Wall clock time and date at job start Tue Mar 31 2020 18:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 119.99785 * 2 1 4 4 N 1.34773 * 120.00194 * 180.02562 * 2 1 3 5 5 C 1.39552 * 120.00032 * 185.63965 * 4 2 1 6 6 C 1.39058 * 119.93364 * 24.84892 * 5 4 2 7 7 C 1.37702 * 120.10341 * 179.73849 * 6 5 4 8 8 C 1.39743 * 119.96517 * 0.55785 * 7 6 5 9 9 C 1.47601 * 120.06767 * 179.71446 * 8 7 6 10 10 O 1.21583 * 119.99978 * 179.72040 * 9 8 7 11 11 N 1.34780 * 119.99598 * 359.72896 * 9 8 7 12 12 C 1.46508 * 119.99511 * 179.97438 * 11 9 8 13 13 H 1.08993 * 110.77700 * 323.21145 * 12 11 9 14 14 C 1.55159 * 110.71378 * 199.97513 * 12 11 9 15 15 C 1.55138 * 101.47954 * 205.96758 * 14 12 11 16 16 N 1.47424 * 104.72198 * 37.29805 * 15 14 12 17 17 C 1.36940 * 125.65097 * 155.81861 * 16 15 14 18 18 H 1.07998 * 120.00185 * 185.01805 * 17 16 15 19 19 C 1.38815 * 119.99401 * 5.01580 * 17 16 15 20 20 N 1.31614 * 120.00296 * 34.69844 * 19 17 16 21 21 Si 1.86796 * 119.99555 * 214.97668 * 19 17 16 22 22 H 1.48500 * 109.47256 * 179.72553 * 21 19 17 23 23 H 1.48500 * 109.47318 * 299.72637 * 21 19 17 24 24 H 1.48498 * 109.47501 * 59.72625 * 21 19 17 25 25 C 1.47029 * 108.70320 * 335.54822 * 16 15 14 26 26 C 1.39749 * 119.86387 * 359.44418 * 8 7 6 27 27 C 1.37868 * 119.89930 * 0.27443 * 26 8 7 28 28 F 1.35101 * 119.98394 * 179.97438 * 27 26 8 29 29 H 1.09003 * 109.46782 * 239.99508 * 1 2 3 30 30 H 1.09000 * 109.47342 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47472 * 119.99671 * 1 2 3 32 32 H 0.97008 * 119.99641 * 5.64271 * 4 2 1 33 33 H 1.07998 * 119.95109 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.02219 * 180.27285 * 7 6 5 35 35 H 0.97000 * 120.00111 * 359.97438 * 11 9 8 36 36 H 1.08995 * 111.00684 * 324.20424 * 14 12 11 37 37 H 1.08993 * 111.00342 * 88.02600 * 14 12 11 38 38 H 1.08993 * 110.49320 * 278.45557 * 15 14 12 39 39 H 1.09000 * 110.34107 * 156.06081 * 15 14 12 40 40 H 0.97003 * 119.99968 * 355.48794 * 20 19 17 41 41 H 1.09000 * 109.87391 * 120.70742 * 25 16 15 42 42 H 1.08997 * 109.88160 * 241.87259 * 25 16 15 43 43 H 1.08003 * 120.04394 * 180.25764 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5714 -1.1701 0.1182 6 6 4.2173 -0.1045 0.7355 7 6 5.5888 -0.1063 0.8593 8 6 6.3338 -1.1750 0.3538 9 6 7.8045 -1.1762 0.4797 10 8 8.4511 -2.1091 0.0439 11 7 8.4304 -0.1434 1.0780 12 6 9.8901 -0.1449 1.2035 13 1 10.2604 -1.1515 1.3970 14 6 10.3460 0.8319 2.3195 15 6 11.7797 1.1914 1.8484 16 7 11.6832 1.2677 0.3793 17 6 12.5170 1.9819 -0.4394 18 1 12.3146 2.0393 -1.4986 19 6 13.6222 2.6319 0.0925 20 7 14.2775 2.0979 1.1013 21 14 14.1746 4.2685 -0.6185 22 1 15.3651 4.7544 0.1244 23 1 14.5229 4.0935 -2.0514 24 1 13.0752 5.2589 -0.4938 25 6 10.5475 0.4448 -0.0620 26 6 5.6833 -2.2451 -0.2663 27 6 4.3095 -2.2403 -0.3821 28 9 3.6788 -3.2738 -0.9817 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6994 -2.0052 -0.0835 33 1 3.6422 0.7237 1.1224 34 1 6.0887 0.7199 1.3429 35 1 7.9145 0.6010 1.4254 36 1 9.7082 1.7152 2.3501 37 1 10.3679 0.3345 3.2890 38 1 12.4843 0.4136 2.1424 39 1 12.0832 2.1544 2.2591 40 1 13.9505 1.2840 1.5156 41 1 9.8285 1.0632 -0.5995 42 1 10.9012 -0.3606 -0.7056 43 1 6.2559 -3.0746 -0.6543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016420624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:12 Heat of formation + Delta-G solvation = -80.640197 kcal Electronic energy + Delta-G solvation = -27888.686000 eV Core-core repulsion = 23655.275139 eV Total energy + Delta-G solvation = -4233.410860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.09836 -41.82861 -41.15268 -39.53984 -38.73505 -36.09382 -35.91107 -33.95452 -32.21247 -31.76852 -31.00298 -29.97970 -28.70519 -26.45466 -25.14096 -24.16019 -22.54610 -22.23709 -21.68186 -21.38728 -19.80701 -19.54724 -18.98977 -18.24251 -17.68555 -17.27951 -17.11174 -16.80504 -16.39828 -16.33469 -16.12522 -15.75529 -15.62440 -15.41394 -15.11605 -14.80813 -14.60074 -14.47512 -14.11500 -13.80586 -13.75740 -13.60913 -13.34215 -13.05763 -12.79569 -12.73313 -12.68896 -12.47586 -12.43001 -11.89155 -11.83058 -11.79783 -11.69692 -11.31527 -10.94843 -10.45979 -10.25378 -10.09248 -9.33902 -9.07767 -8.48872 -5.27670 -0.55891 -0.01166 1.26523 1.56739 1.65035 1.71293 1.82314 1.85123 1.91868 2.56561 2.60861 2.92230 3.13295 3.37653 3.48798 3.56736 3.64140 3.71680 3.86770 3.87320 3.99807 4.09317 4.27517 4.35850 4.48112 4.49096 4.61458 4.64920 4.78561 4.83572 4.86843 4.88937 4.91038 5.00512 5.03602 5.07293 5.15541 5.20883 5.39485 5.62042 5.64563 6.19508 6.28505 6.41302 6.83467 6.91487 7.07269 7.69282 8.24425 8.93706 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002220 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.610765 B =12611.947178 C =13326.296418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.509 3.491 3 O -0.560 6.560 4 N -0.660 5.660 5 C 0.149 3.851 6 C -0.120 4.120 7 C -0.056 4.056 8 C -0.136 4.136 9 C 0.559 3.441 10 O -0.577 6.577 11 N -0.695 5.695 12 C 0.150 3.850 13 H 0.085 0.915 14 C -0.116 4.116 15 C 0.141 3.859 16 N -0.626 5.626 17 C -0.363 4.363 18 H 0.058 0.942 19 C -0.075 4.075 20 N -0.939 5.939 21 Si 1.121 2.879 22 H -0.288 1.288 23 H -0.278 1.278 24 H -0.278 1.278 25 C 0.129 3.871 26 C -0.078 4.078 27 C 0.055 3.945 28 F -0.132 7.132 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.432 0.568 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.417 0.583 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.007 0.993 39 H 0.036 0.964 40 H 0.258 0.742 41 H 0.031 0.969 42 H -0.001 1.001 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.745 -6.691 3.385 34.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.300 3.700 3 O -0.438 6.438 4 N -0.306 5.306 5 C 0.051 3.949 6 C -0.140 4.140 7 C -0.075 4.075 8 C -0.140 4.140 9 C 0.348 3.652 10 O -0.458 6.458 11 N -0.347 5.347 12 C 0.045 3.955 13 H 0.103 0.897 14 C -0.155 4.155 15 C 0.016 3.984 16 N -0.354 5.354 17 C -0.491 4.491 18 H 0.076 0.924 19 C -0.271 4.271 20 N -0.582 5.582 21 Si 0.945 3.055 22 H -0.214 1.214 23 H -0.204 1.204 24 H -0.204 1.204 25 C 0.002 3.998 26 C -0.098 4.098 27 C 0.033 3.967 28 F -0.111 7.111 29 H 0.138 0.862 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.271 0.729 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.256 0.744 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.025 0.975 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.017 0.983 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -31.796 -5.397 3.084 32.398 hybrid contribution -0.909 -1.934 -0.541 2.204 sum -32.705 -7.331 2.543 33.613 Atomic orbital electron populations 1.21997 0.86157 1.07022 1.07115 1.22002 0.92845 0.81848 0.73267 1.90719 1.71507 1.32716 1.48857 1.43587 1.03697 1.11825 1.71481 1.18062 0.84864 0.94892 0.97058 1.21340 0.94488 0.98922 0.99275 1.21518 0.93523 0.96681 0.95796 1.19535 0.91716 0.97378 1.05390 1.18464 0.87831 0.81871 0.77035 1.90788 1.68251 1.37002 1.49746 1.45685 1.06664 1.22943 1.59437 1.21668 0.79467 0.99685 0.94729 0.89717 1.23038 0.95546 0.99141 0.97753 1.21594 0.95078 0.97900 0.83877 1.44861 1.32386 1.55662 1.02443 1.19940 1.09362 1.27782 0.92026 0.92361 1.27159 0.93658 1.06012 1.00287 1.70979 1.34919 1.22568 1.29717 0.82756 0.75620 0.72030 0.75092 1.21417 1.20410 1.20424 1.21675 0.89814 0.92343 0.95925 1.21049 0.92226 0.99111 0.97413 1.17026 0.89878 0.87625 1.02148 1.91500 1.81933 1.56224 1.81423 0.86162 0.88422 0.86599 0.72873 0.81877 0.82002 0.74394 0.88685 0.87485 0.97514 0.94575 0.93074 0.95089 0.98285 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.24 10.32 71.24 0.74 0.49 16 2 C 0.51 5.78 7.74 87.66 0.68 6.46 16 3 O -0.56 -11.47 14.23 -3.03 -0.04 -11.51 16 4 N -0.66 -6.86 5.29 -303.33 -1.60 -8.46 16 5 C 0.15 2.49 6.44 38.37 0.25 2.73 16 6 C -0.12 -2.10 8.69 22.34 0.19 -1.90 16 7 C -0.06 -0.98 9.53 22.51 0.21 -0.77 16 8 C -0.14 -3.14 5.88 -20.08 -0.12 -3.26 16 9 C 0.56 16.64 7.76 86.71 0.67 17.32 16 10 O -0.58 -22.26 16.07 -3.98 -0.06 -22.32 16 11 N -0.70 -18.71 5.08 -440.00 -2.24 -20.94 16 12 C 0.15 5.22 3.23 46.18 0.15 5.37 16 13 H 0.08 3.17 7.70 -2.39 -0.02 3.15 16 14 C -0.12 -3.72 6.71 32.07 0.22 -3.50 16 15 C 0.14 6.56 5.16 86.94 0.45 7.01 16 16 N -0.63 -33.29 3.37 -691.54 -2.33 -35.63 16 17 C -0.36 -21.64 10.01 84.03 0.84 -20.79 16 18 H 0.06 3.51 8.03 -2.91 -0.02 3.49 16 19 C -0.07 -4.41 4.97 84.86 0.42 -3.99 16 20 N -0.94 -58.60 12.94 21.65 0.28 -58.32 16 21 Si 1.12 52.33 30.03 68.60 2.06 54.39 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.13 5.86 6.99 86.73 0.61 6.46 16 26 C -0.08 -1.76 9.56 22.55 0.22 -1.54 16 27 C 0.06 1.04 7.29 22.44 0.16 1.20 16 28 F -0.13 -2.34 16.79 44.97 0.76 -1.58 16 29 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.10 0.28 8.12 -2.39 -0.02 0.26 16 31 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.43 1.80 8.44 -92.70 -0.78 1.01 16 33 H 0.16 2.88 5.77 -2.91 -0.02 2.86 16 34 H 0.16 1.98 6.39 -2.91 -0.02 1.96 16 35 H 0.42 8.09 6.54 -92.71 -0.61 7.48 16 36 H 0.09 2.63 8.00 -2.39 -0.02 2.61 16 37 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.01 0.35 7.08 -2.39 -0.02 0.34 16 39 H 0.04 1.83 7.45 -2.39 -0.02 1.81 16 40 H 0.26 16.21 5.72 -92.71 -0.53 15.68 16 41 H 0.03 1.39 8.03 -2.39 -0.02 1.37 16 42 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.14 3.49 7.64 -2.91 -0.02 3.46 16 Total: -1.00 -83.79 362.87 2.43 -81.35 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.07 Total: 11.74 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 5.68 Total: 11.29 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -5.89 Total: -123.35 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.11 Total: -33.84 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.76 Total: -1.58 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.06 Total: 54.39 kcal Total: -83.79 2.43 -81.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016420624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.714 kcal (2) G-P(sol) polarization free energy of solvation -83.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds