Wall clock time and date at job start Tue Mar 31 2020 18:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21270 * 119.99998 * 2 1 4 4 N 1.34784 * 120.00113 * 179.97438 * 2 1 3 5 5 C 1.39285 * 119.99757 * 185.52568 * 4 2 1 6 6 C 1.38770 * 120.15677 * 24.86358 * 5 4 2 7 7 C 1.38101 * 120.14217 * 179.97438 * 6 5 4 8 8 C 1.38429 * 120.45264 * 359.97438 * 7 6 5 9 9 C 1.38147 * 120.29851 * 359.71816 * 8 7 6 10 10 F 1.35094 * 120.07937 * 180.27819 * 9 8 7 11 11 C 1.39952 * 119.84701 * 0.58166 * 9 8 7 12 12 C 1.47371 * 120.21669 * 179.69544 * 11 9 8 13 13 O 1.21610 * 120.00151 * 269.72499 * 12 11 9 14 14 N 1.34773 * 119.99952 * 89.72454 * 12 11 9 15 15 C 1.46503 * 120.00377 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47418 * 180.02562 * 15 14 12 17 17 C 1.53491 * 114.20378 * 184.99724 * 16 15 14 18 18 N 1.47059 * 87.98722 * 220.14644 * 17 16 15 19 19 C 1.36939 * 136.06121 * 206.86321 * 18 17 16 20 20 H 1.08004 * 119.99692 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99913 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00592 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00026 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46972 * 59.99732 * 23 21 19 25 25 H 1.48494 * 109.47511 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47079 * 300.00482 * 23 21 19 27 27 C 1.47067 * 87.88538 * 27.12221 * 18 17 16 28 28 H 1.08996 * 109.47329 * 270.00633 * 1 2 3 29 29 H 1.09004 * 109.46870 * 30.00836 * 1 2 3 30 30 H 1.09003 * 109.46667 * 150.00558 * 1 2 3 31 31 H 0.96995 * 119.99389 * 5.52206 * 4 2 1 32 32 H 1.08006 * 119.92632 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.77111 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.84866 * 180.02562 * 8 7 6 35 35 H 0.97005 * 120.00327 * 359.97438 * 14 12 11 36 36 H 1.08999 * 109.46803 * 59.99494 * 15 14 12 37 37 H 1.09000 * 109.46932 * 299.99998 * 15 14 12 38 38 H 1.08996 * 113.28214 * 318.06439 * 16 15 14 39 39 H 1.09002 * 113.46502 * 105.36671 * 17 16 15 40 40 H 1.09002 * 113.52507 * 334.93761 * 17 16 15 41 41 H 0.96999 * 120.00712 * 180.02562 * 22 21 19 42 42 H 1.09007 * 113.46540 * 87.65315 * 27 18 17 43 43 H 1.08990 * 113.47511 * 218.09802 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1810 -1.1673 0.0005 5 6 3.5690 -1.1699 0.1167 6 6 4.2193 -0.1079 0.7289 7 6 5.5955 -0.1111 0.8444 8 6 6.3384 -1.1706 0.3527 9 6 5.7095 -2.2403 -0.2545 10 9 6.4383 -3.2746 -0.7278 11 6 4.3160 -2.2472 -0.3839 12 6 3.6372 -3.3810 -1.0362 13 8 3.4367 -3.3614 -2.2355 14 7 3.2386 -4.4397 -0.3036 15 6 2.5634 -5.5667 -0.9519 16 6 2.2190 -6.6265 0.0965 17 6 1.6144 -7.9125 -0.4838 18 7 0.6880 -7.9305 0.6582 19 6 -0.0046 -8.8873 1.3511 20 1 0.0809 -9.9263 1.0689 21 6 -0.8164 -8.5218 2.4161 22 7 -0.9202 -7.2557 2.7603 23 14 -1.7617 -9.8269 3.3608 24 1 -0.8070 -10.7975 3.9541 25 1 -2.5482 -9.1824 4.4430 26 1 -2.6809 -10.5387 2.4367 27 6 0.8274 -6.4680 0.7246 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6993 -2.0053 -0.0799 32 1 3.6480 0.7230 1.1159 33 1 6.0955 0.7184 1.3223 34 1 7.4140 -1.1632 0.4486 35 1 3.3989 -4.4556 0.6530 36 1 3.2216 -6.0002 -1.7049 37 1 1.6477 -5.2163 -1.4282 38 1 3.0185 -6.7945 0.8180 39 1 2.3085 -8.7528 -0.4929 40 1 1.1180 -7.7656 -1.4431 41 1 -1.4873 -7.0003 3.5047 42 1 0.1216 -5.9353 0.0871 43 1 0.8525 -6.0800 1.7428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032027787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:36 Heat of formation + Delta-G solvation = -50.642853 kcal Electronic energy + Delta-G solvation = -28496.588160 eV Core-core repulsion = 24264.478082 eV Total energy + Delta-G solvation = -4232.110078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.09913 -42.02815 -40.81916 -39.89164 -39.02996 -36.02995 -35.86445 -34.23205 -32.43308 -31.82367 -30.51868 -29.61359 -27.76083 -26.34818 -25.10300 -24.30791 -23.64437 -21.90357 -21.68879 -20.87209 -19.47178 -18.83297 -18.63314 -18.51957 -17.53297 -17.18423 -16.93753 -16.83792 -16.67587 -16.54210 -16.26006 -15.97890 -15.68896 -15.35458 -15.02024 -14.82948 -14.52363 -14.31596 -14.03750 -13.80357 -13.51688 -13.33574 -13.25571 -13.03892 -12.98631 -12.89623 -12.85154 -12.63195 -12.29061 -11.89699 -11.74595 -11.70015 -11.26558 -11.02987 -10.99464 -10.86238 -10.21395 -10.00352 -9.33251 -8.91967 -7.91281 -5.24043 -0.21707 0.00243 1.24599 1.39864 1.47007 1.49496 1.55547 1.81381 1.98591 2.46429 2.47668 3.08765 3.30927 3.39923 3.49407 3.59711 3.70071 3.83319 3.90779 4.06735 4.20423 4.23831 4.32625 4.43334 4.55072 4.58518 4.70373 4.77998 4.82818 4.84991 4.89345 4.99786 5.04026 5.05149 5.20631 5.22818 5.28878 5.29484 5.52339 5.63679 5.76189 5.94202 6.11541 6.31584 6.83674 6.91809 6.95787 7.59853 8.60354 9.25941 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.002926 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.856849 B = 9567.477566 C =10750.299939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.514 3.486 3 O -0.553 6.553 4 N -0.669 5.669 5 C 0.202 3.798 6 C -0.154 4.154 7 C -0.039 4.039 8 C -0.165 4.165 9 C 0.137 3.863 10 F -0.138 7.138 11 C -0.214 4.214 12 C 0.565 3.435 13 O -0.565 6.565 14 N -0.701 5.701 15 C 0.142 3.858 16 C -0.121 4.121 17 C 0.125 3.875 18 N -0.645 5.645 19 C -0.234 4.234 20 H 0.083 0.917 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.280 1.280 27 C 0.161 3.839 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.420 0.580 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.414 0.586 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.249 0.751 42 H 0.020 0.980 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.329 16.080 -2.671 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.305 3.695 3 O -0.430 6.430 4 N -0.312 5.312 5 C 0.104 3.896 6 C -0.175 4.175 7 C -0.057 4.057 8 C -0.184 4.184 9 C 0.116 3.884 10 F -0.117 7.117 11 C -0.221 4.221 12 C 0.350 3.650 13 O -0.444 6.444 14 N -0.352 5.352 15 C 0.018 3.982 16 C -0.141 4.141 17 C -0.001 4.001 18 N -0.370 5.370 19 C -0.362 4.362 20 H 0.100 0.900 21 C -0.256 4.256 22 N -0.598 5.598 23 Si 0.805 3.195 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.206 1.206 27 C 0.035 3.965 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.257 0.743 32 H 0.172 0.828 33 H 0.195 0.805 34 H 0.189 0.811 35 H 0.250 0.750 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.275 16.623 -3.288 20.354 hybrid contribution -0.919 -1.518 0.608 1.876 sum 10.356 15.105 -2.680 18.509 Atomic orbital electron populations 1.21995 0.87045 1.06689 1.07020 1.21777 0.92542 0.81901 0.73260 1.90662 1.71276 1.32101 1.49002 1.43746 1.04793 1.11355 1.71319 1.17581 0.83519 0.94067 0.94406 1.21583 0.96091 0.98934 1.00857 1.21454 0.92256 0.97582 0.94455 1.21401 1.02856 0.92696 1.01494 1.17593 0.86783 0.86502 0.97494 1.91521 1.76887 1.57055 1.86224 1.19510 0.93381 0.99027 1.10209 1.18113 0.78214 0.82412 0.86244 1.90808 1.56955 1.80875 1.15759 1.46069 1.58399 1.18172 1.12544 1.21249 0.96972 0.85097 0.94834 1.23237 0.97722 0.95234 0.97859 1.22494 0.90982 0.95506 0.91069 1.45896 1.53525 1.03974 1.33652 1.19283 1.20087 0.88266 1.08542 0.89950 1.25577 1.01434 0.98420 1.00166 1.69966 1.43159 1.16150 1.30503 0.85176 0.78327 0.78091 0.77866 1.20226 1.21864 1.20577 1.22127 0.91112 0.85160 0.98108 0.86181 0.87358 0.88365 0.74300 0.82848 0.80485 0.81119 0.74971 0.90646 0.91355 0.87966 0.92788 0.93433 0.94181 0.96270 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.31 71.24 0.73 -1.38 16 2 C 0.51 10.51 7.74 87.66 0.68 11.19 16 3 O -0.55 -14.42 14.25 -3.00 -0.04 -14.46 16 4 N -0.67 -14.13 5.16 -302.96 -1.56 -15.70 16 5 C 0.20 4.65 6.44 38.59 0.25 4.90 16 6 C -0.15 -3.06 8.70 22.36 0.19 -2.87 16 7 C -0.04 -0.56 10.02 22.28 0.22 -0.33 16 8 C -0.17 -2.60 10.00 22.29 0.22 -2.38 16 9 C 0.14 3.09 7.29 22.66 0.17 3.26 16 10 F -0.14 -3.51 16.83 44.97 0.76 -2.75 16 11 C -0.21 -5.36 5.65 -19.95 -0.11 -5.47 16 12 C 0.56 16.16 5.81 86.65 0.50 16.66 16 13 O -0.56 -20.37 17.11 -4.06 -0.07 -20.44 16 14 N -0.70 -17.72 5.55 -466.42 -2.59 -20.31 16 15 C 0.14 3.94 5.60 86.38 0.48 4.42 16 16 C -0.12 -3.92 4.09 -10.46 -0.04 -3.96 16 17 C 0.13 4.70 8.26 83.17 0.69 5.39 16 18 N -0.64 -31.82 3.78 -738.55 -2.79 -34.61 16 19 C -0.23 -12.83 10.75 84.03 0.90 -11.93 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 21 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 22 N -0.95 -54.97 11.51 21.65 0.25 -54.72 16 23 Si 0.98 44.43 29.55 68.60 2.03 46.46 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 27 C 0.16 6.95 6.98 83.17 0.58 7.53 16 28 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.42 8.22 7.89 -92.71 -0.73 7.49 16 32 H 0.15 3.19 5.78 -2.91 -0.02 3.18 16 33 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 34 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.41 9.13 8.46 -92.70 -0.78 8.34 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 1.99 7.82 -2.39 -0.02 1.97 16 38 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.70 8.11 -2.39 -0.02 1.68 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.02 0.86 7.89 -2.38 -0.02 0.84 16 43 H 0.04 2.12 7.12 -2.39 -0.02 2.10 16 Total: -1.00 -75.20 372.35 1.47 -73.73 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.44 Total: 20.76 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 5.94 Total: 22.04 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -6.70 Total: -125.34 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.11 Total: -34.91 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.76 Total: -2.75 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -75.20 1.47 -73.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032027787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.091 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds