Wall clock time and date at job start Tue Mar 31 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21292 * 120.00043 * 2 1 4 4 N 1.34778 * 119.99918 * 179.97438 * 2 1 3 5 5 C 1.40083 * 119.99968 * 175.52723 * 4 2 1 6 6 C 1.38461 * 120.00563 * 34.67572 * 5 4 2 7 7 C 1.39577 * 119.80692 * 179.77340 * 6 5 4 8 8 C 1.47734 * 120.09318 * 180.27170 * 7 6 5 9 9 O 1.21572 * 119.99759 * 0.18944 * 8 7 6 10 10 N 1.34774 * 120.00128 * 180.18179 * 8 7 6 11 11 C 1.46502 * 120.00084 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88547 * 31.12612 * 11 10 8 13 13 C 1.55159 * 111.00225 * 155.00150 * 11 10 8 14 14 C 1.54317 * 102.93952 * 153.57711 * 13 11 10 15 15 N 1.47016 * 107.27635 * 337.80924 * 14 13 11 16 16 C 1.36940 * 125.65340 * 178.98348 * 15 14 13 17 17 H 1.07995 * 120.00243 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99906 * 359.97438 * 16 15 14 19 19 N 1.31619 * 119.99695 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00083 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47211 * 89.99633 * 20 18 16 22 22 H 1.48500 * 109.46984 * 210.00087 * 20 18 16 23 23 H 1.48505 * 109.46941 * 329.99565 * 20 18 16 24 24 C 1.47427 * 108.70103 * 358.94131 * 15 14 13 25 25 C 1.39664 * 119.81627 * 0.45674 * 7 6 5 26 26 C 1.37900 * 120.01193 * 359.81650 * 25 7 6 27 27 C 1.38506 * 120.19750 * 359.95284 * 26 25 7 28 28 F 1.35099 * 119.90793 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.47170 * 270.00065 * 1 2 3 30 30 H 1.09001 * 109.47285 * 30.00167 * 1 2 3 31 31 H 1.09007 * 109.47407 * 150.00044 * 1 2 3 32 32 H 0.96996 * 119.99925 * 355.53554 * 4 2 1 33 33 H 1.08006 * 120.10012 * 359.97438 * 6 5 4 34 34 H 0.97008 * 119.99964 * 0.02562 * 10 8 7 35 35 H 1.09000 * 110.72294 * 271.94595 * 13 11 10 36 36 H 1.09004 * 110.71942 * 35.21917 * 13 11 10 37 37 H 1.08999 * 109.88125 * 97.22885 * 14 13 11 38 38 H 1.09005 * 109.88276 * 218.38848 * 14 13 11 39 39 H 0.97002 * 119.99949 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.36605 * 265.29134 * 24 15 14 41 41 H 1.08998 * 110.36886 * 142.97000 * 24 15 14 42 42 H 1.07998 * 119.99026 * 179.79905 * 25 7 6 43 43 H 1.08006 * 119.89855 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5784 -1.1691 -0.0941 6 6 4.3141 -0.1579 0.5003 7 6 5.7067 -0.1664 0.4075 8 6 6.4982 0.9062 1.0445 9 8 5.9367 1.7961 1.6535 10 7 7.8426 0.8981 0.9506 11 6 8.6274 1.9621 1.5818 12 1 8.1302 2.3319 2.4785 13 6 10.0654 1.4762 1.9035 14 6 10.8840 2.7843 1.8867 15 7 10.1317 3.7598 1.0844 16 6 10.5089 5.0536 0.8412 17 1 9.8841 5.6936 0.2360 18 6 11.6944 5.5425 1.3727 19 7 12.4557 4.7626 2.1107 20 14 12.2094 7.3070 1.0404 21 1 11.6598 8.1909 2.0996 22 1 13.6916 7.3982 1.0392 23 1 11.6861 7.7347 -0.2820 24 6 8.9043 3.1143 0.5841 25 6 6.3498 -1.1897 -0.2925 26 6 5.6094 -2.1900 -0.8864 27 6 4.2277 -2.1847 -0.7906 28 9 3.5082 -3.1679 -1.3743 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6980 -2.0059 0.0663 33 1 3.8119 0.6336 1.0371 34 1 8.2906 0.1882 0.4644 35 1 10.1037 1.0098 2.8879 36 1 10.4210 0.7889 1.1359 37 1 11.0077 3.1572 2.9034 38 1 11.8593 2.6055 1.4341 39 1 13.2843 5.1041 2.4818 40 1 9.0659 2.7176 -0.4182 41 1 8.0761 3.8229 0.5836 42 1 7.4270 -1.1973 -0.3688 43 1 6.1086 -2.9802 -1.4277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016381097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:09 Heat of formation + Delta-G solvation = -82.108178 kcal Electronic energy + Delta-G solvation = -28020.853829 eV Core-core repulsion = 23787.379312 eV Total energy + Delta-G solvation = -4233.474517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.08510 -41.77495 -40.98384 -39.40404 -38.64246 -36.10263 -35.66733 -33.85152 -32.11498 -31.93282 -30.93437 -29.64930 -28.74099 -26.59122 -24.94379 -24.37859 -22.31331 -21.99235 -21.82178 -21.44576 -19.69115 -18.95232 -18.61030 -18.22530 -17.72844 -17.43244 -17.03820 -16.69909 -16.58482 -16.23529 -16.11277 -15.79540 -15.63861 -15.24899 -14.81441 -14.59895 -14.33801 -14.16677 -14.00974 -13.95998 -13.71912 -13.52404 -13.44965 -13.08545 -12.96735 -12.78154 -12.67054 -12.43891 -12.13399 -12.04203 -11.82882 -11.71831 -11.58392 -11.13917 -11.03556 -10.72933 -10.25073 -9.97234 -9.39657 -8.93033 -7.87685 -5.23708 -0.49924 0.02648 1.36247 1.44592 1.47131 1.55565 1.67791 1.83269 2.05804 2.48967 2.60721 2.93185 3.30679 3.49202 3.59067 3.67102 3.73391 3.86348 3.97111 4.03453 4.05175 4.19563 4.32505 4.46342 4.58207 4.61063 4.70055 4.72104 4.83932 4.85928 4.93761 4.99233 5.04113 5.06295 5.12657 5.19823 5.40978 5.47483 5.64489 5.69257 5.73520 6.17731 6.24329 6.49706 6.99962 7.08347 7.15533 7.73279 8.36504 9.22334 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.002300 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.729092 B =12169.117101 C =13096.420757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.501 3.499 3 O -0.575 6.575 4 N -0.662 5.662 5 C 0.095 3.905 6 C -0.061 4.061 7 C -0.136 4.136 8 C 0.554 3.446 9 O -0.582 6.582 10 N -0.690 5.690 11 C 0.144 3.856 12 H 0.074 0.926 13 C -0.126 4.126 14 C 0.183 3.817 15 N -0.626 5.626 16 C -0.248 4.248 17 H 0.075 0.925 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.980 3.020 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.271 1.271 24 C 0.127 3.873 25 C -0.057 4.057 26 C -0.126 4.126 27 C 0.102 3.898 28 F -0.126 7.126 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.432 0.568 33 H 0.127 0.873 34 H 0.418 0.582 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.013 0.987 38 H 0.021 0.979 39 H 0.249 0.751 40 H 0.036 0.964 41 H 0.020 0.980 42 H 0.174 0.826 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.134 -24.371 -6.695 32.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.292 3.708 3 O -0.453 6.453 4 N -0.310 5.310 5 C 0.000 4.000 6 C -0.082 4.082 7 C -0.140 4.140 8 C 0.343 3.657 9 O -0.463 6.463 10 N -0.343 5.343 11 C 0.038 3.962 12 H 0.092 0.908 13 C -0.164 4.164 14 C 0.058 3.942 15 N -0.353 5.353 16 C -0.377 4.377 17 H 0.093 0.907 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.808 3.192 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.196 1.196 24 C 0.000 4.000 25 C -0.076 4.076 26 C -0.144 4.144 27 C 0.080 3.920 28 F -0.104 7.104 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.272 0.728 33 H 0.145 0.855 34 H 0.258 0.742 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.031 0.969 38 H 0.039 0.961 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.039 0.961 42 H 0.191 0.809 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -21.046 -22.902 -6.257 31.727 hybrid contribution 0.293 0.772 -0.085 0.830 sum -20.753 -22.130 -6.342 30.994 Atomic orbital electron populations 1.21936 0.86100 1.06965 1.06863 1.22100 0.93001 0.82182 0.73515 1.90816 1.71718 1.33222 1.49539 1.43523 1.03484 1.11208 1.72800 1.17619 0.84819 0.97067 1.00529 1.21119 0.92814 0.97730 0.96570 1.19772 0.93238 0.97335 1.03644 1.18610 0.82577 0.85043 0.79489 1.90801 1.71696 1.39328 1.44449 1.45584 1.05229 1.28101 1.55356 1.21849 0.91745 0.87374 0.95224 0.90772 1.23012 0.92118 0.97801 1.03486 1.20969 0.92990 0.86275 0.93985 1.44673 1.21591 1.09511 1.59503 1.19407 1.03872 0.87564 1.26831 0.90689 1.25639 0.97414 1.02431 1.00056 1.70151 1.14405 1.36056 1.38998 0.85067 0.76923 0.79295 0.77962 1.21427 1.21409 1.19595 1.21942 0.88253 0.93805 0.96004 1.21501 1.02058 0.90830 0.93238 1.21326 0.90365 1.01207 1.01525 1.17738 0.90523 0.87588 0.96185 1.91521 1.77953 1.59340 1.81628 0.86531 0.88547 0.86401 0.72774 0.85524 0.74208 0.89042 0.88392 0.96883 0.96123 0.94142 0.94653 0.96143 0.80906 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.31 71.23 0.73 -0.40 16 2 C 0.50 9.25 7.78 87.65 0.68 9.93 16 3 O -0.57 -17.82 14.51 -3.07 -0.04 -17.86 16 4 N -0.66 -9.76 5.22 -303.43 -1.59 -11.35 16 5 C 0.10 1.89 6.31 38.11 0.24 2.13 16 6 C -0.06 -1.64 8.24 22.65 0.19 -1.46 16 7 C -0.14 -3.33 5.87 -20.10 -0.12 -3.45 16 8 C 0.55 17.80 7.77 86.75 0.67 18.47 16 9 O -0.58 -25.09 15.98 -3.94 -0.06 -25.15 16 10 N -0.69 -19.01 5.15 -438.93 -2.26 -21.27 16 11 C 0.14 5.27 3.42 46.38 0.16 5.43 16 12 H 0.07 3.12 7.54 -2.39 -0.02 3.11 16 13 C -0.13 -4.26 6.60 31.78 0.21 -4.05 16 14 C 0.18 8.97 5.37 86.73 0.47 9.44 16 15 N -0.63 -33.66 3.39 -692.02 -2.35 -36.01 16 16 C -0.25 -14.62 10.28 84.03 0.86 -13.75 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 18 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 19 N -0.95 -57.54 10.31 21.65 0.22 -57.32 16 20 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 24 C 0.13 5.66 6.93 86.85 0.60 6.26 16 25 C -0.06 -0.82 9.53 22.53 0.21 -0.61 16 26 C -0.13 -1.42 10.00 22.25 0.22 -1.20 16 27 C 0.10 1.52 7.31 22.57 0.17 1.68 16 28 F -0.13 -1.63 16.95 44.97 0.76 -0.87 16 29 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.12 0.03 8.14 -2.38 -0.02 0.01 16 32 H 0.43 2.84 8.66 -92.71 -0.80 2.04 16 33 H 0.13 4.39 5.78 -2.91 -0.02 4.37 16 34 H 0.42 7.64 6.59 -92.70 -0.61 7.03 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.10 2.66 8.00 -2.39 -0.02 2.64 16 37 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 38 H 0.02 1.10 7.51 -2.38 -0.02 1.09 16 39 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.17 1.31 6.39 -2.91 -0.02 1.29 16 43 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -87.68 364.51 2.14 -85.53 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -0.33 Total: 9.81 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 5.77 Total: 25.26 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -5.97 Total: -125.95 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.11 Total: -43.01 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.76 Total: -0.87 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -87.68 2.14 -85.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016381097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.425 kcal (2) G-P(sol) polarization free energy of solvation -87.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds