Wall clock time and date at job start Tue Mar 31 2020 18:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21284 * 120.00266 * 2 1 4 4 N 1.34774 * 120.00173 * 179.97438 * 2 1 3 5 5 C 1.39558 * 120.00024 * 185.53011 * 4 2 1 6 6 C 1.39064 * 119.93422 * 24.86676 * 5 4 2 7 7 C 1.37695 * 120.10493 * 179.97438 * 6 5 4 8 8 C 1.39742 * 119.96568 * 0.02562 * 7 6 5 9 9 C 1.47597 * 120.06511 * 179.97438 * 8 7 6 10 10 O 1.21584 * 119.99992 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99939 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00334 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.88570 * 31.11778 * 12 11 9 14 14 C 1.55152 * 111.00488 * 154.99933 * 12 11 9 15 15 C 1.54329 * 102.94062 * 153.57927 * 14 12 11 16 16 N 1.47017 * 107.26843 * 337.80542 * 15 14 12 17 17 C 1.36947 * 125.64559 * 178.98927 * 16 15 14 18 18 H 1.07998 * 119.99596 * 184.99586 * 17 16 15 19 19 C 1.38807 * 119.99780 * 4.99683 * 17 16 15 20 20 N 1.31623 * 120.00371 * 354.96156 * 19 17 16 21 21 Si 1.86802 * 119.99578 * 174.96633 * 19 17 16 22 22 H 1.48501 * 109.47030 * 95.00073 * 21 19 17 23 23 H 1.48502 * 109.46771 * 214.99527 * 21 19 17 24 24 H 1.48495 * 109.47295 * 334.99860 * 21 19 17 25 25 C 1.47427 * 108.70722 * 358.94250 * 16 15 14 26 26 C 1.39747 * 119.86612 * 359.97438 * 8 7 6 27 27 C 1.37871 * 119.89863 * 359.97438 * 26 8 7 28 28 F 1.35103 * 119.98421 * 180.02562 * 27 26 8 29 29 H 1.09002 * 109.47433 * 239.99692 * 1 2 3 30 30 H 1.08997 * 109.47215 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46476 * 120.00253 * 1 2 3 32 32 H 0.97003 * 120.00326 * 5.53162 * 4 2 1 33 33 H 1.08003 * 119.94810 * 0.25807 * 6 5 4 34 34 H 1.07995 * 120.02141 * 180.02562 * 7 6 5 35 35 H 0.97001 * 119.99567 * 359.97438 * 11 9 8 36 36 H 1.09008 * 110.72182 * 271.93861 * 14 12 11 37 37 H 1.08997 * 110.72306 * 35.21667 * 14 12 11 38 38 H 1.08995 * 109.88126 * 97.22589 * 15 14 12 39 39 H 1.08997 * 109.88077 * 218.38972 * 15 14 12 40 40 H 0.96999 * 119.99817 * 179.97438 * 20 19 17 41 41 H 1.09003 * 110.36484 * 265.29247 * 25 16 15 42 42 H 1.09002 * 110.36818 * 142.96643 * 25 16 15 43 43 H 1.08001 * 120.05215 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5716 -1.1699 0.1170 6 6 4.2186 -0.1033 0.7315 7 6 5.5905 -0.1026 0.8488 8 6 6.3343 -1.1749 0.3492 9 6 7.8050 -1.1762 0.4732 10 8 8.3706 -0.2438 1.0109 11 7 8.5211 -2.2114 -0.0087 12 6 9.9808 -2.2130 0.1149 13 1 10.2952 -1.6844 1.0148 14 6 10.5389 -3.6605 0.0964 15 6 11.9714 -3.4718 -0.4460 16 7 11.9947 -2.2003 -1.1837 17 6 13.0883 -1.6572 -1.8037 18 1 13.0234 -0.6770 -2.2524 19 6 14.2803 -2.3667 -1.8555 20 7 14.3898 -3.5165 -1.2243 21 14 15.7291 -1.6894 -2.8208 22 1 16.6264 -0.9395 -1.9056 23 1 16.4792 -2.8116 -3.4400 24 1 15.2333 -0.7790 -3.8840 25 6 10.6455 -1.6072 -1.1465 26 6 5.6828 -2.2461 -0.2681 27 6 4.3087 -2.2415 -0.3816 28 9 3.6771 -3.2764 -0.9776 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 1.6993 -2.0053 -0.0801 33 1 3.6437 0.7237 1.1215 34 1 6.0915 0.7262 1.3267 35 1 8.0697 -2.9557 -0.4367 36 1 10.5597 -4.0787 1.1029 37 1 9.9533 -4.2912 -0.5724 38 1 12.6792 -3.4331 0.3819 39 1 12.2255 -4.2935 -1.1155 40 1 15.2226 -4.0124 -1.2609 41 1 10.0852 -1.8828 -2.0399 42 1 10.7100 -0.5227 -1.0576 43 1 6.2547 -3.0762 -0.6557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016420625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:16 Heat of formation + Delta-G solvation = -54.395497 kcal Electronic energy + Delta-G solvation = -27803.516842 eV Core-core repulsion = 23571.244037 eV Total energy + Delta-G solvation = -4232.272805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.32592 -41.06088 -39.98637 -38.30752 -37.13036 -35.34309 -34.13768 -32.15859 -31.37559 -30.86832 -29.46992 -28.95245 -27.05634 -24.78773 -24.16543 -23.12141 -21.40290 -20.77206 -20.38718 -19.94045 -18.89161 -17.90346 -17.58074 -16.87322 -16.81686 -16.37342 -15.96581 -15.73922 -15.70113 -14.80828 -14.75314 -14.62320 -14.41228 -14.11748 -13.92841 -13.64767 -13.29842 -13.14939 -12.84448 -12.66998 -12.57084 -12.42171 -12.19247 -12.02706 -11.80829 -11.11125 -10.98846 -10.88819 -10.75792 -10.45865 -10.35665 -10.09467 -9.91730 -9.80784 -9.67638 -9.27186 -8.83569 -8.58387 -8.51286 -6.82745 -5.71196 -3.04152 0.33439 0.80767 1.91483 2.36886 2.72833 3.21008 3.42368 3.47748 3.50017 3.56135 3.69355 4.04197 4.29303 4.50224 4.55725 4.61368 4.72707 4.75639 4.89874 5.01426 5.24624 5.27542 5.40998 5.44506 5.56619 5.61494 5.68520 5.72981 5.79324 5.88656 6.02107 6.17635 6.30543 6.40906 6.44989 6.57127 6.68908 6.69841 6.95655 7.44268 7.54281 7.57143 7.64634 7.82236 8.24696 8.31330 9.22635 9.82576 10.47592 11.40990 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.002052 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.908739 B =13641.778761 C =13958.819741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.516 6.516 4 N -0.669 5.669 5 C 0.139 3.861 6 C -0.116 4.116 7 C -0.045 4.045 8 C -0.119 4.119 9 C 0.557 3.443 10 O -0.531 6.531 11 N -0.710 5.710 12 C 0.126 3.874 13 H 0.099 0.901 14 C -0.150 4.150 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.226 4.226 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.129 3.871 26 C -0.098 4.098 27 C 0.058 3.942 28 F -0.136 7.136 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.416 0.584 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.396 0.604 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.252 0.748 41 H 0.021 0.979 42 H 0.044 0.956 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.541 -0.207 4.442 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.391 6.391 4 N -0.314 5.314 5 C 0.042 3.958 6 C -0.136 4.136 7 C -0.064 4.064 8 C -0.123 4.123 9 C 0.343 3.657 10 O -0.408 6.408 11 N -0.360 5.360 12 C 0.021 3.979 13 H 0.117 0.883 14 C -0.189 4.189 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.001 3.999 26 C -0.118 4.118 27 C 0.037 3.963 28 F -0.114 7.114 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.253 0.747 33 H 0.178 0.822 34 H 0.167 0.833 35 H 0.231 0.769 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -29.567 1.139 4.766 29.970 hybrid contribution 0.196 -0.902 -0.989 1.353 sum -29.370 0.237 3.777 29.613 Atomic orbital electron populations 1.21944 0.90018 1.06387 1.04863 1.21114 0.91153 0.82761 0.74943 1.90740 1.70320 1.31214 1.46788 1.43477 1.04830 1.10764 1.72324 1.17940 0.83383 0.95751 0.98736 1.21302 0.94531 0.98701 0.99036 1.21309 0.92682 0.97198 0.95248 1.19912 0.93880 0.95763 1.02747 1.18016 0.86108 0.82756 0.78803 1.90811 1.71743 1.34789 1.43485 1.45945 1.08135 1.22117 1.59826 1.22374 0.76749 0.98122 1.00617 0.88265 1.23194 1.00318 0.94401 1.00951 1.21159 0.88972 0.89038 0.95477 1.44392 1.04338 1.21691 1.62632 1.19081 0.88194 0.99992 1.28207 0.90354 1.24818 0.98007 0.97017 1.00628 1.69956 1.25796 1.15232 1.46036 0.86086 0.82385 0.77616 0.79616 1.21639 1.21664 1.20621 1.21826 0.87371 0.96881 0.93781 1.21136 0.92049 0.99378 0.99233 1.17112 0.90366 0.87067 1.01785 1.91496 1.82174 1.56160 1.81609 0.88719 0.88184 0.88832 0.74708 0.82243 0.83336 0.76875 0.91506 0.92016 0.93532 0.93217 0.93752 0.96184 0.93816 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.42 10.32 36.00 0.37 -0.05 16 2 C 0.51 3.55 7.74 -10.99 -0.09 3.47 16 3 O -0.52 -5.76 14.23 5.55 0.08 -5.69 16 4 N -0.67 -4.31 5.29 -9.81 -0.05 -4.36 16 5 C 0.14 1.29 6.44 -83.64 -0.54 0.75 16 6 C -0.12 -1.20 8.68 -39.47 -0.34 -1.54 16 7 C -0.04 -0.51 9.58 -39.22 -0.38 -0.89 16 8 C -0.12 -1.42 5.88 -104.95 -0.62 -2.04 16 9 C 0.56 8.43 7.76 -12.44 -0.10 8.33 16 10 O -0.53 -10.05 15.98 5.29 0.08 -9.97 16 11 N -0.71 -10.16 5.15 -52.75 -0.27 -10.43 16 12 C 0.13 2.28 3.42 -65.79 -0.23 2.06 16 13 H 0.10 1.98 7.54 -51.93 -0.39 1.58 16 14 C -0.15 -2.66 6.60 -24.90 -0.16 -2.82 16 15 C 0.18 4.28 5.37 -3.06 -0.02 4.26 16 16 N -0.60 -15.68 3.39 -170.07 -0.58 -16.25 16 17 C -0.23 -6.45 10.27 -15.06 -0.15 -6.60 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 20 N -0.92 -27.15 10.34 55.49 0.57 -26.58 16 21 Si 0.91 22.41 29.56 -169.99 -5.02 17.39 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.13 2.79 6.93 -2.53 -0.02 2.77 16 26 C -0.10 -0.96 9.51 -39.15 -0.37 -1.34 16 27 C 0.06 0.55 7.29 -39.32 -0.29 0.26 16 28 F -0.14 -1.20 16.79 2.25 0.04 -1.16 16 29 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.10 0.28 8.12 -51.93 -0.42 -0.15 16 31 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.42 1.46 8.44 -40.82 -0.34 1.11 16 33 H 0.16 1.68 5.78 -52.48 -0.30 1.37 16 34 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 35 H 0.40 4.44 6.59 -40.82 -0.27 4.17 16 36 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 38 H 0.05 1.23 7.53 -51.93 -0.39 0.84 16 39 H 0.05 1.30 7.37 -51.93 -0.38 0.92 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.15 1.14 6.39 -52.49 -0.34 0.81 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -35.44 363.58 -8.00 -43.45 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.32 Total: 1.85 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -3.02 Total: 6.28 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.33 Total: -57.63 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.16 Total: -15.65 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.44 -8.00 -43.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016420625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.950 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds