Wall clock time and date at job start Tue Mar 31 2020 18:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21289 * 119.99834 * 2 1 4 4 N 1.34778 * 119.99779 * 180.02562 * 2 1 3 5 5 C 1.40073 * 119.99670 * 184.46947 * 4 2 1 6 6 C 1.38470 * 120.00813 * 325.32853 * 5 4 2 7 7 C 1.39579 * 119.80143 * 180.32270 * 6 5 4 8 8 C 1.47732 * 120.08609 * 179.67527 * 7 6 5 9 9 O 1.21567 * 120.00335 * 359.72421 * 8 7 6 10 10 N 1.34780 * 119.99730 * 179.72237 * 8 7 6 11 11 C 1.46499 * 119.99578 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.85584 * 23.80973 * 11 10 8 13 13 C 1.53788 * 113.61146 * 155.00103 * 11 10 8 14 14 C 1.53781 * 87.07885 * 89.11590 * 13 11 10 15 15 H 1.09003 * 113.61703 * 140.06787 * 14 13 11 16 16 N 1.46505 * 113.61565 * 270.88394 * 14 13 11 17 17 C 1.36940 * 120.00160 * 203.47367 * 16 14 13 18 18 H 1.08006 * 119.99795 * 359.97438 * 17 16 14 19 19 C 1.38804 * 119.99931 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00457 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47039 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47036 * 240.00014 * 21 19 17 24 24 H 1.48491 * 109.47278 * 120.00109 * 21 19 17 25 25 C 1.53779 * 87.17398 * 25.47394 * 14 13 11 26 26 C 1.39654 * 119.81874 * 359.39913 * 7 6 5 27 27 C 1.37892 * 120.01838 * 0.27851 * 26 7 6 28 28 C 1.38506 * 120.19494 * 0.02562 * 27 26 7 29 29 F 1.35102 * 119.91276 * 179.97438 * 28 27 26 30 30 H 1.08999 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46879 * 299.99418 * 1 2 3 32 32 H 1.09005 * 109.47154 * 59.99483 * 1 2 3 33 33 H 0.96998 * 119.99958 * 4.46825 * 4 2 1 34 34 H 1.08002 * 120.10171 * 0.02562 * 6 5 4 35 35 H 0.96996 * 120.00097 * 0.02562 * 10 8 7 36 36 H 1.08999 * 113.61146 * 334.57156 * 13 11 10 37 37 H 1.08995 * 113.61843 * 203.66377 * 13 11 10 38 38 H 0.97003 * 119.99570 * 23.46887 * 16 14 13 39 39 H 0.96997 * 119.99340 * 359.97438 * 20 19 17 40 40 H 1.09000 * 113.61070 * 89.07444 * 25 14 13 41 41 H 1.08998 * 113.61454 * 219.97357 * 25 14 13 42 42 H 1.08004 * 119.98872 * 180.29796 * 26 7 6 43 43 H 1.08001 * 119.90728 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5784 -1.1691 0.0940 6 6 4.3141 -0.1577 -0.5004 7 6 5.7069 -0.1675 -0.4093 8 6 6.4983 0.9045 -1.0472 9 8 5.9369 1.7939 -1.6568 10 7 7.8428 0.8964 -0.9533 11 6 8.6276 1.9591 -1.5865 12 1 8.0577 2.8767 -1.7322 13 6 10.0007 2.1843 -0.9315 14 6 10.5500 1.1266 -1.9033 15 1 11.5332 1.3715 -2.3052 16 7 10.4714 -0.2421 -1.3867 17 6 11.3136 -1.2066 -1.8722 18 1 12.0355 -0.9584 -2.6362 19 6 11.2395 -2.5032 -1.3823 20 7 10.3601 -2.8057 -0.4508 21 14 12.3889 -3.8188 -2.0440 22 1 13.2767 -3.2266 -3.0767 23 1 11.5903 -4.9154 -2.6483 24 1 13.2128 -4.3603 -0.9337 25 6 9.3905 1.4979 -2.8428 26 6 6.3498 -1.1902 0.2915 27 6 5.6095 -2.1900 0.8863 28 6 4.2277 -2.1844 0.7909 29 9 3.5081 -3.1671 1.3754 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.6981 -2.0059 -0.0663 34 1 3.8120 0.6337 -1.0371 35 1 8.2907 0.1865 -0.4673 36 1 10.0410 1.8793 0.1141 37 1 10.4056 3.1825 -1.0982 38 1 9.8228 -0.4650 -0.7007 39 1 9.7641 -2.1223 -0.1065 40 1 9.6288 2.3088 -3.5311 41 1 8.9385 0.6391 -3.3391 42 1 7.4271 -1.1978 0.3678 43 1 6.1086 -2.9803 1.4274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023154330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:30 Heat of formation + Delta-G solvation = -68.554462 kcal Electronic energy + Delta-G solvation = -28756.410677 eV Core-core repulsion = 24523.523893 eV Total energy + Delta-G solvation = -4232.886784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.17284 -41.91299 -41.25717 -39.89589 -38.86403 -36.12939 -35.85700 -34.40074 -32.19825 -31.98213 -31.37362 -29.57793 -26.63992 -26.34383 -25.57797 -24.48576 -23.90311 -21.98004 -21.64590 -20.75021 -19.70719 -19.38144 -18.69710 -18.29981 -17.77380 -17.31913 -17.08825 -16.79613 -16.61179 -16.26300 -16.17391 -15.91999 -15.57201 -15.40620 -15.29524 -14.92587 -14.81229 -14.42803 -14.06621 -13.79151 -13.57498 -13.44772 -13.42242 -13.13471 -13.08924 -12.74984 -12.65156 -12.41927 -11.86929 -11.81596 -11.77330 -11.54180 -11.22847 -11.10462 -11.06830 -10.83552 -10.25083 -10.02421 -9.47898 -9.10910 -8.35604 -5.30884 -0.60941 -0.07884 1.29724 1.59288 1.61984 1.71319 1.78717 1.83277 1.99377 2.49755 2.70962 2.81644 3.33782 3.40903 3.49404 3.55959 3.69743 3.75576 3.82009 3.83299 3.96174 4.16602 4.20996 4.27502 4.43413 4.59640 4.61686 4.68261 4.74657 4.79837 4.85000 4.90014 4.95350 4.99082 5.02191 5.10505 5.13183 5.24165 5.52053 5.59714 5.69323 6.21429 6.30685 6.53553 6.95754 6.96777 7.11296 7.97942 8.08863 9.15479 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.003374 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.596295 B = 8295.831910 C =10107.137386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.502 3.498 3 O -0.573 6.573 4 N -0.660 5.660 5 C 0.102 3.898 6 C -0.050 4.050 7 C -0.140 4.140 8 C 0.559 3.441 9 O -0.572 6.572 10 N -0.694 5.694 11 C 0.117 3.883 12 H 0.100 0.900 13 C -0.143 4.143 14 C 0.151 3.849 15 H 0.069 0.931 16 N -0.727 5.727 17 C -0.333 4.333 18 H 0.066 0.934 19 C -0.096 4.096 20 N -0.965 5.965 21 Si 1.129 2.871 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.291 1.291 25 C -0.176 4.176 26 C -0.064 4.064 27 C -0.130 4.130 28 C 0.107 3.893 29 F -0.122 7.122 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.432 0.568 34 H 0.141 0.859 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.131 0.869 38 H 0.358 0.642 39 H 0.246 0.754 40 H 0.109 0.891 41 H 0.039 0.961 42 H 0.137 0.863 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.180 2.576 3.017 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.294 3.706 3 O -0.451 6.451 4 N -0.308 5.308 5 C 0.006 3.994 6 C -0.071 4.071 7 C -0.144 4.144 8 C 0.347 3.653 9 O -0.453 6.453 10 N -0.346 5.346 11 C 0.012 3.988 12 H 0.118 0.882 13 C -0.182 4.182 14 C 0.041 3.959 15 H 0.087 0.913 16 N -0.370 5.370 17 C -0.465 4.465 18 H 0.084 0.916 19 C -0.288 4.288 20 N -0.613 5.613 21 Si 0.955 3.045 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.218 1.218 25 C -0.218 4.218 26 C -0.084 4.084 27 C -0.149 4.149 28 C 0.085 3.915 29 F -0.101 7.101 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.272 0.728 34 H 0.159 0.841 35 H 0.240 0.760 36 H 0.086 0.914 37 H 0.149 0.851 38 H 0.193 0.807 39 H 0.057 0.943 40 H 0.128 0.872 41 H 0.058 0.942 42 H 0.155 0.845 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.633 2.371 2.565 16.996 hybrid contribution -0.570 0.613 0.259 0.876 sum -17.202 2.984 2.825 17.686 Atomic orbital electron populations 1.21912 0.85719 1.07216 1.06707 1.22160 0.93058 0.82001 0.73401 1.90786 1.71648 1.32997 1.49652 1.43607 1.02958 1.11531 1.72722 1.17527 0.85195 0.96607 1.00063 1.21104 0.91859 0.97893 0.96258 1.19837 0.93927 0.97299 1.03357 1.18390 0.82427 0.84968 0.79507 1.90720 1.71506 1.38675 1.44352 1.45806 1.05500 1.28599 1.54653 1.22000 0.91803 0.90363 0.94596 0.88211 1.23776 0.93717 1.01494 0.99244 1.21421 0.96534 0.83969 0.93977 0.91291 1.42353 1.42332 1.05739 1.46563 1.20403 1.14113 0.92304 1.19640 0.91643 1.26971 1.03340 0.99630 0.98893 1.70971 1.23596 1.35552 1.31143 0.82565 0.73623 0.73290 0.75022 1.20276 1.22123 1.21785 1.24255 0.99264 1.00966 0.97327 1.21270 1.00711 0.92135 0.94276 1.21176 0.91184 1.00700 1.01832 1.17571 0.89712 0.87905 0.96289 1.91519 1.77578 1.59405 1.81565 0.86836 0.87146 0.87246 0.72762 0.84106 0.75966 0.91443 0.85129 0.80728 0.94340 0.87242 0.94230 0.84515 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.39 71.24 0.74 -0.56 16 2 C 0.50 10.25 7.78 87.66 0.68 10.94 16 3 O -0.57 -18.19 14.51 -3.06 -0.04 -18.23 16 4 N -0.66 -12.43 5.22 -303.42 -1.59 -14.01 16 5 C 0.10 2.67 6.31 38.12 0.24 2.91 16 6 C -0.05 -1.64 8.24 22.65 0.19 -1.45 16 7 C -0.14 -4.80 5.87 -20.10 -0.12 -4.91 16 8 C 0.56 21.47 7.77 86.75 0.67 22.15 16 9 O -0.57 -24.99 15.94 -3.93 -0.06 -25.05 16 10 N -0.69 -25.00 5.09 -442.57 -2.25 -27.25 16 11 C 0.12 3.93 4.33 45.61 0.20 4.12 16 12 H 0.10 3.29 7.46 -2.39 -0.02 3.27 16 13 C -0.14 -4.29 7.58 31.12 0.24 -4.05 16 14 C 0.15 5.67 4.55 45.52 0.21 5.88 16 15 H 0.07 2.56 8.11 -2.39 -0.02 2.54 16 16 N -0.73 -34.02 5.16 -320.44 -1.65 -35.67 16 17 C -0.33 -17.75 9.97 84.03 0.84 -16.92 16 18 H 0.07 3.47 7.83 -2.91 -0.02 3.44 16 19 C -0.10 -5.24 5.50 84.86 0.47 -4.78 16 20 N -0.97 -55.20 13.70 21.65 0.30 -54.90 16 21 Si 1.13 50.13 29.92 68.60 2.05 52.18 16 22 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 25 C -0.18 -6.18 7.70 31.21 0.24 -5.94 16 26 C -0.06 -1.97 9.53 22.53 0.21 -1.76 16 27 C -0.13 -3.40 10.00 22.25 0.22 -3.18 16 28 C 0.11 2.63 7.31 22.57 0.17 2.80 16 29 F -0.12 -2.60 16.95 44.97 0.76 -1.84 16 30 H 0.11 0.17 7.92 -2.39 -0.02 0.15 16 31 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.43 4.73 8.50 -92.71 -0.79 3.94 16 34 H 0.14 5.25 5.78 -2.91 -0.02 5.24 16 35 H 0.40 14.62 4.17 -92.71 -0.39 14.24 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.36 16.74 4.19 -92.71 -0.39 16.35 16 39 H 0.25 13.60 6.77 -92.71 -0.63 12.97 16 40 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.14 4.34 6.39 -2.91 -0.02 4.32 16 43 H 0.17 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -75.42 364.69 2.38 -73.04 By element: Atomic # 1 Polarization: 46.81 SS G_CDS: -0.32 Total: 46.49 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.19 Total: 5.26 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -5.19 Total: -131.84 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.11 Total: -43.28 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.76 Total: -1.84 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Total: -75.42 2.38 -73.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023154330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.482 kcal (2) G-P(sol) polarization free energy of solvation -75.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds