0.092 4.092 26 C -0.159 4.159 27 C 0.069 3.931 28 F -0.113 7.113 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.251 0.749 33 H 0.181 0.819 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.159 0.841 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.468 -19.471 -4.511 28.608 hybrid contribution 0.211 -0.193 -0.574 0.642 sum -20.257 -19.663 -5.085 28.685 Atomic orbital electron populations 1.21887 0.90124 1.05489 1.05371 1.21141 0.91126 0.82917 0.75184 1.90830 1.70183 1.31017 1.46612 1.43515 1.04216 1.10529 1.73762 1.17579 0.83774 0.97272 1.00474 1.21360 0.92189 0.97287 0.95128 1.20038 0.93787 0.96766 1.01574 1.18048 0.82389 0.85013 0.80460 1.90825 1.70667 1.36918 1.41965 1.45917 1.05763 1.28686 1.55666 1.22367 0.90997 0.87411 0.97044 0.88304 1.23192 0.94380 1.00554 1.00695 1.21151 0.92905 0.83844 0.96707 1.44392 1.20018 1.09561 1.59093 1.19083 1.03566 0.86046 1.26677 0.90359 1.24803 0.97338 0.98391 1.00000 1.69946 1.14354 1.34548 1.38354 0.86089 0.77496 0.84164 0.77855 1.21559 1.21696 1.20687 1.21832 0.90484 0.93136 0.94449 1.21222 1.00500 0.92366 0.95092 1.20910 0.91056 1.01159 1.02816 1.17674 0.89924 0.88272 0.97187 1.91490 1.77962 1.59906 1.81976 0.88223 0.88149 0.89811 0.74910 0.81869 0.76868 0.91517 0.92023 0.93202 0.93538 0.93757 0.96202 0.93775 0.84141 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.31 36.00 0.37 -0.35 16 2 C 0.51 4.64 7.78 -10.99 -0.09 4.56 16 3 O -0.51 -7.37 14.51 5.55 0.08 -7.29 16 4 N -0.67 -5.28 5.22 -9.84 -0.05 -5.33 16 5 C 0.10 1.08 6.31 -83.64 -0.53 0.55 16 6 C -0.04 -0.51 8.24 -39.00 -0.32 -0.83 16 7 C -0.12 -1.48 5.87 -104.99 -0.62 -2.10 16 8 C 0.55 8.81 7.77 -12.38 -0.10 8.72 16 9 O -0.53 -10.67 15.98 5.30 0.08 -10.58 16 10 N -0.71 -10.30 5.15 -52.71 -0.27 -10.57 16 11 C 0.13 2.33 3.42 -65.78 -0.23 2.10 16 12 H 0.10 2.02 7.54 -51.93 -0.39 1.62 16 13 C -0.15 -2.66 6.60 -24.90 -0.16 -2.82 16 14 C 0.18 4.31 5.37 -3.07 -0.02 4.29 16 15 N -0.60 -15.81 3.39 -170.08 -0.58 -16.39 16 16 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.34 10.31 55.49 0.57 -26.77 16 20 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.13 2.82 6.93 -2.53 -0.02 2.81 16 25 C -0.07 -0.65 9.53 -39.17 -0.37 -1.02 16 26 C -0.14 -1.11 10.00 -39.61 -0.40 -1.51 16 27 C 0.09 0.83 7.31 -39.12 -0.29 0.54 16 28 F -0.13 -1.13 16.95 2.25 0.04 -1.09 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.41 1.81 8.66 -40.82 -0.35 1.45 16 33 H 0.16 2.54 5.78 -52.48 -0.30 2.24 16 34 H 0.40 4.35 6.59 -40.82 -0.27 4.08 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 37 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 38 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.14 0.91 6.39 -52.49 -0.34 0.57 16 43 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -36.72 364.51 -8.01 -44.73 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.35 Total: 2.30 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -3.01 Total: 7.95 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.33 Total: -59.05 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.17 Total: -17.87 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.72 -8.01 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016381097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.249 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds