Wall clock time and date at job start Tue Mar 31 2020 18:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21276 * 120.00080 * 2 1 4 4 N 1.34777 * 119.99910 * 180.02562 * 2 1 3 5 5 C 1.39297 * 120.00126 * 185.52391 * 4 2 1 6 6 C 1.38769 * 120.15192 * 24.85502 * 5 4 2 7 7 C 1.38101 * 120.14476 * 180.02562 * 6 5 4 8 8 C 1.38433 * 120.44855 * 359.97438 * 7 6 5 9 9 C 1.38149 * 120.29654 * 359.78372 * 8 7 6 10 10 F 1.35100 * 120.07183 * 180.23966 * 9 8 7 11 11 C 1.39941 * 119.85238 * 0.47084 * 9 8 7 12 12 C 1.47372 * 120.22109 * 179.79245 * 11 9 8 13 13 O 1.21614 * 119.99366 * 269.72056 * 12 11 9 14 14 N 1.34770 * 120.00562 * 89.71898 * 12 11 9 15 15 C 1.46502 * 120.00748 * 180.02562 * 14 12 11 16 16 H 1.09005 * 112.84330 * 336.20078 * 15 14 12 17 17 C 1.53773 * 113.61714 * 107.49953 * 15 14 12 18 18 C 1.53776 * 87.08090 * 89.11904 * 17 15 14 19 19 H 1.09000 * 113.69328 * 270.87729 * 18 17 15 20 20 N 1.46502 * 113.61416 * 139.98047 * 18 17 15 21 21 C 1.36938 * 119.99780 * 107.50578 * 20 18 17 22 22 H 1.07999 * 120.00189 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99518 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00217 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99698 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47108 * 0.02562 * 25 23 21 27 27 H 1.48492 * 109.47168 * 120.00378 * 25 23 21 28 28 H 1.48505 * 109.46871 * 240.00485 * 25 23 21 29 29 C 1.53775 * 113.61948 * 205.00219 * 15 14 12 30 30 H 1.08997 * 109.46767 * 269.99395 * 1 2 3 31 31 H 1.08998 * 109.47281 * 29.99494 * 1 2 3 32 32 H 1.09004 * 109.47286 * 149.99834 * 1 2 3 33 33 H 0.97007 * 120.00040 * 5.51714 * 4 2 1 34 34 H 1.08006 * 119.92560 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.77611 * 180.02562 * 7 6 5 36 36 H 1.07996 * 119.84968 * 180.02562 * 8 7 6 37 37 H 0.97006 * 119.99476 * 0.02562 * 14 12 11 38 38 H 1.08997 * 113.61551 * 203.66930 * 17 15 14 39 39 H 1.09007 * 113.61366 * 334.57491 * 17 15 14 40 40 H 0.97001 * 120.00073 * 287.50220 * 20 18 17 41 41 H 0.97003 * 119.99721 * 179.97438 * 24 23 21 42 42 H 1.09004 * 113.61449 * 25.43016 * 29 15 14 43 43 H 1.08993 * 113.61870 * 156.24452 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5690 -1.1701 0.1156 6 6 4.2194 -0.1086 0.7286 7 6 5.5956 -0.1114 0.8432 8 6 6.3385 -1.1701 0.3497 9 6 5.7096 -2.2387 -0.2595 10 9 6.4387 -3.2718 -0.7351 11 6 4.3160 -2.2463 -0.3871 12 6 3.6371 -3.3800 -1.0396 13 8 3.4351 -3.3591 -2.2387 14 7 3.2402 -4.4397 -0.3077 15 6 2.5658 -5.5669 -0.9564 16 1 2.0806 -5.2882 -1.8919 17 6 3.4394 -6.8277 -1.0652 18 6 2.8955 -7.2283 0.3162 19 1 3.4866 -6.8447 1.1478 20 7 2.6017 -8.6583 0.4390 21 6 3.4133 -9.4616 1.1948 22 1 4.2698 -9.0409 1.7006 23 6 3.1345 -10.8165 1.3116 24 7 2.0904 -11.3291 0.6955 25 14 4.2413 -11.9122 2.3431 26 1 5.3377 -11.0987 2.9273 27 1 3.4473 -12.5294 3.4357 28 1 4.8183 -12.9794 1.4867 29 6 1.6606 -6.3715 -0.0087 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3634 -0.8900 -0.5139 33 1 1.6992 -2.0053 -0.0817 34 1 3.6480 0.7216 1.1169 35 1 6.0956 0.7177 1.3217 36 1 7.4142 -1.1625 0.4449 37 1 3.4011 -4.4561 0.6488 38 1 3.1358 -7.5015 -1.8663 39 1 4.5093 -6.6186 -1.0693 40 1 1.8322 -9.0361 -0.0150 41 1 1.8959 -12.2759 0.7769 42 1 1.2942 -5.7940 0.8401 43 1 0.8697 -6.9194 -0.5208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020673299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:52 Heat of formation + Delta-G solvation = -74.920777 kcal Electronic energy + Delta-G solvation = -28436.688526 eV Core-core repulsion = 24203.525678 eV Total energy + Delta-G solvation = -4233.162848 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.13055 -42.07901 -41.06714 -39.68268 -38.86081 -36.03567 -35.81381 -34.25763 -32.37415 -31.85157 -31.48184 -29.61483 -26.68414 -26.51710 -25.32924 -24.31903 -23.73662 -22.11238 -21.68918 -20.46151 -19.64103 -19.17916 -18.75509 -18.52376 -17.50732 -17.23413 -16.86464 -16.82458 -16.60492 -16.51102 -16.13901 -15.86683 -15.61882 -15.46995 -15.09155 -14.95057 -14.35852 -14.30808 -13.83834 -13.61295 -13.49122 -13.46157 -13.33059 -13.26343 -12.99275 -12.88498 -12.85301 -12.62732 -12.12129 -11.88178 -11.78827 -11.74743 -11.25040 -11.23845 -11.01840 -10.86634 -10.19821 -10.02637 -9.34481 -8.99740 -7.95928 -5.24039 -0.23992 -0.01655 1.19124 1.41154 1.47222 1.48117 1.57593 1.80917 1.92174 2.44649 2.55770 3.07979 3.35659 3.42635 3.60633 3.65773 3.76950 3.81999 3.90554 3.94742 4.19852 4.22381 4.30324 4.31128 4.45442 4.61629 4.63965 4.71713 4.86523 4.88861 4.90439 4.99675 5.05798 5.09574 5.16199 5.18408 5.19580 5.27689 5.49522 5.62728 5.74369 6.14191 6.26480 6.30369 6.86197 6.94631 7.33209 8.09532 8.31816 9.27365 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.002686 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.402108 B =10423.291804 C =11363.205005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.512 3.488 3 O -0.555 6.555 4 N -0.666 5.666 5 C 0.206 3.794 6 C -0.152 4.152 7 C -0.039 4.039 8 C -0.167 4.167 9 C 0.132 3.868 10 F -0.143 7.143 11 C -0.214 4.214 12 C 0.569 3.431 13 O -0.564 6.564 14 N -0.684 5.684 15 C 0.132 3.868 16 H 0.099 0.901 17 C -0.177 4.177 18 C 0.151 3.849 19 H 0.080 0.920 20 N -0.726 5.726 21 C -0.243 4.243 22 H 0.076 0.924 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.969 3.031 26 H -0.266 1.266 27 H -0.292 1.292 28 H -0.297 1.297 29 C -0.135 4.135 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.421 0.579 34 H 0.157 0.843 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.415 0.585 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.094 0.906 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 27.378 2.863 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.303 3.697 3 O -0.433 6.433 4 N -0.310 5.310 5 C 0.108 3.892 6 C -0.172 4.172 7 C -0.057 4.057 8 C -0.186 4.186 9 C 0.112 3.888 10 F -0.121 7.121 11 C -0.221 4.221 12 C 0.355 3.645 13 O -0.442 6.442 14 N -0.334 5.334 15 C 0.026 3.974 16 H 0.117 0.883 17 C -0.219 4.219 18 C 0.041 3.959 19 H 0.098 0.902 20 N -0.363 5.363 21 C -0.375 4.375 22 H 0.094 0.906 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.799 3.201 26 H -0.190 1.190 27 H -0.219 1.219 28 H -0.224 1.224 29 C -0.174 4.174 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.259 0.741 34 H 0.175 0.825 35 H 0.195 0.805 36 H 0.185 0.815 37 H 0.252 0.748 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.244 28.029 2.143 28.112 hybrid contribution 0.422 -2.109 0.123 2.155 sum 0.666 25.919 2.266 26.027 Atomic orbital electron populations 1.21987 0.86586 1.06755 1.07164 1.21885 0.92707 0.81833 0.73226 1.90680 1.71352 1.32271 1.48952 1.43717 1.04444 1.11464 1.71389 1.17517 0.83757 0.93737 0.94182 1.21590 0.95889 0.98941 1.00808 1.21460 0.92477 0.97370 0.94382 1.21398 1.02812 0.92859 1.01575 1.17688 0.87074 0.86493 0.97560 1.91533 1.77046 1.57330 1.86194 1.19476 0.93148 0.99163 1.10291 1.18131 0.77869 0.82311 0.86230 1.90815 1.56471 1.81104 1.15818 1.45700 1.58382 1.17131 1.12191 1.21633 0.94135 0.84397 0.97247 0.88314 1.24196 0.99149 0.97063 1.01479 1.21977 0.95843 0.83529 0.94574 0.90211 1.42578 1.31739 1.03905 1.58116 1.19716 1.05847 0.90433 1.21488 0.90589 1.25537 0.99910 0.98535 1.02732 1.69809 1.30471 1.12449 1.49172 0.85133 0.78316 0.78806 0.77881 1.19034 1.21919 1.22411 1.23644 0.97322 0.97051 0.99395 0.85832 0.87725 0.87945 0.74073 0.82529 0.80501 0.81505 0.74839 0.90872 0.93291 0.79230 0.94023 0.88766 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.31 71.24 0.73 -0.37 16 2 C 0.51 8.06 7.74 87.66 0.68 8.74 16 3 O -0.55 -12.49 14.26 -3.02 -0.04 -12.53 16 4 N -0.67 -10.85 5.16 -302.96 -1.56 -12.41 16 5 C 0.21 4.12 6.44 38.59 0.25 4.37 16 6 C -0.15 -2.64 8.70 22.36 0.19 -2.44 16 7 C -0.04 -0.50 10.02 22.28 0.22 -0.28 16 8 C -0.17 -2.63 10.00 22.30 0.22 -2.40 16 9 C 0.13 3.03 7.29 22.66 0.17 3.19 16 10 F -0.14 -3.92 16.83 44.97 0.76 -3.16 16 11 C -0.21 -5.04 5.65 -19.95 -0.11 -5.15 16 12 C 0.57 15.56 5.81 86.65 0.50 16.06 16 13 O -0.56 -19.97 16.71 -4.07 -0.07 -20.04 16 14 N -0.68 -16.09 5.26 -443.37 -2.33 -18.42 16 15 C 0.13 3.57 4.32 45.51 0.20 3.76 16 16 H 0.10 2.78 7.46 -2.38 -0.02 2.77 16 17 C -0.18 -6.10 7.68 31.12 0.24 -5.86 16 18 C 0.15 5.44 4.36 45.52 0.20 5.64 16 19 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 20 N -0.73 -35.06 5.40 -320.45 -1.73 -36.79 16 21 C -0.24 -13.14 9.97 84.03 0.84 -12.30 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 24 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 25 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 C -0.13 -3.63 7.58 31.12 0.24 -3.40 16 30 H 0.12 0.33 8.14 -2.39 -0.02 0.32 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.42 5.59 7.90 -92.70 -0.73 4.85 16 34 H 0.16 2.78 5.78 -2.91 -0.02 2.76 16 35 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.41 7.99 8.69 -92.70 -0.81 7.18 16 38 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.38 19.45 7.93 -92.71 -0.73 18.72 16 41 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.09 2.61 8.12 -2.39 -0.02 2.59 16 Total: -1.00 -76.58 373.97 1.18 -75.40 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -1.18 Total: 32.67 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.03 Total: 5.81 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -5.34 Total: -125.67 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.11 Total: -32.57 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.76 Total: -3.16 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -76.58 1.18 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020673299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.482 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds