Wall clock time and date at job start Tue Mar 31 2020 18:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 119.99987 * 2 1 4 4 N 1.34784 * 120.00220 * 179.97438 * 2 1 3 5 5 C 1.39550 * 120.00153 * 182.88060 * 4 2 1 6 6 C 1.39076 * 119.93206 * 332.43892 * 5 4 2 7 7 C 1.37695 * 120.09913 * 180.28207 * 6 5 4 8 8 C 1.39743 * 119.96810 * 359.41425 * 7 6 5 9 9 C 1.47598 * 120.06851 * 180.25882 * 8 7 6 10 10 O 1.21589 * 119.99555 * 8.83989 * 9 8 7 11 11 N 1.34777 * 120.00077 * 188.83455 * 9 8 7 12 12 C 1.47019 * 125.64751 * 354.15641 * 11 9 8 13 13 C 1.54330 * 107.26338 * 178.84696 * 12 11 9 14 14 C 1.55154 * 103.02307 * 338.13846 * 13 12 11 15 15 H 1.08993 * 111.00864 * 277.23149 * 14 13 12 16 16 N 1.46503 * 111.00566 * 153.37792 * 14 13 12 17 17 C 1.36936 * 120.00091 * 161.35362 * 16 14 13 18 18 H 1.08001 * 119.99859 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00236 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00481 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00024 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47045 * 89.99554 * 21 19 17 23 23 H 1.48500 * 109.47154 * 210.00036 * 21 19 17 24 24 H 1.48499 * 109.46649 * 330.00120 * 21 19 17 25 25 C 1.47422 * 125.64764 * 174.46093 * 11 9 8 26 26 C 1.39753 * 119.86696 * 0.28346 * 8 7 6 27 27 C 1.37877 * 119.89446 * 359.97438 * 26 8 7 28 28 F 1.35104 * 119.97923 * 179.97438 * 27 26 8 29 29 H 1.09001 * 109.46897 * 270.00222 * 1 2 3 30 30 H 1.08997 * 109.46925 * 30.00413 * 1 2 3 31 31 H 1.08998 * 109.46731 * 150.00826 * 1 2 3 32 32 H 0.96993 * 119.99805 * 2.88066 * 4 2 1 33 33 H 1.07994 * 119.95165 * 359.97352 * 6 5 4 34 34 H 1.07996 * 120.01423 * 179.69507 * 7 6 5 35 35 H 1.08997 * 109.88246 * 298.39227 * 12 11 9 36 36 H 1.09005 * 109.88548 * 59.56121 * 12 11 9 37 37 H 1.09005 * 110.84899 * 219.67267 * 13 12 11 38 38 H 1.09004 * 110.51933 * 96.45379 * 13 12 11 39 39 H 0.97006 * 119.99734 * 341.35554 * 16 14 13 40 40 H 0.96996 * 120.00307 * 180.02562 * 20 19 17 41 41 H 1.09003 * 110.36918 * 322.93543 * 25 11 9 42 42 H 1.09000 * 110.36711 * 85.14523 * 25 11 9 43 43 H 1.08000 * 120.05243 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5751 -1.1680 0.0613 6 6 4.2921 -0.0864 -0.4391 7 6 5.6680 -0.0861 -0.3862 8 6 6.3450 -1.1685 0.1821 9 6 7.8196 -1.1679 0.2451 10 8 8.4401 -0.1640 -0.0475 11 7 8.4783 -2.2800 0.6270 12 6 7.8562 -3.5169 1.1215 13 6 8.9943 -4.5197 1.4062 14 6 10.1578 -3.9864 0.5293 15 1 10.0613 -4.3315 -0.5001 16 7 11.4561 -4.3693 1.0898 17 6 12.5765 -4.3417 0.3030 18 1 12.5032 -4.0372 -0.7306 19 6 13.8065 -4.7050 0.8339 20 7 14.8834 -4.6790 0.0776 21 14 13.9335 -5.2310 2.6219 22 1 13.7361 -6.6995 2.7211 23 1 15.2757 -4.8752 3.1484 24 1 12.8895 -4.5364 3.4174 25 6 9.9420 -2.4553 0.6241 26 6 5.6229 -2.2518 0.6902 27 6 4.2455 -2.2487 0.6295 28 9 3.5458 -3.2953 1.1198 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5137 32 1 1.6969 -2.0067 -0.0413 33 1 3.7691 0.7523 -0.8744 34 1 6.2236 0.7523 -0.7797 35 1 7.3018 -3.3126 2.0374 36 1 7.1870 -3.9241 0.3635 37 1 8.7102 -5.5264 1.0992 38 1 9.2662 -4.4996 2.4616 39 1 11.5219 -4.6425 2.0182 40 1 15.7428 -4.9332 0.4485 41 1 10.3822 -1.9560 -0.2391 42 1 10.3725 -2.0662 1.5468 43 1 6.1431 -3.0900 1.1297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019889147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:01 Heat of formation + Delta-G solvation = -62.348729 kcal Electronic energy + Delta-G solvation = -28136.442568 eV Core-core repulsion = 23903.824885 eV Total energy + Delta-G solvation = -4232.617683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.03114 -41.90325 -41.25801 -39.32656 -38.61674 -36.29615 -35.95182 -33.73035 -32.40062 -31.71040 -31.42415 -30.11794 -29.00236 -26.26087 -25.13744 -23.93601 -23.65579 -21.91623 -21.71279 -21.09322 -19.83471 -19.22096 -18.87980 -18.00884 -17.72967 -17.52782 -17.02731 -16.63031 -16.44377 -16.36950 -16.29556 -15.64329 -15.56932 -15.34606 -14.93174 -14.74275 -14.56325 -14.35001 -14.05621 -13.94084 -13.75803 -13.61610 -13.37185 -13.26068 -13.07255 -13.00139 -12.89993 -12.47170 -12.10124 -11.95879 -11.84952 -11.79243 -11.54445 -11.30564 -11.03629 -10.85471 -10.07339 -9.83259 -9.40378 -9.30107 -8.03276 -5.40012 -0.53142 0.01486 1.28403 1.39501 1.44311 1.50869 1.68723 1.80282 1.87763 2.48661 2.55465 2.90089 3.24034 3.30771 3.39371 3.56104 3.69453 3.78060 3.90216 4.01352 4.05054 4.15059 4.26488 4.31607 4.46657 4.47514 4.52764 4.58686 4.64504 4.79928 4.84078 4.90564 4.93510 4.99966 5.06835 5.16021 5.18323 5.23689 5.32171 5.67683 5.75527 6.19990 6.22049 6.40117 6.94161 6.96333 7.05640 7.78003 7.98317 9.17766 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.030086 B = 0.002248 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.445515 B =12455.259580 C =13089.987375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.507 3.493 3 O -0.565 6.565 4 N -0.658 5.658 5 C 0.142 3.858 6 C -0.122 4.122 7 C -0.054 4.054 8 C -0.131 4.131 9 C 0.565 3.435 10 O -0.585 6.585 11 N -0.606 5.606 12 C 0.087 3.913 13 C -0.131 4.131 14 C 0.168 3.832 15 H 0.065 0.935 16 N -0.736 5.736 17 C -0.239 4.239 18 H 0.054 0.946 19 C -0.064 4.064 20 N -0.983 5.983 21 Si 0.959 3.041 22 H -0.272 1.272 23 H -0.301 1.301 24 H -0.248 1.248 25 C 0.091 3.909 26 C -0.124 4.124 27 C 0.065 3.935 28 F -0.125 7.125 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.433 0.567 33 H 0.159 0.841 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.372 0.628 40 H 0.258 0.742 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.613 1.394 3.613 36.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.299 3.701 3 O -0.443 6.443 4 N -0.304 5.304 5 C 0.044 3.956 6 C -0.142 4.142 7 C -0.074 4.074 8 C -0.135 4.135 9 C 0.356 3.644 10 O -0.467 6.467 11 N -0.338 5.338 12 C -0.034 4.034 13 C -0.169 4.169 14 C 0.058 3.942 15 H 0.083 0.917 16 N -0.379 5.379 17 C -0.370 4.370 18 H 0.072 0.928 19 C -0.255 4.255 20 N -0.632 5.632 21 Si 0.786 3.214 22 H -0.197 1.197 23 H -0.228 1.228 24 H -0.172 1.172 25 C -0.035 4.035 26 C -0.143 4.143 27 C 0.043 3.957 28 F -0.103 7.103 29 H 0.134 0.866 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.273 0.727 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.206 0.794 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -35.906 2.683 3.280 36.155 hybrid contribution 0.994 -0.338 0.624 1.221 sum -34.912 2.346 3.903 35.208 Atomic orbital electron populations 1.21958 0.86077 1.07134 1.06882 1.22041 0.92890 0.81934 0.73265 1.90703 1.71360 1.32944 1.49297 1.43577 1.03319 1.11685 1.71807 1.18100 0.84831 0.95015 0.97617 1.21348 0.92884 0.99329 1.00626 1.21269 0.93933 0.96933 0.95222 1.19498 0.91250 0.97112 1.05640 1.18254 0.87662 0.81697 0.76757 1.90772 1.70035 1.33667 1.52223 1.48393 1.07806 1.14209 1.63405 1.22865 0.96570 0.83171 1.00804 1.22992 0.92857 1.00011 1.01047 1.21440 0.85024 0.90034 0.97680 0.91683 1.42553 1.03713 1.80688 1.10913 1.18995 0.86586 1.37150 0.94235 0.92816 1.25589 0.94915 1.02200 1.02808 1.69898 0.99361 1.56111 1.37857 0.85355 0.77137 0.78785 0.80122 1.19738 1.22809 1.17219 1.23018 0.79354 1.00633 1.00523 1.22709 0.92267 1.00343 0.98954 1.17075 0.89566 0.86618 1.02446 1.91525 1.78463 1.54729 1.85632 0.86587 0.88077 0.86636 0.72712 0.82382 0.84738 0.87466 0.87558 0.86776 0.89391 0.79364 0.93291 0.93929 0.92494 0.78656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.29 10.30 71.23 0.73 0.45 16 2 C 0.51 6.09 7.81 87.65 0.68 6.78 16 3 O -0.56 -12.30 14.12 -3.03 -0.04 -12.34 16 4 N -0.66 -6.87 5.27 -303.32 -1.60 -8.47 16 5 C 0.14 2.42 6.43 38.37 0.25 2.66 16 6 C -0.12 -2.58 8.73 22.34 0.19 -2.38 16 7 C -0.05 -1.31 9.58 22.51 0.22 -1.10 16 8 C -0.13 -3.24 5.87 -20.08 -0.12 -3.36 16 9 C 0.57 18.32 7.79 86.71 0.68 19.00 16 10 O -0.59 -24.31 16.67 -4.00 -0.07 -24.38 16 11 N -0.61 -17.78 3.33 -826.69 -2.75 -20.53 16 12 C 0.09 1.62 4.87 86.73 0.42 2.05 16 13 C -0.13 -2.85 6.57 31.78 0.21 -2.64 16 14 C 0.17 5.82 3.69 46.38 0.17 5.99 16 15 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 16 N -0.74 -32.12 5.08 -316.39 -1.61 -33.73 16 17 C -0.24 -13.30 10.47 84.03 0.88 -12.42 16 18 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 19 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 20 N -0.98 -62.77 13.97 21.65 0.30 -62.47 16 21 Si 0.96 44.02 27.74 68.60 1.90 45.92 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.25 -10.06 6.52 99.48 0.65 -9.41 16 25 C 0.09 3.32 6.58 86.86 0.57 3.89 16 26 C -0.12 -2.23 8.55 22.55 0.19 -2.04 16 27 C 0.06 1.04 7.29 22.44 0.16 1.21 16 28 F -0.12 -1.66 16.83 44.97 0.76 -0.91 16 29 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.10 0.24 8.14 -2.39 -0.02 0.23 16 31 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.43 1.50 8.49 -92.71 -0.79 0.72 16 33 H 0.16 3.55 5.68 -2.91 -0.02 3.53 16 34 H 0.13 3.52 7.67 -2.91 -0.02 3.49 16 35 H 0.11 1.43 6.80 -2.39 -0.02 1.41 16 36 H 0.11 1.47 6.67 -2.38 -0.02 1.45 16 37 H 0.11 1.93 8.14 -2.38 -0.02 1.92 16 38 H 0.09 1.81 8.00 -2.38 -0.02 1.79 16 39 H 0.37 15.12 5.57 -92.70 -0.52 14.61 16 40 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.04 1.83 8.09 -2.39 -0.02 1.81 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.20 2.63 2.78 -7.24 -0.02 2.61 16 Total: -1.00 -82.81 358.73 2.33 -80.48 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.28 Total: 21.55 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 5.71 Total: 14.87 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -5.65 Total: -125.20 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.11 Total: -36.72 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.76 Total: -0.91 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.90 Total: 45.92 kcal Total: -82.81 2.33 -80.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019889147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.131 kcal (2) G-P(sol) polarization free energy of solvation -82.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds