Wall clock time and date at job start Tue Mar 31 2020 18:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21289 * 119.99834 * 2 1 4 4 N 1.34778 * 119.99779 * 180.02562 * 2 1 3 5 5 C 1.40073 * 119.99670 * 184.46947 * 4 2 1 6 6 C 1.38470 * 120.00813 * 325.32853 * 5 4 2 7 7 C 1.39579 * 119.80143 * 180.32270 * 6 5 4 8 8 C 1.47732 * 120.08609 * 179.67527 * 7 6 5 9 9 O 1.21567 * 120.00335 * 359.72421 * 8 7 6 10 10 N 1.34780 * 119.99730 * 179.72237 * 8 7 6 11 11 C 1.46499 * 119.99578 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.85584 * 23.80973 * 11 10 8 13 13 C 1.53788 * 113.61146 * 155.00103 * 11 10 8 14 14 C 1.53781 * 87.07885 * 89.11590 * 13 11 10 15 15 H 1.09003 * 113.61703 * 140.06787 * 14 13 11 16 16 N 1.46505 * 113.61565 * 270.88394 * 14 13 11 17 17 C 1.36940 * 120.00160 * 203.47367 * 16 14 13 18 18 H 1.08006 * 119.99795 * 359.97438 * 17 16 14 19 19 C 1.38804 * 119.99931 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00457 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47039 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47036 * 240.00014 * 21 19 17 24 24 H 1.48491 * 109.47278 * 120.00109 * 21 19 17 25 25 C 1.53779 * 87.17398 * 25.47394 * 14 13 11 26 26 C 1.39654 * 119.81874 * 359.39913 * 7 6 5 27 27 C 1.37892 * 120.01838 * 0.27851 * 26 7 6 28 28 C 1.38506 * 120.19494 * 0.02562 * 27 26 7 29 29 F 1.35102 * 119.91276 * 179.97438 * 28 27 26 30 30 H 1.08999 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46879 * 299.99418 * 1 2 3 32 32 H 1.09005 * 109.47154 * 59.99483 * 1 2 3 33 33 H 0.96998 * 119.99958 * 4.46825 * 4 2 1 34 34 H 1.08002 * 120.10171 * 0.02562 * 6 5 4 35 35 H 0.96996 * 120.00097 * 0.02562 * 10 8 7 36 36 H 1.08999 * 113.61146 * 334.57156 * 13 11 10 37 37 H 1.08995 * 113.61843 * 203.66377 * 13 11 10 38 38 H 0.97003 * 119.99570 * 23.46887 * 16 14 13 39 39 H 0.96997 * 119.99340 * 359.97438 * 20 19 17 40 40 H 1.09000 * 113.61070 * 89.07444 * 25 14 13 41 41 H 1.08998 * 113.61454 * 219.97357 * 25 14 13 42 42 H 1.08004 * 119.98872 * 180.29796 * 26 7 6 43 43 H 1.08001 * 119.90728 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5784 -1.1691 0.0940 6 6 4.3141 -0.1577 -0.5004 7 6 5.7069 -0.1675 -0.4093 8 6 6.4983 0.9045 -1.0472 9 8 5.9369 1.7939 -1.6568 10 7 7.8428 0.8964 -0.9533 11 6 8.6276 1.9591 -1.5865 12 1 8.0577 2.8767 -1.7322 13 6 10.0007 2.1843 -0.9315 14 6 10.5500 1.1266 -1.9033 15 1 11.5332 1.3715 -2.3052 16 7 10.4714 -0.2421 -1.3867 17 6 11.3136 -1.2066 -1.8722 18 1 12.0355 -0.9584 -2.6362 19 6 11.2395 -2.5032 -1.3823 20 7 10.3601 -2.8057 -0.4508 21 14 12.3889 -3.8188 -2.0440 22 1 13.2767 -3.2266 -3.0767 23 1 11.5903 -4.9154 -2.6483 24 1 13.2128 -4.3603 -0.9337 25 6 9.3905 1.4979 -2.8428 26 6 6.3498 -1.1902 0.2915 27 6 5.6095 -2.1900 0.8863 28 6 4.2277 -2.1844 0.7909 29 9 3.5081 -3.1671 1.3754 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.6981 -2.0059 -0.0663 34 1 3.8120 0.6337 -1.0371 35 1 8.2907 0.1865 -0.4673 36 1 10.0410 1.8793 0.1141 37 1 10.4056 3.1825 -1.0982 38 1 9.8228 -0.4650 -0.7007 39 1 9.7641 -2.1223 -0.1065 40 1 9.6288 2.3088 -3.5311 41 1 8.9385 0.6391 -3.3391 42 1 7.4271 -1.1978 0.3678 43 1 6.1086 -2.9803 1.4274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023154330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:31 Heat of formation + Delta-G solvation = -45.303741 kcal Electronic energy + Delta-G solvation = -28755.402450 eV Core-core repulsion = 24523.523893 eV Total energy + Delta-G solvation = -4231.878557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.13783 -40.77770 -40.00273 -38.60834 -37.51506 -35.09649 -34.00092 -32.90940 -31.24660 -30.75455 -29.65627 -28.72117 -25.22320 -24.82787 -23.86519 -23.41062 -22.43458 -20.92818 -20.41564 -19.30607 -18.41066 -17.81064 -17.36237 -17.24326 -16.71096 -16.17472 -15.81387 -15.54785 -15.36702 -15.06818 -14.70639 -14.38359 -14.28356 -13.86967 -13.82131 -13.78623 -13.36973 -13.24854 -13.08676 -12.83143 -12.69240 -12.37180 -12.14503 -12.03736 -11.66795 -11.44375 -10.83456 -10.72226 -10.61211 -10.27430 -10.12913 -10.10020 -9.91612 -9.73935 -9.27451 -8.99703 -8.98196 -8.66572 -8.40472 -7.19159 -6.24440 -3.25133 0.58231 1.06734 2.22268 2.64139 2.86138 3.31019 3.46748 3.51953 3.61685 3.75765 3.93160 4.35175 4.55209 4.60817 4.72427 4.76661 4.94242 4.99714 5.01109 5.12878 5.15669 5.24783 5.36814 5.41028 5.42354 5.66250 5.75658 5.81635 5.89532 6.01492 6.04908 6.07611 6.16543 6.20022 6.22952 6.46512 6.61374 6.69877 6.72391 6.97333 7.00025 7.71318 7.75148 7.76959 8.41222 8.59081 9.05439 9.90631 10.04406 11.22611 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.003374 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.596295 B = 8295.831910 C =10107.137386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.508 3.492 3 O -0.518 6.518 4 N -0.670 5.670 5 C 0.096 3.904 6 C -0.038 4.038 7 C -0.126 4.126 8 C 0.562 3.438 9 O -0.539 6.539 10 N -0.696 5.696 11 C 0.122 3.878 12 H 0.095 0.905 13 C -0.167 4.167 14 C 0.169 3.831 15 H 0.068 0.932 16 N -0.716 5.716 17 C -0.331 4.331 18 H 0.070 0.930 19 C -0.043 4.043 20 N -0.940 5.940 21 Si 1.086 2.914 22 H -0.294 1.294 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.185 4.185 26 C -0.060 4.060 27 C -0.134 4.134 28 C 0.095 3.905 29 F -0.135 7.135 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.414 0.586 34 H 0.162 0.838 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.359 0.641 39 H 0.249 0.751 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.143 0.857 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.353 3.071 2.694 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.297 3.703 3 O -0.393 6.393 4 N -0.317 5.317 5 C 0.002 3.998 6 C -0.059 4.059 7 C -0.129 4.129 8 C 0.349 3.651 9 O -0.417 6.417 10 N -0.349 5.349 11 C 0.017 3.983 12 H 0.113 0.887 13 C -0.207 4.207 14 C 0.057 3.943 15 H 0.086 0.914 16 N -0.358 5.358 17 C -0.461 4.461 18 H 0.088 0.912 19 C -0.240 4.240 20 N -0.585 5.585 21 Si 0.917 3.083 22 H -0.221 1.221 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.227 4.227 26 C -0.079 4.079 27 C -0.153 4.153 28 C 0.073 3.927 29 F -0.113 7.113 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.251 0.749 34 H 0.179 0.821 35 H 0.241 0.759 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.194 0.806 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.161 0.839 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.788 2.862 2.250 16.202 hybrid contribution -0.769 0.433 0.372 0.957 sum -16.557 3.294 2.622 17.084 Atomic orbital electron populations 1.21844 0.90307 1.04630 1.05869 1.21098 0.91035 0.82987 0.75222 1.90799 1.70180 1.31078 1.47230 1.43519 1.04323 1.10403 1.73462 1.17522 0.83588 0.97565 1.01158 1.21251 0.91996 0.97343 0.95272 1.19939 0.93710 0.97103 1.02192 1.18038 0.82172 0.84906 0.79954 1.90754 1.70961 1.37294 1.42729 1.45756 1.05596 1.28539 1.55000 1.21876 0.91202 0.90455 0.94750 0.88686 1.23865 0.95491 1.00966 1.00375 1.21153 0.95986 0.84886 0.92296 0.91424 1.42243 1.42648 1.04514 1.46359 1.20156 1.14251 0.91463 1.20272 0.91242 1.25793 1.02237 0.97434 0.98571 1.70915 1.22492 1.35301 1.29826 0.83124 0.74828 0.75213 0.75120 1.22077 1.21968 1.21951 1.24317 1.00204 1.01245 0.96981 1.21348 1.00935 0.91843 0.93805 1.20995 0.90868 1.00991 1.02472 1.17696 0.89908 0.88077 0.96986 1.91484 1.77899 1.60013 1.81923 0.90252 0.88169 0.88163 0.74945 0.82077 0.75898 0.91183 0.88819 0.80566 0.93979 0.90183 0.91039 0.83900 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.39 36.01 0.37 -0.53 16 2 C 0.51 5.41 7.78 -10.98 -0.09 5.32 16 3 O -0.52 -8.02 14.51 5.55 0.08 -7.94 16 4 N -0.67 -6.77 5.22 -9.84 -0.05 -6.82 16 5 C 0.10 1.29 6.31 -83.64 -0.53 0.76 16 6 C -0.04 -0.60 8.24 -39.00 -0.32 -0.92 16 7 C -0.13 -2.06 5.87 -104.99 -0.62 -2.67 16 8 C 0.56 10.36 7.77 -12.38 -0.10 10.26 16 9 O -0.54 -11.29 15.94 5.31 0.08 -11.21 16 10 N -0.70 -12.22 5.09 -53.85 -0.27 -12.50 16 11 C 0.12 2.07 4.33 -66.97 -0.29 1.78 16 12 H 0.10 1.60 7.46 -51.93 -0.39 1.21 16 13 C -0.17 -2.65 7.58 -25.91 -0.20 -2.84 16 14 C 0.17 3.23 4.55 -67.12 -0.31 2.92 16 15 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 16 N -0.72 -16.63 5.16 -52.63 -0.27 -16.90 16 17 C -0.33 -8.78 9.97 -15.06 -0.15 -8.93 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 19 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 20 N -0.94 -26.65 13.70 55.49 0.76 -25.89 16 21 Si 1.09 24.93 29.92 -169.99 -5.09 19.84 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.19 -3.30 7.70 -25.78 -0.20 -3.50 16 26 C -0.06 -0.90 9.53 -39.18 -0.37 -1.27 16 27 C -0.13 -1.80 10.00 -39.61 -0.40 -2.20 16 28 C 0.10 1.23 7.31 -39.12 -0.29 0.94 16 29 F -0.13 -1.60 16.95 2.25 0.04 -1.56 16 30 H 0.08 0.22 7.92 -51.93 -0.41 -0.19 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.41 2.79 8.50 -40.82 -0.35 2.44 16 34 H 0.16 2.82 5.78 -52.49 -0.30 2.51 16 35 H 0.40 7.08 4.17 -40.82 -0.17 6.91 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.36 8.25 4.19 -40.82 -0.17 8.07 16 39 H 0.25 6.75 6.77 -40.82 -0.28 6.47 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.14 2.17 6.39 -52.48 -0.34 1.83 16 43 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -34.01 364.69 -7.78 -41.78 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -4.99 Total: 17.84 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -3.57 Total: -2.14 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.16 Total: -62.10 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.17 Total: -19.15 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.09 Total: 19.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.01 -7.78 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023154330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.520 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds