Wall clock time and date at job start Tue Mar 31 2020 18:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21290 * 119.99754 * 2 1 4 4 N 1.34776 * 120.00267 * 179.97438 * 2 1 3 5 5 C 1.39551 * 119.99897 * 175.76533 * 4 2 1 6 6 C 1.39068 * 119.93541 * 34.62672 * 5 4 2 7 7 C 1.37691 * 120.10180 * 179.97438 * 6 5 4 8 8 C 1.39733 * 119.97248 * 0.02562 * 7 6 5 9 9 C 1.47593 * 120.07024 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00248 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00310 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00269 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.90766 * 28.69767 * 12 11 9 14 14 C 1.53779 * 113.61520 * 159.94435 * 12 11 9 15 15 C 1.53781 * 87.07770 * 89.11880 * 14 12 11 16 16 H 1.09001 * 113.61711 * 140.06922 * 15 14 12 17 17 N 1.46505 * 113.61366 * 270.88014 * 15 14 12 18 18 C 1.36934 * 120.00139 * 270.66484 * 17 15 14 19 19 H 1.07998 * 120.00160 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99432 * 179.97438 * 18 17 15 21 21 N 1.31631 * 119.99572 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00665 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47020 * 89.99358 * 22 20 18 24 24 H 1.48504 * 109.46698 * 329.99985 * 22 20 18 25 25 H 1.48498 * 109.47320 * 209.99680 * 22 20 18 26 26 C 1.53776 * 87.08446 * 25.43088 * 15 14 12 27 27 C 1.39751 * 119.86566 * 0.26918 * 8 7 6 28 28 C 1.37875 * 119.89278 * 359.43144 * 27 8 7 29 29 F 1.35101 * 119.98326 * 180.26854 * 28 27 8 30 30 H 1.09001 * 109.46632 * 239.99966 * 1 2 3 31 31 H 1.08999 * 109.47178 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.46686 * 120.00044 * 1 2 3 33 33 H 0.96999 * 120.00059 * 355.77376 * 4 2 1 34 34 H 1.08007 * 119.94810 * 359.97328 * 6 5 4 35 35 H 1.08007 * 120.01419 * 180.02562 * 7 6 5 36 36 H 0.96999 * 119.99788 * 359.97438 * 11 9 8 37 37 H 1.08998 * 113.61528 * 334.56915 * 14 12 11 38 38 H 1.09001 * 113.61359 * 203.65976 * 14 12 11 39 39 H 0.97008 * 119.99479 * 90.66680 * 17 15 14 40 40 H 0.96998 * 119.99618 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.61469 * 89.11509 * 26 15 14 42 42 H 1.08993 * 113.61757 * 220.01924 * 26 15 14 43 43 H 1.07997 * 120.05336 * 179.70214 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5736 -1.1688 -0.0887 6 6 4.3087 -0.1530 0.5128 7 6 5.6830 -0.1515 0.4273 8 6 6.3404 -1.1716 -0.2652 9 6 7.8135 -1.1724 -0.3577 10 8 8.4562 -0.2851 0.1694 11 7 8.4463 -2.1574 -1.0255 12 6 9.9084 -2.1579 -1.1178 13 1 10.3873 -1.6739 -0.2667 14 6 10.5036 -3.5341 -1.4589 15 6 10.3572 -3.1430 -2.9389 16 1 11.1978 -3.4556 -3.5584 17 7 9.0600 -3.5046 -3.5159 18 6 8.8869 -4.7332 -4.0953 19 1 9.7065 -5.4358 -4.1266 20 6 7.6576 -5.0758 -4.6415 21 7 7.4913 -6.2566 -5.1990 22 14 6.2398 -3.8609 -4.5868 23 1 6.2662 -3.0141 -5.8064 24 1 6.3716 -3.0004 -3.3837 25 1 4.9546 -4.6024 -4.5267 26 6 10.4398 -1.6781 -2.4787 27 6 5.6002 -2.1884 -0.8744 28 6 4.2246 -2.1879 -0.7801 29 9 3.5075 -3.1729 -1.3637 30 1 -0.3632 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6980 -2.0061 0.0628 34 1 3.8008 0.6360 1.0477 35 1 6.2525 0.6379 0.8953 36 1 7.9336 -2.8659 -1.4451 37 1 9.8692 -4.3697 -1.1632 38 1 11.5388 -3.6535 -1.1393 39 1 8.3238 -2.8736 -3.4875 40 1 6.6322 -6.4962 -5.5803 41 1 11.4576 -1.2900 -2.4377 42 1 9.7540 -1.0153 -3.0062 43 1 6.1050 -2.9757 -1.4144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023171627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:33 Heat of formation + Delta-G solvation = -67.028604 kcal Electronic energy + Delta-G solvation = -29018.513822 eV Core-core repulsion = 24785.693204 eV Total energy + Delta-G solvation = -4232.820617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.18905 -41.87853 -41.31676 -39.91670 -38.81138 -36.11268 -35.60483 -34.36515 -32.65578 -31.97763 -31.74731 -29.83376 -26.74426 -26.34959 -25.46604 -24.48772 -23.47447 -22.15744 -21.49870 -20.79422 -19.65725 -19.51784 -18.77829 -18.25206 -17.85355 -17.31595 -17.00272 -16.79865 -16.53118 -16.34314 -16.28678 -15.99219 -15.59356 -15.57939 -15.33306 -14.86022 -14.67065 -14.49528 -13.90904 -13.75456 -13.73731 -13.39714 -13.36704 -13.33322 -13.09099 -12.94398 -12.91299 -12.53807 -12.08775 -11.94990 -11.83502 -11.72761 -11.31342 -11.12627 -11.04436 -10.88616 -10.19636 -10.12286 -9.47442 -9.32607 -8.04809 -5.38666 -0.63488 -0.11717 1.23998 1.25329 1.34330 1.41250 1.61054 1.83020 2.02072 2.41461 2.48644 2.81350 3.25451 3.33631 3.44545 3.56920 3.64668 3.70922 3.81735 3.84070 3.96949 4.16072 4.21612 4.32025 4.44605 4.51443 4.60838 4.73332 4.78568 4.80298 4.88990 4.93287 4.97848 5.02072 5.06491 5.12154 5.21730 5.30107 5.54565 5.58432 5.80683 6.15527 6.20144 6.38344 6.88775 7.00821 7.04356 7.80179 7.97931 9.16327 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.004100 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.233201 B = 6828.153262 C = 8742.045474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.509 3.491 3 O -0.563 6.563 4 N -0.664 5.664 5 C 0.145 3.855 6 C -0.104 4.104 7 C -0.041 4.041 8 C -0.134 4.134 9 C 0.562 3.438 10 O -0.562 6.562 11 N -0.703 5.703 12 C 0.122 3.878 13 H 0.105 0.895 14 C -0.161 4.161 15 C 0.145 3.855 16 H 0.063 0.937 17 N -0.736 5.736 18 C -0.224 4.224 19 H 0.064 0.936 20 C -0.053 4.053 21 N -0.978 5.978 22 Si 0.935 3.065 23 H -0.290 1.290 24 H -0.245 1.245 25 H -0.295 1.295 26 C -0.150 4.150 27 C -0.110 4.110 28 C 0.056 3.944 29 F -0.135 7.135 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.431 0.569 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.404 0.596 37 H 0.058 0.942 38 H 0.120 0.880 39 H 0.362 0.638 40 H 0.257 0.743 41 H 0.126 0.874 42 H 0.056 0.944 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 11.823 14.884 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.301 3.699 3 O -0.441 6.441 4 N -0.311 5.311 5 C 0.048 3.952 6 C -0.124 4.124 7 C -0.061 4.061 8 C -0.138 4.138 9 C 0.350 3.650 10 O -0.442 6.442 11 N -0.354 5.354 12 C 0.017 3.983 13 H 0.123 0.877 14 C -0.202 4.202 15 C 0.036 3.964 16 H 0.081 0.919 17 N -0.380 5.380 18 C -0.355 4.355 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.629 5.629 22 Si 0.764 3.236 23 H -0.217 1.217 24 H -0.169 1.169 25 H -0.222 1.222 26 C -0.189 4.189 27 C -0.130 4.130 28 C 0.034 3.966 29 F -0.114 7.114 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.271 0.729 34 H 0.180 0.820 35 H 0.174 0.826 36 H 0.242 0.758 37 H 0.077 0.923 38 H 0.138 0.862 39 H 0.196 0.804 40 H 0.066 0.934 41 H 0.144 0.856 42 H 0.075 0.925 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.830 12.935 15.126 22.659 hybrid contribution -1.413 -0.960 -0.959 1.959 sum -12.244 11.975 14.167 22.227 Atomic orbital electron populations 1.21991 0.85989 1.07093 1.07084 1.22043 0.92880 0.81816 0.73204 1.90732 1.71619 1.32562 1.49210 1.43567 1.03289 1.11850 1.72354 1.17962 0.85140 0.95444 0.96647 1.21252 0.92913 0.98833 0.99451 1.21348 0.93826 0.96338 0.94560 1.19738 0.92685 0.97724 1.03638 1.18216 0.87321 0.81515 0.77934 1.90729 1.67886 1.37260 1.48357 1.45968 1.08181 1.27227 1.54020 1.21928 0.79091 0.98658 0.98626 0.87677 1.23961 1.02213 0.95326 0.98679 1.21481 0.87599 0.94472 0.92825 0.91919 1.42583 1.10210 1.15421 1.69770 1.19006 0.96919 0.91670 1.27935 0.91753 1.25323 1.00029 0.98104 1.01076 1.69851 1.24879 1.22397 1.45735 0.85790 0.79877 0.79098 0.78826 1.21661 1.16943 1.22172 1.23762 1.03199 0.96045 0.95870 1.21368 0.92537 0.99619 0.99432 1.17290 0.89334 0.89917 1.00070 1.91515 1.77663 1.59916 1.82322 0.85950 0.88173 0.86930 0.72913 0.81953 0.82581 0.75802 0.92341 0.86223 0.80370 0.93376 0.85578 0.92504 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 10.32 71.24 0.74 -0.22 16 2 C 0.51 8.31 7.78 87.66 0.68 8.99 16 3 O -0.56 -14.10 14.48 -3.06 -0.04 -14.14 16 4 N -0.66 -10.83 5.21 -303.32 -1.58 -12.40 16 5 C 0.15 3.38 6.31 38.37 0.24 3.62 16 6 C -0.10 -2.45 8.67 22.34 0.19 -2.26 16 7 C -0.04 -1.05 9.58 22.50 0.22 -0.83 16 8 C -0.13 -3.91 5.87 -20.08 -0.12 -4.03 16 9 C 0.56 18.22 7.76 86.71 0.67 18.90 16 10 O -0.56 -20.11 16.00 -3.99 -0.06 -20.17 16 11 N -0.70 -22.54 4.83 -443.15 -2.14 -24.68 16 12 C 0.12 3.56 4.25 45.52 0.19 3.75 16 13 H 0.11 2.90 7.59 -2.39 -0.02 2.89 16 14 C -0.16 -4.76 7.61 31.12 0.24 -4.53 16 15 C 0.14 5.04 4.53 45.52 0.21 5.24 16 16 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 17 N -0.74 -32.03 4.31 -320.44 -1.38 -33.41 16 18 C -0.22 -12.07 10.47 84.03 0.88 -11.19 16 19 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 20 C -0.05 -3.02 5.50 84.86 0.47 -2.56 16 21 N -0.98 -60.88 13.97 21.65 0.30 -60.58 16 22 Si 0.94 44.01 27.74 68.60 1.90 45.91 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.24 -9.94 4.87 99.48 0.48 -9.45 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 C -0.15 -4.27 7.57 31.12 0.24 -4.04 16 27 C -0.11 -3.26 9.37 22.55 0.21 -3.05 16 28 C 0.06 1.51 7.30 22.44 0.16 1.68 16 29 F -0.14 -3.82 16.93 44.97 0.76 -3.06 16 30 H 0.12 0.06 8.14 -2.39 -0.02 0.05 16 31 H 0.10 0.64 8.12 -2.39 -0.02 0.62 16 32 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.43 4.39 8.64 -92.71 -0.80 3.59 16 34 H 0.16 3.64 6.18 -2.91 -0.02 3.63 16 35 H 0.16 3.67 7.64 -2.91 -0.02 3.65 16 36 H 0.40 13.77 5.21 -92.71 -0.48 13.28 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.36 15.41 4.68 -92.70 -0.43 14.97 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.14 4.37 4.91 -2.91 -0.01 4.36 16 Total: -1.00 -74.19 361.79 2.13 -72.06 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.84 Total: 40.98 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.22 Total: 9.48 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -4.80 Total: -131.07 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.11 Total: -34.31 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.76 Total: -3.06 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.91 kcal Total: -74.19 2.13 -72.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023171627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.028 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds