Wall clock time and date at job start Tue Mar 31 2020 18:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21273 * 119.99799 * 2 1 4 4 N 1.34773 * 119.99982 * 179.71695 * 2 1 3 5 5 C 1.39296 * 120.00124 * 174.69810 * 4 2 1 6 6 C 1.38724 * 120.14525 * 339.11228 * 5 4 2 7 7 C 1.38315 * 120.04375 * 180.02562 * 6 5 4 8 8 F 1.35099 * 119.82815 * 179.97438 * 7 6 5 9 9 C 1.38860 * 120.35100 * 0.02562 * 7 6 5 10 10 C 1.37681 * 120.30286 * 359.95896 * 9 7 6 11 11 C 1.39755 * 119.94453 * 359.76504 * 10 9 7 12 12 C 1.47409 * 120.17230 * 180.27744 * 11 10 9 13 13 O 1.21610 * 119.99832 * 141.46886 * 12 11 10 14 14 N 1.34770 * 120.00194 * 321.46866 * 12 11 10 15 15 C 1.47425 * 125.64852 * 354.77157 * 14 12 11 16 16 C 1.54909 * 104.83581 * 204.09468 * 15 14 12 17 17 C 1.55155 * 101.57922 * 322.98939 * 16 15 14 18 18 H 1.09001 * 110.72205 * 276.96213 * 17 16 15 19 19 N 1.46502 * 110.71936 * 153.86611 * 17 16 15 20 20 C 1.36941 * 119.99923 * 155.00343 * 19 17 16 21 21 H 1.08002 * 120.00038 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99950 * 180.02562 * 20 19 17 23 23 N 1.31626 * 119.99977 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00202 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47387 * 89.99379 * 24 22 20 26 26 H 1.48500 * 109.47124 * 210.00019 * 24 22 20 27 27 H 1.48499 * 109.47022 * 329.99798 * 24 22 20 28 28 C 1.47020 * 125.64965 * 174.46561 * 14 12 11 29 29 H 1.08997 * 109.47278 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46969 * 120.00583 * 1 2 3 31 31 H 1.09003 * 109.46876 * 240.00348 * 1 2 3 32 32 H 0.97001 * 119.99915 * 354.69616 * 4 2 1 33 33 H 1.07997 * 119.98326 * 359.97438 * 6 5 4 34 34 H 1.08006 * 119.85043 * 179.97438 * 9 7 6 35 35 H 1.08003 * 120.03125 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.36737 * 322.93163 * 15 14 12 37 37 H 1.09003 * 110.36753 * 85.25135 * 15 14 12 38 38 H 1.08998 * 111.00599 * 81.06609 * 16 15 14 39 39 H 1.09003 * 111.00212 * 204.87664 * 16 15 14 40 40 H 0.96998 * 120.00016 * 334.99529 * 19 17 16 41 41 H 0.96993 * 120.00080 * 180.02562 * 23 22 20 42 42 H 1.09000 * 109.88313 * 298.38748 * 28 14 12 43 43 H 1.08997 * 109.88606 * 59.56216 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0058 5 6 3.5694 -1.1703 -0.1057 6 6 4.2276 -0.0745 -0.6445 7 6 5.6063 -0.0801 -0.7547 8 9 6.2428 0.9893 -1.2806 9 6 6.3398 -1.1795 -0.3286 10 6 5.7014 -2.2746 0.2087 11 6 4.3092 -2.2800 0.3312 12 6 3.6210 -3.4473 0.9113 13 8 2.6630 -3.2867 1.6429 14 7 4.0534 -4.6926 0.6309 15 6 5.1267 -5.0357 -0.3198 16 6 4.8297 -6.4959 -0.7433 17 6 4.3094 -7.1057 0.5851 18 1 5.1404 -7.4126 1.2202 19 7 3.4159 -8.2363 0.3215 20 6 3.2528 -9.2148 1.2656 21 1 3.7832 -9.1531 2.2044 22 6 2.4067 -10.2864 1.0156 23 7 1.7607 -10.3618 -0.1288 24 14 2.1847 -11.6214 2.3031 25 1 1.0577 -11.2613 3.2004 26 1 1.8898 -12.9126 1.6315 27 1 3.4304 -11.7516 3.1009 28 6 3.5373 -5.9334 1.2270 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3633 -0.5138 0.8900 32 1 1.6990 -2.0050 0.0876 33 1 3.6631 0.7833 -0.9790 34 1 7.4161 -1.1754 -0.4188 35 1 6.2762 -3.1272 0.5391 36 1 5.0918 -4.3749 -1.1860 37 1 6.0997 -4.9724 0.1675 38 1 4.0619 -6.5300 -1.5161 39 1 5.7380 -6.9987 -1.0754 40 1 2.9398 -8.2919 -0.5218 41 1 1.1691 -11.1104 -0.3033 42 1 3.7027 -5.9239 2.3043 43 1 2.4729 -6.0323 1.0140 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018936960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:08 Heat of formation + Delta-G solvation = -84.272551 kcal Electronic energy + Delta-G solvation = -28578.995766 eV Core-core repulsion = 24345.427395 eV Total energy + Delta-G solvation = -4233.568371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.04126 -42.16497 -40.93162 -39.29296 -38.50307 -36.16478 -35.76633 -33.49692 -32.21672 -31.90277 -31.02011 -29.76709 -28.95338 -26.16214 -24.99713 -24.35734 -23.51270 -21.80790 -21.65668 -20.79413 -19.42613 -19.27043 -18.52455 -18.40919 -17.54835 -17.17135 -17.04096 -16.73108 -16.60338 -16.44878 -16.35297 -15.57255 -15.27868 -15.19812 -14.97192 -14.77401 -14.45582 -14.24937 -14.03809 -13.81633 -13.64137 -13.48957 -13.42268 -13.14003 -13.12728 -12.89585 -12.74743 -12.44848 -12.37297 -12.11485 -11.79072 -11.73242 -11.54529 -11.17564 -10.99456 -10.93948 -10.01705 -9.70463 -9.32830 -9.07831 -7.95891 -5.25513 -0.42369 0.03425 1.37027 1.49266 1.50525 1.51802 1.58245 1.85154 1.88208 2.50723 2.56737 3.05721 3.32628 3.42071 3.50442 3.68664 3.73575 3.94142 3.97647 4.05006 4.08423 4.22158 4.36591 4.38982 4.41137 4.53279 4.55357 4.68833 4.74651 4.79716 4.91564 4.97407 5.01703 5.05088 5.05894 5.18838 5.22951 5.26643 5.40140 5.54292 5.72569 6.13986 6.26036 6.46441 6.82286 6.96908 7.33242 8.05993 8.28057 9.26960 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.002698 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.044200 B =10375.586300 C =11567.395411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.508 3.492 3 O -0.558 6.558 4 N -0.660 5.660 5 C 0.218 3.782 6 C -0.200 4.200 7 C 0.139 3.861 8 F -0.136 7.136 9 C -0.166 4.166 10 C -0.024 4.024 11 C -0.184 4.184 12 C 0.570 3.430 13 O -0.580 6.580 14 N -0.600 5.600 15 C 0.100 3.900 16 C -0.132 4.132 17 C 0.165 3.835 18 H 0.077 0.923 19 N -0.725 5.725 20 C -0.244 4.244 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.967 5.967 24 Si 0.968 3.032 25 H -0.292 1.292 26 H -0.297 1.297 27 H -0.267 1.267 28 C 0.094 3.906 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.424 0.576 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.051 0.949 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.261 19.790 -3.753 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.300 3.700 3 O -0.437 6.437 4 N -0.304 5.304 5 C 0.119 3.881 6 C -0.222 4.222 7 C 0.118 3.882 8 F -0.114 7.114 9 C -0.185 4.185 10 C -0.042 4.042 11 C -0.190 4.190 12 C 0.360 3.640 13 O -0.462 6.462 14 N -0.331 5.331 15 C -0.022 4.022 16 C -0.170 4.170 17 C 0.054 3.946 18 H 0.095 0.905 19 N -0.364 5.364 20 C -0.376 4.376 21 H 0.097 0.903 22 C -0.263 4.263 23 N -0.617 5.617 24 Si 0.798 3.202 25 H -0.219 1.219 26 H -0.223 1.223 27 H -0.191 1.191 28 C -0.032 4.032 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.263 0.737 33 H 0.172 0.828 34 H 0.194 0.806 35 H 0.190 0.810 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.090 20.578 -3.232 22.346 hybrid contribution -1.110 -1.101 0.427 1.621 sum 6.980 19.477 -2.805 20.879 Atomic orbital electron populations 1.22006 0.86791 1.07144 1.06652 1.21900 0.92846 0.81927 0.73309 1.90631 1.71325 1.32473 1.49298 1.43776 1.04888 1.11597 1.70094 1.17499 0.83769 0.93190 0.93688 1.21357 0.93901 1.01049 1.05847 1.17857 0.89864 0.84743 0.95704 1.91515 1.81843 1.54294 1.83781 1.21324 1.02588 0.91781 1.02824 1.21389 0.90974 0.98760 0.93119 1.19587 0.95322 0.94948 1.09173 1.18045 0.83037 0.82277 0.80626 1.90762 1.29481 1.86015 1.39935 1.48465 1.37583 1.04576 1.42498 1.22777 0.90711 0.95933 0.92738 1.23044 1.02671 0.94609 0.96697 1.21448 0.91665 0.85384 0.96065 0.90487 1.42537 1.52647 1.22587 1.18585 1.19652 1.20770 0.99868 0.97293 0.90251 1.25518 1.00240 1.01446 0.99142 1.69799 1.33770 1.33068 1.25048 0.85217 0.78058 0.78566 0.78388 1.21932 1.22332 1.19120 1.22862 0.98674 0.84283 0.97395 0.87517 0.86569 0.87526 0.73656 0.82786 0.80551 0.80968 0.88294 0.87511 0.91709 0.87536 0.79187 0.94010 0.93024 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.32 71.24 0.74 -1.42 16 2 C 0.51 11.36 7.77 87.66 0.68 12.04 16 3 O -0.56 -16.04 14.03 -3.01 -0.04 -16.08 16 4 N -0.66 -15.49 4.87 -302.99 -1.48 -16.97 16 5 C 0.22 5.35 6.46 38.58 0.25 5.60 16 6 C -0.20 -4.83 8.73 22.40 0.20 -4.63 16 7 C 0.14 2.79 7.30 22.44 0.16 2.96 16 8 F -0.14 -2.86 17.26 44.97 0.78 -2.08 16 9 C -0.17 -2.40 10.00 22.29 0.22 -2.18 16 10 C -0.02 -0.37 8.21 22.50 0.18 -0.19 16 11 C -0.18 -4.20 5.37 -19.98 -0.11 -4.31 16 12 C 0.57 16.19 7.04 86.66 0.61 16.79 16 13 O -0.58 -20.64 15.57 -4.06 -0.06 -20.70 16 14 N -0.60 -15.90 3.32 -815.65 -2.71 -18.61 16 15 C 0.10 1.81 5.25 86.86 0.46 2.26 16 16 C -0.13 -3.17 6.72 31.99 0.21 -2.96 16 17 C 0.16 5.55 3.60 46.19 0.17 5.71 16 18 H 0.08 2.49 8.09 -2.39 -0.02 2.47 16 19 N -0.73 -33.37 5.15 -317.30 -1.64 -35.00 16 20 C -0.24 -12.69 9.96 84.03 0.84 -11.85 16 21 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 23 N -0.97 -56.87 13.06 21.65 0.28 -56.59 16 24 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 C 0.09 3.19 6.64 86.74 0.58 3.77 16 29 H 0.11 1.22 8.12 -2.39 -0.02 1.20 16 30 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.42 9.75 6.90 -92.71 -0.64 9.11 16 33 H 0.15 4.17 5.50 -2.91 -0.02 4.15 16 34 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.17 1.75 5.96 -2.91 -0.02 1.73 16 36 H 0.10 1.42 7.34 -2.39 -0.02 1.40 16 37 H 0.11 1.25 6.97 -2.39 -0.02 1.23 16 38 H 0.06 1.75 8.01 -2.39 -0.02 1.73 16 39 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.38 18.78 7.76 -92.71 -0.72 18.07 16 41 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.04 1.62 8.03 -2.39 -0.02 1.60 16 Total: -1.00 -72.73 362.44 2.53 -70.19 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.28 Total: 31.15 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 5.65 Total: 18.18 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -5.54 Total: -127.16 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.11 Total: -36.78 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -72.73 2.53 -70.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018936960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.078 kcal (2) G-P(sol) polarization free energy of solvation -72.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds