Wall clock time and date at job start Tue Mar 31 2020 18:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21287 * 120.00098 * 2 1 4 4 N 1.34781 * 119.99556 * 179.72393 * 2 1 3 5 5 C 1.40056 * 119.99466 * 174.86131 * 4 2 1 6 6 C 1.39033 * 119.96853 * 326.54241 * 5 4 2 7 7 C 1.38114 * 120.27537 * 179.76516 * 6 5 4 8 8 C 1.38336 * 120.19127 * 0.50883 * 7 6 5 9 9 F 1.35095 * 120.03947 * 179.76423 * 8 7 6 10 10 C 1.39815 * 119.92157 * 359.75062 * 8 7 6 11 11 C 1.47708 * 120.13187 * 179.97438 * 10 8 7 12 12 O 1.21568 * 120.00186 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99816 * 180.02562 * 11 10 8 14 14 C 1.46495 * 119.99827 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.85083 * 336.18650 * 14 13 11 16 16 C 1.53775 * 113.61735 * 107.50353 * 14 13 11 17 17 C 1.53778 * 87.08634 * 89.11506 * 16 14 13 18 18 H 1.09007 * 113.61178 * 270.88805 * 17 16 14 19 19 N 1.46493 * 113.69483 * 139.99524 * 17 16 14 20 20 C 1.36933 * 120.00292 * 107.46237 * 19 17 16 21 21 H 1.08001 * 119.99871 * 0.02562 * 20 19 17 22 22 C 1.38817 * 120.00109 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00050 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46816 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47033 * 119.99508 * 24 22 20 27 27 H 1.48495 * 109.47047 * 240.00089 * 24 22 20 28 28 C 1.53783 * 87.08043 * 25.43234 * 17 16 14 29 29 C 1.38482 * 119.95936 * 146.81959 * 5 4 2 30 30 H 1.09003 * 109.47217 * 270.27715 * 1 2 3 31 31 H 1.09000 * 109.47220 * 30.26984 * 1 2 3 32 32 H 1.08998 * 109.47610 * 150.27577 * 1 2 3 33 33 H 0.96996 * 120.00370 * 354.86607 * 4 2 1 34 34 H 1.07999 * 119.86571 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.90714 * 180.25563 * 7 6 5 36 36 H 0.96997 * 119.99972 * 359.97438 * 13 11 10 37 37 H 1.09000 * 113.61807 * 203.66668 * 16 14 13 38 38 H 1.09000 * 113.61153 * 334.55921 * 16 14 13 39 39 H 0.97009 * 119.99747 * 287.46544 * 19 17 16 40 40 H 0.97001 * 119.99619 * 179.97438 * 23 22 20 41 41 H 1.08996 * 113.61427 * 220.02310 * 28 17 16 42 42 H 1.08997 * 113.61138 * 89.11318 * 28 17 16 43 43 H 1.08006 * 120.10000 * 359.95216 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1673 0.0056 5 6 3.5771 -1.1702 -0.1030 6 6 4.2163 -0.2010 -0.8679 7 6 5.5932 -0.1950 -0.9755 8 6 6.3455 -1.1605 -0.3308 9 9 7.6919 -1.1546 -0.4420 10 6 5.7109 -2.1422 0.4361 11 6 6.5096 -3.1756 1.1259 12 8 7.7213 -3.1734 1.0278 13 7 5.8950 -4.1210 1.8642 14 6 6.6871 -5.1463 2.5479 15 1 7.6605 -5.3079 2.0848 16 6 6.7517 -4.9597 4.0729 17 6 5.4767 -5.8158 4.1528 18 1 4.5563 -5.2358 4.0828 19 7 5.4705 -6.7596 5.2731 20 6 4.6615 -6.5335 6.3545 21 1 4.0277 -5.6595 6.3813 22 6 4.6561 -7.4276 7.4163 23 7 5.4282 -8.4931 7.3834 24 14 3.5519 -7.1195 8.8913 25 1 2.7884 -5.8628 8.6839 26 1 2.6063 -8.2538 9.0472 27 1 4.3838 -6.9965 10.1152 28 6 5.9106 -6.4458 2.8187 29 6 4.3193 -2.1420 0.5470 30 1 -0.3634 0.0050 1.0277 31 1 -0.3634 0.8875 -0.5180 32 1 -0.3634 -0.8924 -0.5095 33 1 1.6987 -2.0052 0.0848 34 1 3.6339 0.5525 -1.3774 35 1 6.0838 0.5631 -1.5679 36 1 4.9282 -4.1226 1.9428 37 1 7.6215 -5.4279 4.5337 38 1 6.6058 -3.9281 4.3931 39 1 6.0396 -7.5449 5.2488 40 1 5.4246 -9.1177 8.1256 41 1 5.0857 -6.6139 2.1264 42 1 6.5505 -7.3203 2.9366 43 1 3.8230 -2.8974 1.1383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021121517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:55 Heat of formation + Delta-G solvation = -76.096138 kcal Electronic energy + Delta-G solvation = -27825.852342 eV Core-core repulsion = 23592.638526 eV Total energy + Delta-G solvation = -4233.213815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.94501 -41.77799 -41.15082 -39.68151 -38.84321 -35.81436 -35.76583 -34.37939 -32.56369 -31.67145 -31.51575 -29.25667 -26.68559 -26.50434 -25.54375 -24.11324 -23.49960 -22.61023 -21.32582 -20.45589 -19.48957 -18.98761 -18.56813 -18.45872 -17.54454 -17.25351 -16.94718 -16.84762 -16.55734 -16.15077 -15.95350 -15.74833 -15.56906 -15.40223 -14.95137 -14.79630 -14.45056 -14.22288 -14.08606 -13.74974 -13.53250 -13.43727 -13.32242 -13.25616 -12.98930 -12.84369 -12.62749 -12.59176 -12.09694 -11.85073 -11.75024 -11.46475 -11.26546 -11.20785 -10.94601 -10.84710 -10.37604 -10.06035 -9.21617 -8.98147 -7.93873 -5.22241 -0.47378 -0.07279 1.40165 1.48782 1.50093 1.59345 1.75595 1.88938 2.05273 2.55430 2.57554 3.09604 3.37872 3.40901 3.53982 3.70116 3.80486 3.83162 3.95885 3.97011 4.04760 4.28068 4.32698 4.33031 4.55019 4.57334 4.70108 4.70172 4.80932 4.90493 4.91817 4.97649 4.99736 5.12051 5.13023 5.19454 5.22085 5.24794 5.52076 5.66782 5.69991 6.28276 6.37830 6.42533 7.07731 7.09010 7.34680 8.11335 8.33302 9.29676 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.002702 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.199014 B =10361.853771 C =12502.123066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.574 6.574 4 N -0.660 5.660 5 C 0.131 3.869 6 C -0.069 4.069 7 C -0.137 4.137 8 C 0.117 3.883 9 F -0.136 7.136 10 C -0.162 4.162 11 C 0.557 3.443 12 O -0.570 6.570 13 N -0.685 5.685 14 C 0.132 3.868 15 H 0.090 0.910 16 C -0.176 4.176 17 C 0.155 3.845 18 H 0.088 0.912 19 N -0.727 5.727 20 C -0.241 4.241 21 H 0.081 0.919 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.970 3.030 25 H -0.263 1.263 26 H -0.293 1.293 27 H -0.299 1.299 28 C -0.139 4.139 29 C -0.072 4.072 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.434 0.566 34 H 0.151 0.849 35 H 0.164 0.836 36 H 0.415 0.585 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.254 15.790 -21.736 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.453 6.453 4 N -0.308 5.308 5 C 0.036 3.964 6 C -0.090 4.090 7 C -0.156 4.156 8 C 0.096 3.904 9 F -0.114 7.114 10 C -0.166 4.166 11 C 0.345 3.655 12 O -0.450 6.450 13 N -0.337 5.337 14 C 0.026 3.974 15 H 0.108 0.892 16 C -0.218 4.218 17 C 0.045 3.955 18 H 0.106 0.894 19 N -0.364 5.364 20 C -0.373 4.373 21 H 0.098 0.902 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.800 3.200 25 H -0.187 1.187 26 H -0.220 1.220 27 H -0.227 1.227 28 C -0.179 4.179 29 C -0.093 4.093 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.275 0.725 34 H 0.169 0.831 35 H 0.182 0.818 36 H 0.253 0.747 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.190 16.593 -21.682 29.507 hybrid contribution 0.030 -0.728 1.252 1.449 sum -11.160 15.865 -20.430 28.172 Atomic orbital electron populations 1.21946 0.86839 1.06947 1.06620 1.21883 0.92624 0.82251 0.73324 1.90751 1.71742 1.32938 1.49835 1.43666 1.03538 1.11291 1.72290 1.17645 0.84711 0.96928 0.97085 1.21297 0.93503 0.98250 0.95905 1.21199 0.93936 0.98899 1.01555 1.18028 0.77261 0.96440 0.98635 1.91542 1.29784 1.95906 1.94169 1.19738 0.94647 0.98284 1.03970 1.18300 0.87052 0.81459 0.78648 1.90821 1.15470 1.74905 1.63802 1.45390 1.11000 1.28257 1.49045 1.21559 0.95604 0.88254 0.91993 0.89230 1.24194 1.01599 1.00608 0.95379 1.21969 0.95588 0.91076 0.86857 0.89431 1.42612 1.49362 1.26633 1.17808 1.19749 1.15990 1.05549 0.95991 0.90159 1.25567 1.02064 0.97528 1.01784 1.69820 1.44239 1.14886 1.33188 0.85113 0.78044 0.77576 0.79272 1.18699 1.22025 1.22669 1.23670 1.00469 0.96066 0.97664 1.21106 0.90399 1.00018 0.97752 0.87043 0.88387 0.86678 0.72525 0.83144 0.81825 0.74691 0.91200 0.92762 0.79398 0.94103 0.88889 0.89407 0.81181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.34 10.31 71.24 0.73 0.39 16 2 C 0.51 5.55 7.67 87.66 0.67 6.23 16 3 O -0.57 -11.94 14.80 -3.05 -0.05 -11.98 16 4 N -0.66 -5.14 5.34 -303.57 -1.62 -6.77 16 5 C 0.13 1.82 6.27 38.08 0.24 2.06 16 6 C -0.07 -1.13 8.65 22.43 0.19 -0.93 16 7 C -0.14 -2.46 10.01 22.26 0.22 -2.24 16 8 C 0.12 2.83 7.28 22.67 0.17 2.99 16 9 F -0.14 -4.09 15.54 44.97 0.70 -3.39 16 10 C -0.16 -3.63 5.88 -20.06 -0.12 -3.75 16 11 C 0.56 15.74 7.77 86.75 0.67 16.42 16 12 O -0.57 -21.37 14.93 -3.93 -0.06 -21.43 16 13 N -0.69 -16.15 5.21 -443.04 -2.31 -18.46 16 14 C 0.13 3.77 4.32 45.52 0.20 3.96 16 15 H 0.09 2.81 7.46 -2.39 -0.02 2.79 16 16 C -0.18 -6.03 7.68 31.12 0.24 -5.79 16 17 C 0.16 5.48 4.35 45.52 0.20 5.68 16 18 H 0.09 2.83 8.10 -2.38 -0.02 2.81 16 19 N -0.73 -34.74 5.40 -320.45 -1.73 -36.47 16 20 C -0.24 -12.77 9.97 84.04 0.84 -11.93 16 21 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 23 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 24 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 28 C -0.14 -3.92 7.58 31.12 0.24 -3.69 16 29 C -0.07 -1.04 9.45 22.66 0.21 -0.82 16 30 H 0.11 0.05 8.14 -2.39 -0.02 0.04 16 31 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.43 0.05 8.82 -92.71 -0.82 -0.76 16 34 H 0.15 2.41 6.42 -2.91 -0.02 2.39 16 35 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.41 6.86 6.73 -92.71 -0.62 6.24 16 37 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.37 19.44 7.92 -92.70 -0.73 18.71 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.09 2.64 8.12 -2.39 -0.02 2.62 16 43 H 0.17 1.33 6.40 -2.91 -0.02 1.31 16 Total: -1.00 -80.39 370.86 1.33 -79.06 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -1.08 Total: 25.97 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.17 Total: 4.73 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -5.38 Total: -119.78 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.10 Total: -33.41 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.70 Total: -3.39 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -80.39 1.33 -79.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021121517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.968 kcal (2) G-P(sol) polarization free energy of solvation -80.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds