Wall clock time and date at job start Tue Mar 31 2020 18:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00184 * 2 1 4 4 N 1.34781 * 119.99881 * 179.97438 * 2 1 3 5 5 C 1.39547 * 120.00019 * 185.53069 * 4 2 1 6 6 C 1.39069 * 119.93677 * 24.87165 * 5 4 2 7 7 C 1.37694 * 120.10131 * 180.02562 * 6 5 4 8 8 C 1.39732 * 119.96962 * 0.02562 * 7 6 5 9 9 C 1.47604 * 120.06679 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99568 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00025 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00206 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47529 * 180.02562 * 12 11 9 14 14 C 1.53490 * 114.20682 * 174.99946 * 13 12 11 15 15 N 1.47075 * 87.98425 * 87.71778 * 14 13 12 16 16 C 1.36935 * 136.05505 * 206.85761 * 15 14 13 17 17 H 1.07999 * 120.00208 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99532 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99643 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47044 * 90.00096 * 20 18 16 22 22 H 1.48500 * 109.47141 * 210.00022 * 20 18 16 23 23 H 1.48494 * 109.47355 * 330.00049 * 20 18 16 24 24 C 1.47063 * 87.88365 * 27.12140 * 15 14 13 25 25 C 1.39752 * 119.86749 * 0.25281 * 8 7 6 26 26 C 1.37873 * 119.89714 * 359.46534 * 25 8 7 27 27 F 1.35096 * 119.98357 * 180.25251 * 26 25 8 28 28 H 1.08996 * 109.47348 * 240.00549 * 1 2 3 29 29 H 1.08999 * 109.46860 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47051 * 119.99740 * 1 2 3 31 31 H 0.97001 * 119.99458 * 5.51956 * 4 2 1 32 32 H 1.07998 * 119.94446 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.00986 * 179.97438 * 7 6 5 34 34 H 0.97004 * 119.99649 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47182 * 60.00125 * 12 11 9 36 36 H 1.09007 * 109.47458 * 300.00256 * 12 11 9 37 37 H 1.08996 * 113.27900 * 41.93682 * 13 12 11 38 38 H 1.08997 * 113.46945 * 332.94284 * 14 13 12 39 39 H 1.09005 * 113.52357 * 202.50435 * 14 13 12 40 40 H 0.96999 * 119.99540 * 180.02562 * 19 18 16 41 41 H 1.08997 * 113.47188 * 87.65736 * 24 15 14 42 42 H 1.09003 * 113.46612 * 218.10129 * 24 15 14 43 43 H 1.07995 * 120.05161 * 179.72787 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5715 -1.1700 0.1170 6 6 4.2186 -0.1035 0.7316 7 6 5.5906 -0.1025 0.8479 8 6 6.3344 -1.1743 0.3473 9 6 7.8053 -1.1752 0.4703 10 8 8.3709 -0.2425 1.0072 11 7 8.5213 -2.2099 -0.0127 12 6 9.9812 -2.2105 0.1089 13 6 10.5444 -3.4888 -0.5153 14 6 12.0777 -3.5467 -0.5559 15 7 12.0395 -4.1327 0.7926 16 6 12.8798 -4.1762 1.8729 17 1 13.8416 -3.6870 1.8289 18 6 12.4954 -4.8493 3.0244 19 7 11.3235 -5.4460 3.0778 20 14 13.6415 -4.9081 4.4984 21 1 13.3689 -3.7476 5.3840 22 1 13.4162 -6.1685 5.2506 23 1 15.0504 -4.8549 4.0324 24 6 10.7044 -4.6569 0.4677 25 6 5.6832 -2.2427 -0.2754 26 6 4.3087 -2.2408 -0.3836 27 9 3.6771 -3.2751 -0.9806 28 1 -0.3634 -0.5137 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.6992 -2.0053 -0.0799 32 1 3.6441 0.7256 1.1176 33 1 6.0917 0.7267 1.3252 34 1 8.0699 -2.9538 -0.4414 35 1 10.2581 -2.1676 1.1623 36 1 10.3894 -1.3430 -0.4097 37 1 10.0620 -3.7582 -1.4548 38 1 12.5484 -2.5642 -0.5889 39 1 12.4675 -4.2265 -1.3136 40 1 11.0548 -5.9160 3.8826 41 1 10.7274 -5.6326 -0.0177 42 1 10.0074 -4.6182 1.3049 43 1 6.2554 -3.0705 -0.6673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032227841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:18 Heat of formation + Delta-G solvation = -49.906207 kcal Electronic energy + Delta-G solvation = -27738.921092 eV Core-core repulsion = 23506.842958 eV Total energy + Delta-G solvation = -4232.078135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.04637 -41.78076 -41.05063 -39.97771 -38.91246 -36.07402 -35.79462 -34.22531 -32.35658 -31.64514 -30.57284 -29.66912 -27.66567 -26.32064 -25.22221 -24.44183 -23.64758 -22.14198 -21.45702 -20.63966 -19.53801 -18.81226 -18.51469 -18.22694 -17.66755 -17.18577 -17.03767 -16.86412 -16.63183 -16.37909 -16.28885 -15.76524 -15.68089 -15.45079 -15.07249 -14.65699 -14.56077 -14.28333 -14.11997 -13.68707 -13.66201 -13.38384 -13.29470 -13.04060 -12.94883 -12.83806 -12.81202 -12.56313 -12.25328 -11.82829 -11.81243 -11.61534 -11.30333 -11.03470 -10.94245 -10.84432 -10.14927 -10.05896 -9.30159 -8.89271 -7.90524 -5.21919 -0.51994 0.01202 1.29272 1.43591 1.46107 1.53688 1.76259 1.86122 2.06980 2.47383 2.61403 2.90350 3.31831 3.42798 3.52463 3.59922 3.69116 3.74258 3.91206 3.99227 4.06637 4.31142 4.49306 4.53940 4.57929 4.63547 4.65318 4.79839 4.82808 4.89257 4.90242 4.99727 5.04062 5.08640 5.14645 5.22366 5.25906 5.36699 5.55077 5.63976 5.66864 5.96814 6.21387 6.49750 6.92903 6.93402 7.14862 7.61735 8.62497 9.26996 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.002197 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.717166 B =12743.520122 C =12869.306834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.508 3.492 3 O -0.563 6.563 4 N -0.659 5.659 5 C 0.147 3.853 6 C -0.122 4.122 7 C -0.050 4.050 8 C -0.135 4.135 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.704 5.704 12 C 0.161 3.839 13 C -0.125 4.125 14 C 0.125 3.875 15 N -0.645 5.645 16 C -0.225 4.225 17 H 0.082 0.918 18 C -0.070 4.070 19 N -0.951 5.951 20 Si 0.975 3.025 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.268 1.268 24 C 0.154 3.846 25 C -0.087 4.087 26 C 0.061 3.939 27 F -0.127 7.127 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.432 0.568 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.414 0.586 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.247 0.753 41 H 0.025 0.975 42 H 0.038 0.962 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.694 6.133 -11.544 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.299 3.701 3 O -0.441 6.441 4 N -0.305 5.305 5 C 0.049 3.951 6 C -0.142 4.142 7 C -0.070 4.070 8 C -0.139 4.139 9 C 0.343 3.657 10 O -0.462 6.462 11 N -0.355 5.355 12 C 0.037 3.963 13 C -0.144 4.144 14 C -0.001 4.001 15 N -0.371 5.371 16 C -0.353 4.353 17 H 0.100 0.900 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.803 3.197 21 H -0.217 1.217 22 H -0.220 1.220 23 H -0.192 1.192 24 C 0.028 3.972 25 C -0.106 4.106 26 C 0.039 3.961 27 F -0.106 7.106 28 H 0.137 0.863 29 H 0.116 0.884 30 H 0.137 0.863 31 H 0.272 0.728 32 H 0.175 0.825 33 H 0.156 0.844 34 H 0.252 0.748 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -24.853 7.401 -10.881 28.122 hybrid contribution 0.516 -1.264 0.836 1.601 sum -24.336 6.137 -10.044 27.033 Atomic orbital electron populations 1.21994 0.86058 1.07008 1.07150 1.22034 0.92894 0.81876 0.73276 1.90719 1.71556 1.32829 1.48948 1.43564 1.03654 1.11799 1.71492 1.18033 0.84899 0.94986 0.97208 1.21244 0.93931 0.99321 0.99730 1.21273 0.93288 0.97070 0.95345 1.19595 0.91938 0.97287 1.05080 1.18423 0.87399 0.82069 0.77764 1.90771 1.72939 1.37122 1.45387 1.45770 1.07584 1.22530 1.59641 1.20756 0.78588 0.97154 0.99802 1.23009 0.97162 0.94666 0.99602 1.22581 0.93476 0.97219 0.86798 1.46001 1.18591 1.62221 1.10313 1.19297 0.97812 1.27650 0.90534 0.90001 1.25588 0.99049 1.00758 1.00852 1.69993 1.21576 1.40334 1.28151 0.85129 0.78676 0.76538 0.79335 1.21710 1.21952 1.19244 1.22148 0.87343 0.93417 0.94243 1.21281 0.92560 0.98822 0.97972 1.17007 0.90136 0.87227 1.01759 1.91518 1.81938 1.55803 1.81344 0.86330 0.88438 0.86347 0.72771 0.82520 0.84370 0.74825 0.94724 0.91014 0.85940 0.93163 0.92338 0.94455 0.95742 0.94347 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.44 10.32 71.24 0.74 0.29 16 2 C 0.51 6.61 7.74 87.66 0.68 7.29 16 3 O -0.56 -12.69 14.23 -3.03 -0.04 -12.73 16 4 N -0.66 -7.86 5.29 -303.32 -1.60 -9.46 16 5 C 0.15 2.72 6.44 38.37 0.25 2.96 16 6 C -0.12 -2.70 8.69 22.34 0.19 -2.51 16 7 C -0.05 -1.26 9.58 22.50 0.22 -1.04 16 8 C -0.13 -3.46 5.88 -20.08 -0.12 -3.58 16 9 C 0.56 18.03 7.76 86.72 0.67 18.71 16 10 O -0.58 -23.94 16.34 -3.97 -0.06 -24.01 16 11 N -0.70 -20.55 5.50 -466.21 -2.57 -23.12 16 12 C 0.16 5.66 5.50 86.38 0.48 6.14 16 13 C -0.13 -4.14 4.17 -10.46 -0.04 -4.18 16 14 C 0.12 4.74 8.26 83.18 0.69 5.43 16 15 N -0.64 -32.83 3.62 -738.45 -2.68 -35.51 16 16 C -0.22 -12.82 10.75 84.03 0.90 -11.92 16 17 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 18 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 19 N -0.95 -58.31 11.51 21.65 0.25 -58.06 16 20 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.15 6.97 6.90 83.18 0.57 7.54 16 25 C -0.09 -1.71 9.51 22.55 0.21 -1.50 16 26 C 0.06 1.10 7.29 22.44 0.16 1.27 16 27 F -0.13 -2.06 16.79 44.97 0.76 -1.30 16 28 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.10 0.38 8.12 -2.39 -0.02 0.36 16 30 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.43 2.29 8.44 -92.71 -0.78 1.51 16 32 H 0.16 3.59 5.77 -2.91 -0.02 3.58 16 33 H 0.14 3.66 7.64 -2.91 -0.02 3.64 16 34 H 0.41 9.07 6.49 -92.71 -0.60 8.47 16 35 H 0.03 1.59 7.93 -2.39 -0.02 1.58 16 36 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.05 1.83 8.12 -2.39 -0.02 1.81 16 39 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.04 2.00 7.10 -2.39 -0.02 1.98 16 43 H 0.17 2.47 6.39 -2.91 -0.02 2.45 16 Total: -1.00 -81.98 369.43 1.84 -80.15 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -0.31 Total: 13.60 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 6.07 Total: 21.31 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -6.60 Total: -126.15 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.11 Total: -36.74 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.76 Total: -1.30 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -81.98 1.84 -80.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032227841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.242 kcal (2) G-P(sol) polarization free energy of solvation -81.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds