Wall clock time and date at job start Tue Mar 31 2020 18:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21290 * 119.99754 * 2 1 4 4 N 1.34776 * 120.00267 * 179.97438 * 2 1 3 5 5 C 1.39551 * 119.99897 * 175.76533 * 4 2 1 6 6 C 1.39068 * 119.93541 * 34.62672 * 5 4 2 7 7 C 1.37691 * 120.10180 * 179.97438 * 6 5 4 8 8 C 1.39733 * 119.97248 * 0.02562 * 7 6 5 9 9 C 1.47593 * 120.07024 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00248 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00310 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00269 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.90766 * 28.69767 * 12 11 9 14 14 C 1.53779 * 113.61520 * 159.94435 * 12 11 9 15 15 C 1.53781 * 87.07770 * 89.11880 * 14 12 11 16 16 H 1.09001 * 113.61711 * 140.06922 * 15 14 12 17 17 N 1.46505 * 113.61366 * 270.88014 * 15 14 12 18 18 C 1.36934 * 120.00139 * 270.66484 * 17 15 14 19 19 H 1.07998 * 120.00160 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99432 * 179.97438 * 18 17 15 21 21 N 1.31631 * 119.99572 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00665 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47020 * 89.99358 * 22 20 18 24 24 H 1.48504 * 109.46698 * 329.99985 * 22 20 18 25 25 H 1.48498 * 109.47320 * 209.99680 * 22 20 18 26 26 C 1.53776 * 87.08446 * 25.43088 * 15 14 12 27 27 C 1.39751 * 119.86566 * 0.26918 * 8 7 6 28 28 C 1.37875 * 119.89278 * 359.43144 * 27 8 7 29 29 F 1.35101 * 119.98326 * 180.26854 * 28 27 8 30 30 H 1.09001 * 109.46632 * 239.99966 * 1 2 3 31 31 H 1.08999 * 109.47178 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.46686 * 120.00044 * 1 2 3 33 33 H 0.96999 * 120.00059 * 355.77376 * 4 2 1 34 34 H 1.08007 * 119.94810 * 359.97328 * 6 5 4 35 35 H 1.08007 * 120.01419 * 180.02562 * 7 6 5 36 36 H 0.96999 * 119.99788 * 359.97438 * 11 9 8 37 37 H 1.08998 * 113.61528 * 334.56915 * 14 12 11 38 38 H 1.09001 * 113.61359 * 203.65976 * 14 12 11 39 39 H 0.97008 * 119.99479 * 90.66680 * 17 15 14 40 40 H 0.96998 * 119.99618 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.61469 * 89.11509 * 26 15 14 42 42 H 1.08993 * 113.61757 * 220.01924 * 26 15 14 43 43 H 1.07997 * 120.05336 * 179.70214 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5736 -1.1688 -0.0887 6 6 4.3087 -0.1530 0.5128 7 6 5.6830 -0.1515 0.4273 8 6 6.3404 -1.1716 -0.2652 9 6 7.8135 -1.1724 -0.3577 10 8 8.4562 -0.2851 0.1694 11 7 8.4463 -2.1574 -1.0255 12 6 9.9084 -2.1579 -1.1178 13 1 10.3873 -1.6739 -0.2667 14 6 10.5036 -3.5341 -1.4589 15 6 10.3572 -3.1430 -2.9389 16 1 11.1978 -3.4556 -3.5584 17 7 9.0600 -3.5046 -3.5159 18 6 8.8869 -4.7332 -4.0953 19 1 9.7065 -5.4358 -4.1266 20 6 7.6576 -5.0758 -4.6415 21 7 7.4913 -6.2566 -5.1990 22 14 6.2398 -3.8609 -4.5868 23 1 6.2662 -3.0141 -5.8064 24 1 6.3716 -3.0004 -3.3837 25 1 4.9546 -4.6024 -4.5267 26 6 10.4398 -1.6781 -2.4787 27 6 5.6002 -2.1884 -0.8744 28 6 4.2246 -2.1879 -0.7801 29 9 3.5075 -3.1729 -1.3637 30 1 -0.3632 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6980 -2.0061 0.0628 34 1 3.8008 0.6360 1.0477 35 1 6.2525 0.6379 0.8953 36 1 7.9336 -2.8659 -1.4451 37 1 9.8692 -4.3697 -1.1632 38 1 11.5388 -3.6535 -1.1393 39 1 8.3238 -2.8736 -3.4875 40 1 6.6322 -6.4962 -5.5803 41 1 11.4576 -1.2900 -2.4377 42 1 9.7540 -1.0153 -3.0062 43 1 6.1050 -2.9757 -1.4144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023171627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:33 Heat of formation + Delta-G solvation = -43.857797 kcal Electronic energy + Delta-G solvation = -29017.509060 eV Core-core repulsion = 24785.693204 eV Total energy + Delta-G solvation = -4231.815856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.07387 -40.89271 -40.16111 -38.71932 -37.60163 -35.18962 -33.84155 -32.89163 -31.33344 -30.75799 -30.48225 -29.03883 -25.36528 -24.96095 -24.13339 -23.22041 -22.10832 -21.19623 -20.35830 -19.32491 -18.60749 -17.76442 -17.58221 -17.38322 -16.72167 -16.26114 -15.77973 -15.60544 -15.52287 -14.99259 -14.78802 -14.68446 -14.47636 -14.18145 -14.04200 -13.71834 -13.39896 -13.15604 -12.90572 -12.82954 -12.53248 -12.41946 -12.19031 -12.09072 -11.96612 -11.68776 -11.07279 -10.96206 -10.78583 -10.49561 -10.36043 -10.26379 -9.87226 -9.71526 -9.66524 -9.11195 -9.04312 -8.79859 -8.45946 -7.41194 -5.89316 -3.26780 0.44578 0.97256 2.04698 2.52399 2.78205 3.14336 3.24889 3.29997 3.37776 3.62540 3.89144 4.21259 4.44013 4.47945 4.66785 4.74447 4.85197 4.90551 4.95694 5.03009 5.06894 5.15098 5.23971 5.32779 5.36868 5.56065 5.61306 5.70738 5.76852 5.82999 5.99579 6.01859 6.08645 6.15974 6.21944 6.43216 6.53980 6.59024 6.67841 6.83726 6.89756 7.59982 7.69680 7.88355 8.30217 8.31177 9.06700 9.78482 9.97564 11.28491 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.004100 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.233201 B = 6828.153262 C = 8742.045474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.521 6.521 4 N -0.671 5.671 5 C 0.134 3.866 6 C -0.107 4.107 7 C -0.049 4.049 8 C -0.120 4.120 9 C 0.561 3.439 10 O -0.541 6.541 11 N -0.699 5.699 12 C 0.123 3.877 13 H 0.094 0.906 14 C -0.176 4.176 15 C 0.167 3.833 16 H 0.065 0.935 17 N -0.734 5.734 18 C -0.248 4.248 19 H 0.094 0.906 20 C 0.009 3.991 21 N -0.928 5.928 22 Si 0.878 3.122 23 H -0.283 1.283 24 H -0.278 1.278 25 H -0.287 1.287 26 C -0.166 4.166 27 C -0.102 4.102 28 C 0.067 3.933 29 F -0.131 7.131 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.416 0.584 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.409 0.591 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.360 0.640 40 H 0.261 0.739 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 9.978 13.339 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.301 3.699 3 O -0.396 6.396 4 N -0.317 5.317 5 C 0.038 3.962 6 C -0.127 4.127 7 C -0.069 4.069 8 C -0.124 4.124 9 C 0.348 3.652 10 O -0.420 6.420 11 N -0.351 5.351 12 C 0.018 3.982 13 H 0.112 0.888 14 C -0.218 4.218 15 C 0.056 3.944 16 H 0.083 0.917 17 N -0.377 5.377 18 C -0.377 4.377 19 H 0.112 0.888 20 C -0.187 4.187 21 N -0.575 5.575 22 Si 0.709 3.291 23 H -0.210 1.210 24 H -0.206 1.206 25 H -0.213 1.213 26 C -0.205 4.205 27 C -0.121 4.121 28 C 0.046 3.954 29 F -0.110 7.110 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.253 0.747 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.248 0.752 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.194 0.806 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.731 11.074 13.537 20.015 hybrid contribution -1.821 -0.379 -0.517 1.930 sum -11.552 10.696 13.021 20.430 Atomic orbital electron populations 1.21933 0.90085 1.06253 1.04883 1.21103 0.91107 0.82802 0.74864 1.90748 1.70448 1.31134 1.47259 1.43435 1.04559 1.10697 1.73000 1.17889 0.83499 0.96585 0.98225 1.21154 0.93240 0.98736 0.99589 1.21235 0.93420 0.96830 0.95386 1.19856 0.93564 0.96810 1.02167 1.18025 0.86711 0.81991 0.78518 1.90750 1.67294 1.36541 1.47385 1.45892 1.07704 1.27401 1.54141 1.21826 0.79446 0.98835 0.98075 0.88803 1.24055 1.00606 0.95925 1.01164 1.21165 0.89603 0.91882 0.91720 0.91724 1.42630 1.08442 1.16985 1.69643 1.19070 0.98176 0.90795 1.29690 0.88802 1.24671 0.97309 0.96435 1.00311 1.69687 1.24385 1.20003 1.43392 0.86765 0.83558 0.80953 0.77862 1.20986 1.20551 1.21303 1.23779 1.01518 0.98346 0.96857 1.21475 0.91964 0.99767 0.98944 1.17254 0.89582 0.89331 0.99266 1.91529 1.77688 1.59631 1.82116 0.88821 0.88273 0.88754 0.74688 0.82720 0.83410 0.75249 0.90397 0.89483 0.80626 0.92881 0.88911 0.91418 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.32 36.01 0.37 -0.43 16 2 C 0.51 4.81 7.78 -10.99 -0.09 4.72 16 3 O -0.52 -6.95 14.48 5.55 0.08 -6.87 16 4 N -0.67 -6.28 5.21 -9.80 -0.05 -6.33 16 5 C 0.13 1.68 6.31 -83.64 -0.53 1.15 16 6 C -0.11 -1.35 8.67 -39.47 -0.34 -1.69 16 7 C -0.05 -0.66 9.58 -39.22 -0.38 -1.03 16 8 C -0.12 -1.81 5.87 -104.96 -0.62 -2.43 16 9 C 0.56 9.40 7.76 -12.44 -0.10 9.30 16 10 O -0.54 -10.05 16.00 5.29 0.08 -9.97 16 11 N -0.70 -11.61 4.83 -54.04 -0.26 -11.87 16 12 C 0.12 1.93 4.25 -67.12 -0.29 1.65 16 13 H 0.09 1.43 7.59 -51.93 -0.39 1.03 16 14 C -0.18 -2.77 7.61 -25.92 -0.20 -2.97 16 15 C 0.17 3.01 4.53 -67.12 -0.30 2.71 16 16 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 17 N -0.73 -16.13 4.31 -52.64 -0.23 -16.35 16 18 C -0.25 -6.55 10.47 -15.06 -0.16 -6.71 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 20 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -27.97 13.97 55.49 0.78 -27.19 16 22 Si 0.88 21.02 27.74 -169.99 -4.71 16.31 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -5.92 4.87 56.52 0.28 -5.64 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C -0.17 -2.57 7.57 -25.92 -0.20 -2.77 16 27 C -0.10 -1.56 9.37 -39.15 -0.37 -1.92 16 28 C 0.07 0.96 7.30 -39.32 -0.29 0.67 16 29 F -0.13 -1.93 16.93 2.25 0.04 -1.90 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.42 2.69 8.64 -40.82 -0.35 2.34 16 34 H 0.16 1.87 6.18 -52.48 -0.32 1.54 16 35 H 0.15 1.84 7.64 -52.48 -0.40 1.44 16 36 H 0.41 7.11 5.21 -40.82 -0.21 6.89 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.36 7.83 4.68 -40.82 -0.19 7.63 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.15 2.44 4.91 -52.49 -0.26 2.18 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -33.43 361.79 -7.59 -41.01 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -5.20 Total: 17.29 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.56 Total: 0.41 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.24 Total: -61.75 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.16 Total: -16.83 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.43 -7.59 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023171627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.843 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds