Wall clock time and date at job start Tue Mar 31 2020 18:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00184 * 2 1 4 4 N 1.34781 * 119.99881 * 179.97438 * 2 1 3 5 5 C 1.39547 * 120.00019 * 185.53069 * 4 2 1 6 6 C 1.39069 * 119.93677 * 24.87165 * 5 4 2 7 7 C 1.37694 * 120.10131 * 180.02562 * 6 5 4 8 8 C 1.39732 * 119.96962 * 0.02562 * 7 6 5 9 9 C 1.47604 * 120.06679 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99568 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00025 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00206 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47529 * 180.02562 * 12 11 9 14 14 C 1.53490 * 114.20682 * 174.99946 * 13 12 11 15 15 N 1.47075 * 87.98425 * 87.71778 * 14 13 12 16 16 C 1.36935 * 136.05505 * 206.85761 * 15 14 13 17 17 H 1.07999 * 120.00208 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99532 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99643 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47044 * 90.00096 * 20 18 16 22 22 H 1.48500 * 109.47141 * 210.00022 * 20 18 16 23 23 H 1.48494 * 109.47355 * 330.00049 * 20 18 16 24 24 C 1.47063 * 87.88365 * 27.12140 * 15 14 13 25 25 C 1.39752 * 119.86749 * 0.25281 * 8 7 6 26 26 C 1.37873 * 119.89714 * 359.46534 * 25 8 7 27 27 F 1.35096 * 119.98357 * 180.25251 * 26 25 8 28 28 H 1.08996 * 109.47348 * 240.00549 * 1 2 3 29 29 H 1.08999 * 109.46860 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47051 * 119.99740 * 1 2 3 31 31 H 0.97001 * 119.99458 * 5.51956 * 4 2 1 32 32 H 1.07998 * 119.94446 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.00986 * 179.97438 * 7 6 5 34 34 H 0.97004 * 119.99649 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47182 * 60.00125 * 12 11 9 36 36 H 1.09007 * 109.47458 * 300.00256 * 12 11 9 37 37 H 1.08996 * 113.27900 * 41.93682 * 13 12 11 38 38 H 1.08997 * 113.46945 * 332.94284 * 14 13 12 39 39 H 1.09005 * 113.52357 * 202.50435 * 14 13 12 40 40 H 0.96999 * 119.99540 * 180.02562 * 19 18 16 41 41 H 1.08997 * 113.47188 * 87.65736 * 24 15 14 42 42 H 1.09003 * 113.46612 * 218.10129 * 24 15 14 43 43 H 1.07995 * 120.05161 * 179.72787 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5715 -1.1700 0.1170 6 6 4.2186 -0.1035 0.7316 7 6 5.5906 -0.1025 0.8479 8 6 6.3344 -1.1743 0.3473 9 6 7.8053 -1.1752 0.4703 10 8 8.3709 -0.2425 1.0072 11 7 8.5213 -2.2099 -0.0127 12 6 9.9812 -2.2105 0.1089 13 6 10.5444 -3.4888 -0.5153 14 6 12.0777 -3.5467 -0.5559 15 7 12.0395 -4.1327 0.7926 16 6 12.8798 -4.1762 1.8729 17 1 13.8416 -3.6870 1.8289 18 6 12.4954 -4.8493 3.0244 19 7 11.3235 -5.4460 3.0778 20 14 13.6415 -4.9081 4.4984 21 1 13.3689 -3.7476 5.3840 22 1 13.4162 -6.1685 5.2506 23 1 15.0504 -4.8549 4.0324 24 6 10.7044 -4.6569 0.4677 25 6 5.6832 -2.2427 -0.2754 26 6 4.3087 -2.2408 -0.3836 27 9 3.6771 -3.2751 -0.9806 28 1 -0.3634 -0.5137 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.6992 -2.0053 -0.0799 32 1 3.6441 0.7256 1.1176 33 1 6.0917 0.7267 1.3252 34 1 8.0699 -2.9538 -0.4414 35 1 10.2581 -2.1676 1.1623 36 1 10.3894 -1.3430 -0.4097 37 1 10.0620 -3.7582 -1.4548 38 1 12.5484 -2.5642 -0.5889 39 1 12.4675 -4.2265 -1.3136 40 1 11.0548 -5.9160 3.8826 41 1 10.7274 -5.6326 -0.0177 42 1 10.0074 -4.6182 1.3049 43 1 6.2554 -3.0705 -0.6673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032227841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:19 Heat of formation + Delta-G solvation = -24.144720 kcal Electronic energy + Delta-G solvation = -27737.803990 eV Core-core repulsion = 23506.842958 eV Total energy + Delta-G solvation = -4230.961033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.25569 -41.00333 -39.89302 -38.49615 -37.79314 -35.29083 -34.36985 -32.22998 -31.55463 -30.82255 -29.48498 -28.33289 -26.05856 -24.61608 -24.24327 -23.12453 -22.24644 -21.29921 -20.42799 -19.22441 -18.58459 -17.60211 -17.49896 -16.75178 -16.70109 -16.32294 -15.92506 -15.68425 -15.53664 -15.13976 -14.77478 -14.73085 -14.46381 -14.05988 -13.82948 -13.62268 -13.36901 -13.25469 -13.00611 -12.70972 -12.63180 -12.51617 -12.32514 -11.95213 -11.53843 -11.12160 -11.01067 -10.95382 -10.74489 -10.52463 -10.37618 -9.96192 -9.81984 -9.74984 -9.25173 -9.19953 -8.80767 -8.76983 -8.44761 -6.87580 -5.75813 -3.07933 0.40595 0.88101 1.96332 2.42518 2.80331 3.30565 3.41540 3.46096 3.47665 3.64542 3.76210 4.09046 4.36652 4.47670 4.60452 4.66464 4.76953 4.82658 4.96517 5.07298 5.26122 5.28832 5.31331 5.36603 5.48981 5.59085 5.64908 5.75539 5.94921 6.00934 6.06909 6.16371 6.36037 6.50984 6.52675 6.58650 6.64588 6.74327 6.79376 7.17371 7.28655 7.48893 7.55646 7.70471 7.98853 8.37494 9.05085 9.71857 10.64578 11.41766 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.002197 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.717166 B =12743.520122 C =12869.306834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.517 6.517 4 N -0.669 5.669 5 C 0.138 3.862 6 C -0.116 4.116 7 C -0.046 4.046 8 C -0.117 4.117 9 C 0.556 3.444 10 O -0.534 6.534 11 N -0.715 5.715 12 C 0.150 3.850 13 C -0.163 4.163 14 C 0.127 3.873 15 N -0.609 5.609 16 C -0.217 4.217 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.158 3.842 25 C -0.097 4.097 26 C 0.059 3.941 27 F -0.136 7.136 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.416 0.584 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.397 0.603 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.253 0.747 41 H 0.025 0.975 42 H 0.073 0.927 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.896 6.801 -9.689 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.301 3.699 3 O -0.392 6.392 4 N -0.313 5.313 5 C 0.041 3.959 6 C -0.136 4.136 7 C -0.065 4.065 8 C -0.122 4.122 9 C 0.342 3.658 10 O -0.412 6.412 11 N -0.365 5.365 12 C 0.028 3.972 13 C -0.182 4.182 14 C 0.000 4.000 15 N -0.335 5.335 16 C -0.344 4.344 17 H 0.099 0.901 18 C -0.205 4.205 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.032 3.968 25 C -0.117 4.117 26 C 0.037 3.963 27 F -0.114 7.114 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.253 0.747 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.232 0.768 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.092 0.908 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.016 8.111 -8.965 25.998 hybrid contribution 0.059 -1.499 0.329 1.536 sum -22.957 6.612 -8.637 25.404 Atomic orbital electron populations 1.21943 0.90063 1.06340 1.04871 1.21104 0.91134 0.82766 0.74940 1.90730 1.70333 1.31234 1.46917 1.43468 1.04864 1.10747 1.72270 1.17932 0.83340 0.95804 0.98833 1.21299 0.94523 0.98752 0.99037 1.21296 0.92689 0.97281 0.95250 1.19910 0.93936 0.95768 1.02544 1.17968 0.86130 0.82801 0.78904 1.90800 1.71785 1.35355 1.43296 1.45962 1.08697 1.22076 1.59811 1.21072 0.76826 0.96498 1.02808 1.23274 0.98202 0.97455 0.99313 1.22347 0.91730 0.96834 0.89061 1.45632 1.17801 1.61428 1.08673 1.18930 0.97495 1.28760 0.89233 0.90122 1.24784 0.97443 1.00126 0.98116 1.69816 1.19966 1.39055 1.27901 0.86119 0.79841 0.77123 0.82684 1.21450 1.21686 1.20686 1.22149 0.88964 0.91545 0.94115 1.21151 0.92070 0.99281 0.99240 1.17110 0.90362 0.87037 1.01762 1.91493 1.82174 1.56225 1.81539 0.88705 0.88222 0.88855 0.74695 0.82257 0.83392 0.76819 0.89588 0.91946 0.91044 0.93948 0.94615 0.93707 0.95725 0.90827 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 10.32 36.01 0.37 -0.12 16 2 C 0.51 3.79 7.74 -10.98 -0.08 3.71 16 3 O -0.52 -5.96 14.23 5.56 0.08 -5.88 16 4 N -0.67 -4.73 5.29 -9.80 -0.05 -4.78 16 5 C 0.14 1.38 6.44 -83.64 -0.54 0.84 16 6 C -0.12 -1.29 8.69 -39.47 -0.34 -1.63 16 7 C -0.05 -0.56 9.58 -39.22 -0.38 -0.93 16 8 C -0.12 -1.51 5.88 -104.95 -0.62 -2.13 16 9 C 0.56 8.90 7.76 -12.44 -0.10 8.81 16 10 O -0.53 -10.55 16.34 5.29 0.09 -10.47 16 11 N -0.71 -10.70 5.50 -61.33 -0.34 -11.04 16 12 C 0.15 2.68 5.50 -4.04 -0.02 2.65 16 13 C -0.16 -2.86 4.17 -90.11 -0.38 -3.23 16 14 C 0.13 2.54 8.26 -8.50 -0.07 2.47 16 15 N -0.61 -15.47 3.62 -184.76 -0.67 -16.13 16 16 C -0.22 -6.11 10.75 -15.06 -0.16 -6.27 16 17 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.39 11.51 55.49 0.64 -26.75 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 C 0.16 3.58 6.90 -8.51 -0.06 3.52 16 25 C -0.10 -1.05 9.51 -39.15 -0.37 -1.42 16 26 C 0.06 0.60 7.29 -39.32 -0.29 0.31 16 27 F -0.14 -1.30 16.79 2.25 0.04 -1.26 16 28 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.10 0.31 8.12 -51.93 -0.42 -0.11 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.42 1.75 8.44 -40.82 -0.34 1.40 16 32 H 0.16 1.78 5.77 -52.49 -0.30 1.48 16 33 H 0.15 1.81 7.64 -52.49 -0.40 1.41 16 34 H 0.40 4.77 6.49 -40.82 -0.27 4.50 16 35 H 0.09 1.91 7.93 -51.93 -0.41 1.50 16 36 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.86 7.10 -51.93 -0.37 1.49 16 43 H 0.15 1.28 6.39 -52.49 -0.34 0.95 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -35.92 369.43 -8.15 -44.08 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.35 Total: 3.00 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -3.13 Total: 6.23 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.42 Total: -58.71 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.17 Total: -16.34 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.92 -8.15 -44.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032227841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.930 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds