Wall clock time and date at job start Tue Mar 31 2020 18:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 119.99987 * 2 1 4 4 N 1.34784 * 120.00220 * 179.97438 * 2 1 3 5 5 C 1.39550 * 120.00153 * 182.88060 * 4 2 1 6 6 C 1.39076 * 119.93206 * 332.43892 * 5 4 2 7 7 C 1.37695 * 120.09913 * 180.28207 * 6 5 4 8 8 C 1.39743 * 119.96810 * 359.41425 * 7 6 5 9 9 C 1.47598 * 120.06851 * 180.25882 * 8 7 6 10 10 O 1.21589 * 119.99555 * 8.83989 * 9 8 7 11 11 N 1.34777 * 120.00077 * 188.83455 * 9 8 7 12 12 C 1.47019 * 125.64751 * 354.15641 * 11 9 8 13 13 C 1.54330 * 107.26338 * 178.84696 * 12 11 9 14 14 C 1.55154 * 103.02307 * 338.13846 * 13 12 11 15 15 H 1.08993 * 111.00864 * 277.23149 * 14 13 12 16 16 N 1.46503 * 111.00566 * 153.37792 * 14 13 12 17 17 C 1.36936 * 120.00091 * 161.35362 * 16 14 13 18 18 H 1.08001 * 119.99859 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00236 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00481 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00024 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47045 * 89.99554 * 21 19 17 23 23 H 1.48500 * 109.47154 * 210.00036 * 21 19 17 24 24 H 1.48499 * 109.46649 * 330.00120 * 21 19 17 25 25 C 1.47422 * 125.64764 * 174.46093 * 11 9 8 26 26 C 1.39753 * 119.86696 * 0.28346 * 8 7 6 27 27 C 1.37877 * 119.89446 * 359.97438 * 26 8 7 28 28 F 1.35104 * 119.97923 * 179.97438 * 27 26 8 29 29 H 1.09001 * 109.46897 * 270.00222 * 1 2 3 30 30 H 1.08997 * 109.46925 * 30.00413 * 1 2 3 31 31 H 1.08998 * 109.46731 * 150.00826 * 1 2 3 32 32 H 0.96993 * 119.99805 * 2.88066 * 4 2 1 33 33 H 1.07994 * 119.95165 * 359.97352 * 6 5 4 34 34 H 1.07996 * 120.01423 * 179.69507 * 7 6 5 35 35 H 1.08997 * 109.88246 * 298.39227 * 12 11 9 36 36 H 1.09005 * 109.88548 * 59.56121 * 12 11 9 37 37 H 1.09005 * 110.84899 * 219.67267 * 13 12 11 38 38 H 1.09004 * 110.51933 * 96.45379 * 13 12 11 39 39 H 0.97006 * 119.99734 * 341.35554 * 16 14 13 40 40 H 0.96996 * 120.00307 * 180.02562 * 20 19 17 41 41 H 1.09003 * 110.36918 * 322.93543 * 25 11 9 42 42 H 1.09000 * 110.36711 * 85.14523 * 25 11 9 43 43 H 1.08000 * 120.05243 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5751 -1.1680 0.0613 6 6 4.2921 -0.0864 -0.4391 7 6 5.6680 -0.0861 -0.3862 8 6 6.3450 -1.1685 0.1821 9 6 7.8196 -1.1679 0.2451 10 8 8.4401 -0.1640 -0.0475 11 7 8.4783 -2.2800 0.6270 12 6 7.8562 -3.5169 1.1215 13 6 8.9943 -4.5197 1.4062 14 6 10.1578 -3.9864 0.5293 15 1 10.0613 -4.3315 -0.5001 16 7 11.4561 -4.3693 1.0898 17 6 12.5765 -4.3417 0.3030 18 1 12.5032 -4.0372 -0.7306 19 6 13.8065 -4.7050 0.8339 20 7 14.8834 -4.6790 0.0776 21 14 13.9335 -5.2310 2.6219 22 1 13.7361 -6.6995 2.7211 23 1 15.2757 -4.8752 3.1484 24 1 12.8895 -4.5364 3.4174 25 6 9.9420 -2.4553 0.6241 26 6 5.6229 -2.2518 0.6902 27 6 4.2455 -2.2487 0.6295 28 9 3.5458 -3.2953 1.1198 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5137 32 1 1.6969 -2.0067 -0.0413 33 1 3.7691 0.7523 -0.8744 34 1 6.2236 0.7523 -0.7797 35 1 7.3018 -3.3126 2.0374 36 1 7.1870 -3.9241 0.3635 37 1 8.7102 -5.5264 1.0992 38 1 9.2662 -4.4996 2.4616 39 1 11.5219 -4.6425 2.0182 40 1 15.7428 -4.9332 0.4485 41 1 10.3822 -1.9560 -0.2391 42 1 10.3725 -2.0662 1.5468 43 1 6.1431 -3.0900 1.1297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019889147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:02 Heat of formation + Delta-G solvation = -36.532993 kcal Electronic energy + Delta-G solvation = -28135.323113 eV Core-core repulsion = 23903.824885 eV Total energy + Delta-G solvation = -4231.498229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.29865 -41.08331 -40.25720 -38.34556 -37.35125 -35.37601 -34.41574 -32.09715 -31.36803 -30.89326 -30.09208 -29.37695 -27.74703 -25.06448 -23.73438 -22.86394 -22.56233 -21.06242 -20.50114 -19.91358 -18.56958 -18.10157 -17.72405 -17.10917 -16.88043 -16.36492 -16.07338 -15.79949 -15.68893 -15.31509 -14.84346 -14.58451 -14.21700 -14.05932 -13.98657 -13.55290 -13.38592 -13.29780 -13.07742 -12.92381 -12.73209 -12.60856 -12.53929 -12.36106 -12.08994 -11.54726 -11.25893 -11.00847 -10.89885 -10.77169 -10.53513 -10.33410 -10.10992 -9.85187 -9.66629 -9.22975 -9.07531 -8.65205 -8.42762 -7.41818 -5.84790 -3.23589 0.36542 0.85029 1.92652 2.39141 2.71681 3.01062 3.32236 3.34132 3.41116 3.52584 3.73303 4.06417 4.24029 4.45757 4.51388 4.55806 4.65552 4.74940 4.80093 4.88501 4.94657 5.02886 5.10285 5.23902 5.25357 5.43320 5.49570 5.54399 5.63270 5.73219 5.74676 5.81085 5.90943 6.01132 6.05671 6.18908 6.37073 6.46675 6.51581 6.70842 6.71570 7.46012 7.59420 7.88927 8.20306 8.33395 9.09570 9.81266 9.98543 11.32736 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.030086 B = 0.002248 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.445515 B =12455.259580 C =13089.987375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.511 3.489 3 O -0.519 6.519 4 N -0.668 5.668 5 C 0.133 3.867 6 C -0.116 4.116 7 C -0.048 4.048 8 C -0.115 4.115 9 C 0.569 3.431 10 O -0.534 6.534 11 N -0.607 5.607 12 C 0.092 3.908 13 C -0.146 4.146 14 C 0.178 3.822 15 H 0.075 0.925 16 N -0.735 5.735 17 C -0.254 4.254 18 H 0.093 0.907 19 C 0.010 3.990 20 N -0.928 5.928 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.083 3.917 26 C -0.138 4.138 27 C 0.059 3.941 28 F -0.136 7.136 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.416 0.584 33 H 0.163 0.837 34 H 0.147 0.853 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.365 0.635 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.243 3.521 1.310 32.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.301 3.699 3 O -0.394 6.394 4 N -0.313 5.313 5 C 0.037 3.963 6 C -0.136 4.136 7 C -0.068 4.068 8 C -0.119 4.119 9 C 0.358 3.642 10 O -0.412 6.412 11 N -0.341 5.341 12 C -0.031 4.031 13 C -0.185 4.185 14 C 0.066 3.934 15 H 0.093 0.907 16 N -0.377 5.377 17 C -0.384 4.384 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.574 5.574 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.042 4.042 26 C -0.157 4.157 27 C 0.037 3.963 28 F -0.115 7.115 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.253 0.747 33 H 0.181 0.819 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -31.411 4.862 0.960 31.799 hybrid contribution -0.213 -1.061 1.456 1.814 sum -31.623 3.802 2.416 31.943 Atomic orbital electron populations 1.21900 0.90053 1.05573 1.05461 1.21113 0.91128 0.82792 0.74907 1.90712 1.70117 1.31292 1.47268 1.43491 1.04545 1.10634 1.72625 1.18006 0.83300 0.95794 0.99217 1.21419 0.93497 0.98718 0.99970 1.21316 0.93341 0.97168 0.94950 1.19832 0.93423 0.95531 1.03091 1.17723 0.86330 0.82333 0.77778 1.90806 1.68748 1.31732 1.49909 1.48398 1.09100 1.12957 1.63597 1.22492 0.96692 0.85425 0.98525 1.23020 0.95313 0.98455 1.01696 1.21280 0.85007 0.90249 0.96884 0.90730 1.42644 1.03521 1.80493 1.11028 1.19068 0.84745 1.39280 0.95281 0.88935 1.24694 0.95386 1.01079 0.97537 1.69696 0.98701 1.53701 1.35338 0.86556 0.77128 0.78639 0.86199 1.20942 1.21616 1.20274 1.23405 0.77165 1.00839 1.02752 1.22653 0.91972 1.00990 1.00067 1.17229 0.89868 0.86478 1.02737 1.91489 1.78801 1.55337 1.85866 0.88169 0.88131 0.89675 0.74744 0.81936 0.83523 0.90744 0.90434 0.89573 0.90428 0.80193 0.92871 0.90347 0.91244 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 10.30 36.00 0.37 -0.07 16 2 C 0.51 3.65 7.81 -10.98 -0.09 3.56 16 3 O -0.52 -5.84 14.12 5.56 0.08 -5.76 16 4 N -0.67 -4.48 5.27 -9.80 -0.05 -4.53 16 5 C 0.13 1.29 6.43 -83.64 -0.54 0.75 16 6 C -0.12 -1.26 8.73 -39.47 -0.34 -1.60 16 7 C -0.05 -0.58 9.58 -39.22 -0.38 -0.95 16 8 C -0.11 -1.47 5.87 -104.95 -0.62 -2.08 16 9 C 0.57 9.11 7.79 -12.44 -0.10 9.01 16 10 O -0.53 -10.46 16.67 5.29 0.09 -10.37 16 11 N -0.61 -9.15 3.33 -175.27 -0.58 -9.73 16 12 C 0.09 1.03 4.87 -3.06 -0.01 1.02 16 13 C -0.15 -1.87 6.57 -24.89 -0.16 -2.04 16 14 C 0.18 3.13 3.69 -65.78 -0.24 2.89 16 15 H 0.07 1.36 8.13 -51.93 -0.42 0.93 16 16 N -0.74 -16.27 5.08 -51.35 -0.26 -16.53 16 17 C -0.25 -6.89 10.47 -15.06 -0.16 -7.05 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -28.54 13.97 55.49 0.78 -27.77 16 21 Si 0.88 21.34 27.74 -169.99 -4.71 16.63 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.23 6.52 56.52 0.37 -5.87 16 25 C 0.08 1.49 6.58 -2.53 -0.02 1.47 16 26 C -0.14 -1.46 8.55 -39.15 -0.33 -1.79 16 27 C 0.06 0.57 7.29 -39.32 -0.29 0.29 16 28 F -0.14 -1.22 16.83 2.25 0.04 -1.18 16 29 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.42 1.55 8.49 -40.82 -0.35 1.21 16 33 H 0.16 1.79 5.68 -52.49 -0.30 1.50 16 34 H 0.15 1.76 7.67 -52.49 -0.40 1.35 16 35 H 0.07 0.70 6.80 -51.93 -0.35 0.35 16 36 H 0.08 0.73 6.67 -51.93 -0.35 0.38 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.98 8.00 -51.93 -0.42 0.57 16 39 H 0.36 7.85 5.57 -40.82 -0.23 7.62 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.18 1.62 2.78 -57.09 -0.16 1.46 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -35.23 358.73 -7.32 -42.54 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.10 Total: 7.72 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -3.00 Total: 3.58 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.12 Total: -58.56 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.17 Total: -16.13 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.23 -7.32 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019889147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.010 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds