Wall clock time and date at job start Tue Mar 31 2020 18:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21296 * 119.99854 * 2 1 4 4 N 1.34771 * 119.99955 * 180.02562 * 2 1 3 5 5 C 1.40069 * 120.00082 * 176.05837 * 4 2 1 6 6 C 1.39036 * 119.96300 * 215.81952 * 5 4 2 7 7 C 1.38113 * 120.27195 * 179.97438 * 6 5 4 8 8 C 1.38341 * 120.19162 * 359.97438 * 7 6 5 9 9 F 1.35101 * 120.03797 * 180.02562 * 8 7 6 10 10 C 1.39814 * 119.92177 * 359.97438 * 8 7 6 11 11 C 1.47710 * 120.12960 * 180.02562 * 10 8 7 12 12 O 1.21567 * 120.00341 * 45.57843 * 11 10 8 13 13 N 1.34778 * 119.99414 * 225.57795 * 11 10 8 14 14 C 1.47020 * 125.65086 * 355.22249 * 13 11 10 15 15 C 1.54324 * 107.26994 * 178.97591 * 14 13 11 16 16 C 1.55148 * 103.10532 * 337.72072 * 15 14 13 17 17 H 1.08999 * 111.00391 * 277.51741 * 16 15 14 18 18 N 1.46503 * 111.00700 * 153.66230 * 16 15 14 19 19 C 1.36939 * 120.00041 * 154.99719 * 18 16 15 20 20 H 1.08001 * 119.99877 * 0.02562 * 19 18 16 21 21 C 1.38804 * 119.99977 * 179.97438 * 19 18 16 22 22 N 1.31626 * 120.00270 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00085 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.46853 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47063 * 120.00424 * 23 21 19 26 26 H 1.48507 * 109.46802 * 240.00110 * 23 21 19 27 27 C 1.47428 * 125.64501 * 175.26897 * 13 11 10 28 28 C 1.38485 * 119.96200 * 36.09135 * 5 4 2 29 29 H 1.09007 * 109.46684 * 239.99756 * 1 2 3 30 30 H 1.09001 * 109.47205 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47564 * 119.99917 * 1 2 3 32 32 H 0.97001 * 120.00352 * 356.05408 * 4 2 1 33 33 H 1.07998 * 119.86919 * 359.97183 * 6 5 4 34 34 H 1.07998 * 119.90670 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.88101 * 59.56228 * 14 13 11 36 36 H 1.08995 * 109.88557 * 298.39946 * 14 13 11 37 37 H 1.09004 * 110.71906 * 96.17443 * 15 14 13 38 38 H 1.09007 * 110.72121 * 219.26691 * 15 14 13 39 39 H 0.96997 * 119.99831 * 335.00510 * 18 16 15 40 40 H 0.96997 * 120.00569 * 179.97438 * 22 21 19 41 41 H 1.08997 * 110.36427 * 322.92734 * 27 13 11 42 42 H 1.08999 * 110.36524 * 85.14364 * 27 13 11 43 43 H 1.08005 * 120.09710 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5790 -1.1686 -0.0839 6 6 4.2312 -2.1694 -0.7954 7 6 5.6096 -2.1766 -0.8822 8 6 6.3510 -1.1871 -0.2617 9 9 7.6992 -1.1970 -0.3491 10 6 5.7034 -0.1763 0.4550 11 6 6.4905 0.8828 1.1188 12 8 7.3998 1.4278 0.5238 13 7 6.2004 1.2450 2.3841 14 6 5.0721 0.7429 3.1819 15 6 5.1564 1.4151 4.5685 16 6 6.6490 1.8263 4.6700 17 1 7.2643 0.9869 4.9937 18 7 6.8178 2.9743 5.5643 19 6 8.0161 3.1812 6.1940 20 1 8.8368 2.4984 6.0310 21 6 8.1763 4.2692 7.0410 22 7 7.1762 5.1017 7.2393 23 14 9.8111 4.5520 7.8994 24 1 10.7653 3.4825 7.5114 25 1 10.3588 5.8727 7.4985 26 1 9.6088 4.5258 9.3704 27 6 6.9614 2.2111 3.1972 28 6 4.3105 -0.1764 0.5471 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 1.6976 -2.0063 0.0569 33 1 3.6577 -2.9443 -1.2822 34 1 6.1101 -2.9571 -1.4360 35 1 5.1467 -0.3392 3.2894 36 1 4.1309 1.0055 2.6992 37 1 4.5109 2.2924 4.6117 38 1 4.8968 0.7079 5.3564 39 1 6.0808 3.5877 5.7105 40 1 7.2880 5.8618 7.8315 41 1 8.0290 2.1158 2.9989 42 1 6.6270 3.2276 2.9901 43 1 3.8045 0.5985 1.1039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019855968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:13 Heat of formation + Delta-G solvation = -89.106911 kcal Electronic energy + Delta-G solvation = -28664.057999 eV Core-core repulsion = 24430.279994 eV Total energy + Delta-G solvation = -4233.778005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.01721 -41.82749 -41.02708 -39.31890 -38.65297 -36.05707 -35.75366 -33.63643 -32.46791 -31.70661 -31.16520 -29.22764 -29.16921 -26.40304 -25.24426 -24.06673 -23.58714 -21.93498 -21.62263 -20.91803 -19.49227 -18.94553 -18.63414 -18.21479 -17.76672 -17.51257 -17.15388 -16.80458 -16.46294 -16.36261 -16.16780 -15.57747 -15.28857 -15.05867 -14.99917 -14.84568 -14.47503 -14.27104 -14.10061 -14.02083 -13.73439 -13.62607 -13.27343 -13.19873 -12.97892 -12.94315 -12.68119 -12.56669 -12.42195 -12.10957 -11.83388 -11.65990 -11.43998 -11.27092 -11.04738 -10.96138 -10.26483 -9.83807 -9.22017 -9.13252 -8.00700 -5.31527 -0.36647 -0.00546 1.37566 1.45145 1.46986 1.56019 1.56971 1.76609 2.01330 2.49837 2.52462 3.10614 3.17921 3.32329 3.54823 3.59141 3.81953 3.88417 3.92644 4.01346 4.08831 4.16350 4.25128 4.36307 4.45407 4.54319 4.56915 4.66565 4.72427 4.74730 4.89021 4.91126 4.98081 5.02556 5.09039 5.12385 5.17288 5.27206 5.27656 5.48189 5.75094 6.20662 6.31670 6.42418 6.84884 7.14540 7.28029 7.97328 8.22773 9.22145 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.002890 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.512909 B = 9686.814700 C =11102.433724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.582 6.582 4 N -0.654 5.654 5 C 0.130 3.870 6 C -0.068 4.068 7 C -0.124 4.124 8 C 0.104 3.896 9 F -0.146 7.146 10 C -0.162 4.162 11 C 0.562 3.438 12 O -0.582 6.582 13 N -0.604 5.604 14 C 0.107 3.893 15 C -0.128 4.128 16 C 0.170 3.830 17 H 0.071 0.929 18 N -0.721 5.721 19 C -0.250 4.250 20 H 0.075 0.925 21 C -0.068 4.068 22 N -0.964 5.964 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.295 1.295 26 H -0.287 1.287 27 C 0.089 3.911 28 C -0.077 4.077 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.438 0.562 33 H 0.195 0.805 34 H 0.180 0.820 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.379 0.621 40 H 0.253 0.747 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.470 -24.173 -17.242 35.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.461 6.461 4 N -0.303 5.303 5 C 0.035 3.965 6 C -0.088 4.088 7 C -0.143 4.143 8 C 0.083 3.917 9 F -0.124 7.124 10 C -0.166 4.166 11 C 0.351 3.649 12 O -0.463 6.463 13 N -0.336 5.336 14 C -0.015 4.015 15 C -0.166 4.166 16 C 0.059 3.941 17 H 0.089 0.911 18 N -0.359 5.359 19 C -0.381 4.381 20 H 0.093 0.907 21 C -0.261 4.261 22 N -0.614 5.614 23 Si 0.801 3.199 24 H -0.193 1.193 25 H -0.223 1.223 26 H -0.214 1.214 27 C -0.037 4.037 28 C -0.098 4.098 29 H 0.139 0.861 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.280 0.720 33 H 0.212 0.788 34 H 0.198 0.802 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.211 0.789 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.431 -23.177 -17.521 34.407 hybrid contribution 1.257 1.157 0.617 1.816 sum -17.174 -22.020 -16.903 32.643 Atomic orbital electron populations 1.21960 0.86508 1.06407 1.07298 1.22018 0.92835 0.82408 0.73434 1.90808 1.71850 1.33532 1.49868 1.43487 1.03127 1.11056 1.72588 1.17717 0.84479 0.96685 0.97648 1.21398 0.93103 0.98815 0.95464 1.21299 0.94371 0.98205 1.00437 1.18108 0.76998 0.96790 0.99815 1.91508 1.30209 1.96219 1.94474 1.19693 0.94873 0.97272 1.04772 1.18369 0.83177 0.82771 0.80548 1.90766 1.33837 1.56925 1.64814 1.48445 1.30062 1.42927 1.12216 1.22363 0.88458 0.99873 0.90766 1.22886 0.95991 1.01663 0.96079 1.21513 0.96057 0.90149 0.86370 0.91130 1.42422 1.13194 1.29007 1.51278 1.19655 0.91407 1.07587 1.19482 0.90678 1.25556 1.01063 0.97752 1.01730 1.69809 1.32461 1.17026 1.42113 0.85098 0.79494 0.77380 0.77917 1.19260 1.22253 1.21413 1.23194 0.95270 0.91592 0.93631 1.21349 0.90306 0.99813 0.98349 0.86114 0.89676 0.86033 0.72033 0.78787 0.80227 0.88812 0.90144 0.90757 0.87415 0.78860 0.93785 0.93460 0.93506 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 10.32 71.24 0.74 0.23 16 2 C 0.50 6.56 7.77 87.66 0.68 7.24 16 3 O -0.58 -15.21 14.61 -3.08 -0.04 -15.25 16 4 N -0.65 -4.87 5.34 -303.56 -1.62 -6.49 16 5 C 0.13 1.87 6.27 38.07 0.24 2.11 16 6 C -0.07 -0.59 9.95 22.43 0.22 -0.37 16 7 C -0.12 -1.76 10.01 22.26 0.22 -1.54 16 8 C 0.10 2.71 7.25 22.68 0.16 2.88 16 9 F -0.15 -4.70 16.40 44.97 0.74 -3.96 16 10 C -0.16 -4.87 5.46 -20.07 -0.11 -4.98 16 11 C 0.56 22.28 7.23 86.75 0.63 22.91 16 12 O -0.58 -28.32 16.79 -3.93 -0.07 -28.39 16 13 N -0.60 -22.31 3.33 -814.38 -2.71 -25.02 16 14 C 0.11 2.96 5.58 86.73 0.48 3.44 16 15 C -0.13 -3.89 6.58 31.78 0.21 -3.68 16 16 C 0.17 6.91 3.74 46.55 0.17 7.09 16 17 H 0.07 2.85 8.09 -2.39 -0.02 2.83 16 18 N -0.72 -36.59 5.26 -315.59 -1.66 -38.24 16 19 C -0.25 -14.05 9.96 84.03 0.84 -13.21 16 20 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 22 N -0.96 -59.09 13.06 21.65 0.28 -58.80 16 23 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 C 0.09 3.82 6.61 87.02 0.58 4.40 16 28 C -0.08 -1.86 7.16 22.66 0.16 -1.70 16 29 H 0.12 -0.24 8.14 -2.38 -0.02 -0.26 16 30 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 31 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.44 -1.10 8.82 -92.71 -0.82 -1.91 16 33 H 0.20 -0.32 8.06 -2.91 -0.02 -0.34 16 34 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.04 5.88 -2.39 -0.01 2.02 16 37 H 0.07 2.35 8.00 -2.38 -0.02 2.33 16 38 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 39 H 0.38 20.34 7.76 -92.71 -0.72 19.62 16 40 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.05 2.22 8.08 -2.39 -0.02 2.20 16 42 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.14 3.84 3.96 -2.91 -0.01 3.83 16 Total: -1.00 -89.10 366.73 2.18 -86.92 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.46 Total: 18.97 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 5.69 Total: 21.33 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -5.71 Total: -128.55 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.11 Total: -43.64 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.74 Total: -3.96 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -89.10 2.18 -86.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019855968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.191 kcal (2) G-P(sol) polarization free energy of solvation -89.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds