Wall clock time and date at job start Tue Mar 31 2020 18:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21284 * 120.00266 * 2 1 4 4 N 1.34774 * 120.00173 * 179.97438 * 2 1 3 5 5 C 1.39558 * 120.00024 * 185.53011 * 4 2 1 6 6 C 1.39064 * 119.93422 * 24.86676 * 5 4 2 7 7 C 1.37695 * 120.10493 * 179.97438 * 6 5 4 8 8 C 1.39742 * 119.96568 * 0.02562 * 7 6 5 9 9 C 1.47597 * 120.06511 * 179.97438 * 8 7 6 10 10 O 1.21584 * 119.99992 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99939 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00334 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.88570 * 31.11778 * 12 11 9 14 14 C 1.55152 * 111.00488 * 154.99933 * 12 11 9 15 15 C 1.54329 * 102.94062 * 153.57927 * 14 12 11 16 16 N 1.47017 * 107.26843 * 337.80542 * 15 14 12 17 17 C 1.36947 * 125.64559 * 178.98927 * 16 15 14 18 18 H 1.07998 * 119.99596 * 184.99586 * 17 16 15 19 19 C 1.38807 * 119.99780 * 4.99683 * 17 16 15 20 20 N 1.31623 * 120.00371 * 354.96156 * 19 17 16 21 21 Si 1.86802 * 119.99578 * 174.96633 * 19 17 16 22 22 H 1.48501 * 109.47030 * 95.00073 * 21 19 17 23 23 H 1.48502 * 109.46771 * 214.99527 * 21 19 17 24 24 H 1.48495 * 109.47295 * 334.99860 * 21 19 17 25 25 C 1.47427 * 108.70722 * 358.94250 * 16 15 14 26 26 C 1.39747 * 119.86612 * 359.97438 * 8 7 6 27 27 C 1.37871 * 119.89863 * 359.97438 * 26 8 7 28 28 F 1.35103 * 119.98421 * 180.02562 * 27 26 8 29 29 H 1.09002 * 109.47433 * 239.99692 * 1 2 3 30 30 H 1.08997 * 109.47215 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46476 * 120.00253 * 1 2 3 32 32 H 0.97003 * 120.00326 * 5.53162 * 4 2 1 33 33 H 1.08003 * 119.94810 * 0.25807 * 6 5 4 34 34 H 1.07995 * 120.02141 * 180.02562 * 7 6 5 35 35 H 0.97001 * 119.99567 * 359.97438 * 11 9 8 36 36 H 1.09008 * 110.72182 * 271.93861 * 14 12 11 37 37 H 1.08997 * 110.72306 * 35.21667 * 14 12 11 38 38 H 1.08995 * 109.88126 * 97.22589 * 15 14 12 39 39 H 1.08997 * 109.88077 * 218.38972 * 15 14 12 40 40 H 0.96999 * 119.99817 * 179.97438 * 20 19 17 41 41 H 1.09003 * 110.36484 * 265.29247 * 25 16 15 42 42 H 1.09002 * 110.36818 * 142.96643 * 25 16 15 43 43 H 1.08001 * 120.05215 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5716 -1.1699 0.1170 6 6 4.2186 -0.1033 0.7315 7 6 5.5905 -0.1026 0.8488 8 6 6.3343 -1.1749 0.3492 9 6 7.8050 -1.1762 0.4732 10 8 8.3706 -0.2438 1.0109 11 7 8.5211 -2.2114 -0.0087 12 6 9.9808 -2.2130 0.1149 13 1 10.2952 -1.6844 1.0148 14 6 10.5389 -3.6605 0.0964 15 6 11.9714 -3.4718 -0.4460 16 7 11.9947 -2.2003 -1.1837 17 6 13.0883 -1.6572 -1.8037 18 1 13.0234 -0.6770 -2.2524 19 6 14.2803 -2.3667 -1.8555 20 7 14.3898 -3.5165 -1.2243 21 14 15.7291 -1.6894 -2.8208 22 1 16.6264 -0.9395 -1.9056 23 1 16.4792 -2.8116 -3.4400 24 1 15.2333 -0.7790 -3.8840 25 6 10.6455 -1.6072 -1.1465 26 6 5.6828 -2.2461 -0.2681 27 6 4.3087 -2.2415 -0.3816 28 9 3.6771 -3.2764 -0.9776 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 1.6993 -2.0053 -0.0801 33 1 3.6437 0.7237 1.1215 34 1 6.0915 0.7262 1.3267 35 1 8.0697 -2.9557 -0.4367 36 1 10.5597 -4.0787 1.1029 37 1 9.9533 -4.2912 -0.5724 38 1 12.6792 -3.4331 0.3819 39 1 12.2255 -4.2935 -1.1155 40 1 15.2226 -4.0124 -1.2609 41 1 10.0852 -1.8828 -2.0399 42 1 10.7100 -0.5227 -1.0576 43 1 6.2547 -3.0762 -0.6557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016420625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:15 Heat of formation + Delta-G solvation = -79.499341 kcal Electronic energy + Delta-G solvation = -27804.605426 eV Core-core repulsion = 23571.244037 eV Total energy + Delta-G solvation = -4233.361389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.04218 -41.79061 -41.08130 -39.40092 -38.61044 -36.07402 -35.70830 -33.88366 -32.23016 -31.64194 -31.00280 -29.90843 -28.66268 -26.53792 -25.19185 -24.05531 -22.39085 -21.96871 -21.89916 -21.35728 -19.73551 -19.06347 -18.59131 -18.21641 -17.77727 -17.15779 -17.10519 -16.68561 -16.59733 -16.33346 -16.09652 -15.77124 -15.58091 -15.44373 -14.88315 -14.66810 -14.29839 -14.14690 -13.96762 -13.77446 -13.68539 -13.63541 -13.29575 -13.04083 -12.98155 -12.82814 -12.76692 -12.43729 -12.13694 -12.03926 -11.82728 -11.81000 -11.57370 -11.25157 -10.92448 -10.71496 -10.19902 -10.05747 -9.30707 -8.91836 -7.87809 -5.23311 -0.52114 0.01713 1.29055 1.45504 1.47016 1.56582 1.75085 1.86008 1.99569 2.49451 2.60718 2.90799 3.30541 3.43040 3.56753 3.66526 3.71551 3.87232 3.93912 4.04246 4.07519 4.20063 4.31306 4.49550 4.57325 4.60151 4.65340 4.71477 4.82998 4.86872 4.90363 4.96744 5.04758 5.04895 5.14758 5.22712 5.42761 5.47625 5.64761 5.67189 5.73117 6.18129 6.21547 6.48508 6.93778 7.08474 7.14160 7.73865 8.37353 9.22505 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.002052 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.908739 B =13641.778761 C =13958.819741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.507 3.493 3 O -0.563 6.563 4 N -0.659 5.659 5 C 0.147 3.853 6 C -0.122 4.122 7 C -0.049 4.049 8 C -0.134 4.134 9 C 0.559 3.441 10 O -0.576 6.576 11 N -0.695 5.695 12 C 0.145 3.855 13 H 0.079 0.921 14 C -0.128 4.128 15 C 0.183 3.817 16 N -0.626 5.626 17 C -0.247 4.247 18 H 0.076 0.924 19 C -0.062 4.062 20 N -0.947 5.947 21 Si 0.979 3.021 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.271 1.271 25 C 0.127 3.873 26 C -0.085 4.085 27 C 0.060 3.940 28 F -0.128 7.128 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.433 0.567 33 H 0.156 0.844 34 H 0.139 0.861 35 H 0.415 0.585 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.011 0.989 39 H 0.022 0.978 40 H 0.249 0.751 41 H 0.033 0.967 42 H 0.025 0.975 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.481 -1.466 3.775 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.299 3.701 3 O -0.441 6.441 4 N -0.305 5.305 5 C 0.049 3.951 6 C -0.142 4.142 7 C -0.068 4.068 8 C -0.138 4.138 9 C 0.348 3.652 10 O -0.457 6.457 11 N -0.347 5.347 12 C 0.039 3.961 13 H 0.097 0.903 14 C -0.166 4.166 15 C 0.058 3.942 16 N -0.353 5.353 17 C -0.376 4.376 18 H 0.094 0.906 19 C -0.256 4.256 20 N -0.595 5.595 21 Si 0.807 3.193 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.195 1.195 25 C 0.000 4.000 26 C -0.105 4.105 27 C 0.038 3.962 28 F -0.107 7.107 29 H 0.138 0.862 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.273 0.727 33 H 0.174 0.826 34 H 0.157 0.843 35 H 0.254 0.746 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.029 0.971 39 H 0.040 0.960 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.043 0.957 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -32.594 -0.167 4.083 32.849 hybrid contribution 0.979 -0.478 -0.790 1.345 sum -31.615 -0.646 3.294 31.793 Atomic orbital electron populations 1.21994 0.86093 1.06972 1.07175 1.22030 0.92896 0.81909 0.73282 1.90730 1.71562 1.32883 1.48931 1.43561 1.03706 1.11756 1.71482 1.18049 0.84869 0.95004 0.97189 1.21232 0.93990 0.99239 0.99778 1.21278 0.93223 0.97008 0.95335 1.19556 0.91751 0.97239 1.05267 1.18442 0.87334 0.81857 0.77572 1.90793 1.72875 1.36486 1.45500 1.45653 1.06350 1.22809 1.59864 1.21860 0.78769 0.97663 0.97815 0.90276 1.23013 0.96312 0.94579 1.02721 1.20968 0.92276 0.87453 0.93544 1.44675 1.05337 1.22626 1.62622 1.19411 0.89503 1.00230 1.28465 0.90574 1.25653 1.00614 0.97561 1.01745 1.70160 1.26137 1.16254 1.46981 0.85059 0.78915 0.77013 0.78307 1.21459 1.21528 1.19536 1.21945 0.86135 0.95879 0.96026 1.21276 0.92451 0.98951 0.97803 1.17012 0.90195 0.87204 1.01758 1.91523 1.81964 1.55744 1.81423 0.86167 0.88543 0.86434 0.72737 0.82647 0.84343 0.74577 0.89043 0.88810 0.97118 0.96017 0.94173 0.94901 0.95661 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.29 10.32 71.23 0.74 0.45 16 2 C 0.51 6.07 7.74 87.66 0.68 6.75 16 3 O -0.56 -12.29 14.23 -3.04 -0.04 -12.33 16 4 N -0.66 -6.83 5.29 -303.33 -1.60 -8.43 16 5 C 0.15 2.44 6.44 38.37 0.25 2.69 16 6 C -0.12 -2.47 8.68 22.34 0.19 -2.27 16 7 C -0.05 -1.11 9.58 22.50 0.22 -0.90 16 8 C -0.13 -3.07 5.88 -20.08 -0.12 -3.19 16 9 C 0.56 16.61 7.76 86.71 0.67 17.29 16 10 O -0.58 -22.33 15.98 -3.98 -0.06 -22.39 16 11 N -0.70 -18.66 5.15 -439.07 -2.26 -20.92 16 12 C 0.15 5.14 3.42 46.38 0.16 5.30 16 13 H 0.08 3.18 7.54 -2.39 -0.02 3.16 16 14 C -0.13 -4.32 6.60 31.78 0.21 -4.11 16 15 C 0.18 8.91 5.37 86.73 0.47 9.37 16 16 N -0.63 -33.18 3.39 -691.99 -2.35 -35.53 16 17 C -0.25 -14.39 10.27 84.03 0.86 -13.53 16 18 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.06 -3.63 5.48 84.86 0.47 -3.16 16 20 N -0.95 -57.16 10.34 21.65 0.22 -56.94 16 21 Si 0.98 46.74 29.56 68.60 2.03 48.77 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.13 5.52 6.93 86.85 0.60 6.13 16 26 C -0.09 -1.45 9.51 22.55 0.21 -1.23 16 27 C 0.06 0.96 7.29 22.44 0.16 1.13 16 28 F -0.13 -1.81 16.79 44.97 0.76 -1.05 16 29 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.10 0.31 8.12 -2.39 -0.02 0.29 16 31 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.43 1.54 8.44 -92.71 -0.78 0.76 16 33 H 0.16 3.31 5.78 -2.91 -0.02 3.30 16 34 H 0.14 3.37 7.64 -2.91 -0.02 3.35 16 35 H 0.42 7.92 6.59 -92.71 -0.61 7.31 16 36 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.09 2.61 8.00 -2.39 -0.02 2.59 16 38 H 0.01 0.58 7.53 -2.39 -0.02 0.56 16 39 H 0.02 1.16 7.37 -2.39 -0.02 1.15 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.17 1.98 6.39 -2.91 -0.02 1.96 16 Total: -1.00 -80.69 363.58 2.14 -78.55 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -0.31 Total: 9.56 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 5.77 Total: 20.71 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -5.99 Total: -121.82 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.11 Total: -34.72 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.76 Total: -1.05 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -80.69 2.14 -78.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016420625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.948 kcal (2) G-P(sol) polarization free energy of solvation -80.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds